spaCy/setup.py

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#!/usr/bin/env python
from setuptools import Extension, setup, find_packages
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import sys
import numpy
from setuptools.command.build_ext import build_ext
from sysconfig import get_path
from pathlib import Path
import shutil
from Cython.Build import cythonize
from Cython.Compiler import Options
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import os
import subprocess
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ROOT = Path(__file__).parent
PACKAGE_ROOT = ROOT / "spacy"
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# Preserve `__doc__` on functions and classes
# http://docs.cython.org/en/latest/src/userguide/source_files_and_compilation.html#compiler-options
Options.docstrings = True
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PACKAGES = find_packages()
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MOD_NAMES = [
"spacy.training.alignment_array",
"spacy.training.example",
"spacy.parts_of_speech",
"spacy.strings",
"spacy.lexeme",
"spacy.vocab",
"spacy.attrs",
Refactor KB for easier customization (#11268) * Add implementation of batching + backwards compatibility fixes. Tests indicate issue with batch disambiguation for custom singular entity lookups. * Fix tests. Add distinction w.r.t. batch size. * Remove redundant and add new comments. * Adjust comments. Fix variable naming in EL prediction. * Fix mypy errors. * Remove KB entity type config option. Change return types of candidate retrieval functions to Iterable from Iterator. Fix various other issues. * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/kb_base.pyx Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/kb_base.pyx Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Add error messages to NotImplementedErrors. Remove redundant comment. * Fix imports. * Remove redundant comments. * Rename KnowledgeBase to InMemoryLookupKB and BaseKnowledgeBase to KnowledgeBase. * Fix tests. * Update spacy/errors.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Move KB into subdirectory. * Adjust imports after KB move to dedicated subdirectory. * Fix config imports. * Move Candidate + retrieval functions to separate module. Fix other, small issues. * Fix docstrings and error message w.r.t. class names. Fix typing for candidate retrieval functions. * Update spacy/kb/kb_in_memory.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/models/entity_linker.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix typing. * Change typing of mentions to be Span instead of Union[Span, str]. * Update docs. * Update EntityLinker and _architecture docs. * Update website/docs/api/entitylinker.md Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Adjust message for E1046. * Re-add section for Candidate in kb.md, add reference to dedicated page. * Update docs and docstrings. * Re-add section + reference for KnowledgeBase.get_alias_candidates() in docs. * Update spacy/kb/candidate.pyx * Update spacy/kb/kb_in_memory.pyx * Update spacy/pipeline/legacy/entity_linker.py * Remove canididate.md. Remove mistakenly added config snippet in entity_linker.py. Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
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"spacy.kb.candidate",
"spacy.kb.kb",
"spacy.kb.kb_in_memory",
"spacy.ml.parser_model",
"spacy.morphology",
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
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"spacy.pipeline.dep_parser",
"spacy.pipeline._edit_tree_internals.edit_trees",
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"spacy.pipeline.morphologizer",
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
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"spacy.pipeline.multitask",
"spacy.pipeline.ner",
"spacy.pipeline.pipe",
"spacy.pipeline.trainable_pipe",
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
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"spacy.pipeline.sentencizer",
"spacy.pipeline.senter",
"spacy.pipeline.tagger",
"spacy.pipeline.transition_parser",
"spacy.pipeline._parser_internals.arc_eager",
"spacy.pipeline._parser_internals.ner",
"spacy.pipeline._parser_internals.nonproj",
"spacy.pipeline._parser_internals._state",
"spacy.pipeline._parser_internals.stateclass",
"spacy.pipeline._parser_internals.transition_system",
Add beam_parser and beam_ner components for v3 (#6369) * Get basic beam tests working * Get basic beam tests working * Compile _beam_utils * Remove prints * Test beam density * Beam parser seems to train * Draft beam NER * Upd beam * Add hypothesis as dev dependency * Implement missing is-gold-parse method * Implement early update * Fix state hashing * Fix test * Fix test * Default to non-beam in parser constructor * Improve oracle for beam * Start refactoring beam * Update test * Refactor beam * Update nn * Refactor beam and weight by cost * Update ner beam settings * Update test * Add __init__.pxd * Upd test * Fix test * Upd test * Fix test * Remove ring buffer history from StateC * WIP change arc-eager transitions * Add state tests * Support ternary sent start values * Fix arc eager * Fix NER * Pass oracle cut size for beam * Fix ner test * Fix beam * Improve StateC.clone * Improve StateClass.borrow * Work directly with StateC, not StateClass * Remove print statements * Fix state copy * Improve state class * Refactor parser oracles * Fix arc eager oracle * Fix arc eager oracle * Use a vector to implement the stack * Refactor state data structure * Fix alignment of sent start * Add get_aligned_sent_starts method * Add test for ae oracle when bad sentence starts * Fix sentence segment handling * Avoid Reduce that inserts illegal sentence * Update preset SBD test * Fix test * Remove prints * Fix sent starts in Example * Improve python API of StateClass * Tweak comments and debug output of arc eager * Upd test * Fix state test * Fix state test
