diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b0e3498ad..76cfff0dd 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -27,7 +27,7 @@ repos:
         args: ["--tab-width", "2"]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.4
+    rev: v0.9.7
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
diff --git a/scripts/ruff_version.py b/scripts/ruff_version.py
index e280cef42..ef50ce323 100644
--- a/scripts/ruff_version.py
+++ b/scripts/ruff_version.py
@@ -8,6 +8,7 @@ import tomllib
 ROOT = Path(__file__).parent.parent
 TEMPLATED_ROOT = ROOT / "{{cookiecutter.project_slug}}"
 REQUIREMENTS_LOCAL_TXT = TEMPLATED_ROOT / "requirements" / "local.txt"
+TEMPLATE_PRE_COMMIT_CONFIG = ROOT / ".pre-commit-config.yaml"
 PRE_COMMIT_CONFIG = TEMPLATED_ROOT / ".pre-commit-config.yaml"
 PYPROJECT_TOML = ROOT / "pyproject.toml"
 
@@ -45,12 +46,13 @@ def update_ruff_version(old_version: str, new_version: str) -> None:
         f"ruff=={new_version}",
     )
     PYPROJECT_TOML.write_text(new_content)
-    # Update pre-commit config
-    new_content = PRE_COMMIT_CONFIG.read_text().replace(
-        f"repo: https://github.com/astral-sh/ruff-pre-commit\n    rev: v{old_version}",
-        f"repo: https://github.com/astral-sh/ruff-pre-commit\n    rev: v{new_version}",
-    )
-    PRE_COMMIT_CONFIG.write_text(new_content)
+    # Update pre-commit configs
+    for config_file in [PRE_COMMIT_CONFIG, TEMPLATE_PRE_COMMIT_CONFIG]:
+        new_content = config_file.read_text().replace(
+            f"repo: https://github.com/astral-sh/ruff-pre-commit\n    rev: v{old_version}",
+            f"repo: https://github.com/astral-sh/ruff-pre-commit\n    rev: v{new_version}",
+        )
+        config_file.write_text(new_content)
 
 
 if __name__ == "__main__":