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"spacy.pipeline._parser_internals._beam_utils",
"spacy.tokenizer",
"spacy.training.align",
"spacy.training.gold_io",
"spacy.tokens.doc",
"spacy.tokens.span",
"spacy.tokens.token",
"spacy.tokens.span_group",
"spacy.tokens.graph",
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"spacy.tokens.morphanalysis",
"spacy.tokens._retokenize",
"spacy.matcher.matcher",
"spacy.matcher.phrasematcher",
"spacy.matcher.dependencymatcher",
"spacy.symbols",
"spacy.vectors",
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]
COMPILE_OPTIONS = {
"msvc": ["/Ox", "/EHsc"],
"mingw32": ["-O2", "-Wno-strict-prototypes", "-Wno-unused-function"],
"other": ["-O2", "-Wno-strict-prototypes", "-Wno-unused-function"],
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}
LINK_OPTIONS = {"msvc": ["-std=c++11"], "mingw32": ["-std=c++11"], "other": []}
COMPILER_DIRECTIVES = {
"language_level": -3,
"embedsignature": True,
"annotation_typing": False,
"profile": sys.version_info < (3, 12),
}
# Files to copy into the package that are otherwise not included
COPY_FILES = {
ROOT / "setup.cfg": PACKAGE_ROOT / "tests" / "package",
ROOT / "pyproject.toml": PACKAGE_ROOT / "tests" / "package",
ROOT / "requirements.txt": PACKAGE_ROOT / "tests" / "package",
}
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# By subclassing build_extensions we have the actual compiler that will be used which is really known only after finalize_options
# http://stackoverflow.com/questions/724664/python-distutils-how-to-get-a-compiler-that-is-going-to-be-used
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class build_ext_options:
def build_options(self):
for e in self.extensions:
e.extra_compile_args += COMPILE_OPTIONS.get(
self.compiler.compiler_type, COMPILE_OPTIONS["other"]
)
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for e in self.extensions:
e.extra_link_args += LINK_OPTIONS.get(
self.compiler.compiler_type, LINK_OPTIONS["other"]
)
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class build_ext_subclass(build_ext, build_ext_options):
def build_extensions(self):
if self.parallel is None and os.environ.get("SPACY_NUM_BUILD_JOBS") is not None:
self.parallel = int(os.environ.get("SPACY_NUM_BUILD_JOBS"))
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build_ext_options.build_options(self)
build_ext.build_extensions(self)
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# Include the git version in the build (adapted from NumPy)
# Copyright (c) 2005-2020, NumPy Developers.
# BSD 3-Clause license, see licenses/3rd_party_licenses.txt
def write_git_info_py(filename="spacy/git_info.py"):
def _minimal_ext_cmd(cmd):
# construct minimal environment
env = {}
for k in ["SYSTEMROOT", "PATH", "HOME"]:
v = os.environ.get(k)
if v is not None:
env[k] = v
# LANGUAGE is used on win32
env["LANGUAGE"] = "C"
env["LANG"] = "C"
env["LC_ALL"] = "C"
out = subprocess.check_output(cmd, stderr=subprocess.STDOUT, env=env)
return out
git_version = "Unknown"
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if Path(".git").exists():
try:
out = _minimal_ext_cmd(["git", "rev-parse", "--short", "HEAD"])
git_version = out.strip().decode("ascii")
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except Exception:
pass
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elif Path(filename).exists():
# must be a source distribution, use existing version file
try:
a = open(filename, "r")
lines = a.readlines()
git_version = lines[-1].split('"')[1]
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except Exception:
pass
finally:
a.close()
text = """# THIS FILE IS GENERATED FROM SPACY SETUP.PY
#
GIT_VERSION = "%(git_version)s"
"""
a = open(filename, "w")
try:
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a.write(text % {"git_version": git_version})
finally:
a.close()
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def clean(path):
for path in path.glob("**/*"):
Improve spacy.gold (no GoldParse, no json format!) (#5555) * Update errors * Remove beam for now (maybe) Remove beam_utils Update setup.py Remove beam * Remove GoldParse WIP on removing goldparse Get ArcEager compiling after GoldParse excise Update setup.py Get spacy.syntax compiling after removing GoldParse Rename NewExample -> Example and clean up Clean html files Start updating tests Update Morphologizer * fix error numbers * fix merge conflict * informative error when calling to_array with wrong field * fix error catching * fixing language and scoring tests * start testing get_aligned * additional tests for new get_aligned function * Draft create_gold_state for arc_eager oracle * Fix import * Fix import * Remove TokenAnnotation code from nonproj * fixing NER one-to-many alignment * Fix many-to-one IOB codes * fix test for misaligned * attempt to fix cases with weird spaces * fix spaces * test_gold_biluo_different_tokenization works * allow None as BILUO annotation * fixed some tests + WIP roundtrip unit test * add spaces to json output format * minibatch utiltiy can deal with strings, docs or examples * fix augment (needs further testing) * various fixes in scripts - needs to be further tested * fix test_cli * cleanup * correct silly typo * add support for MORPH in to/from_array, fix morphologizer overfitting test * fix tagger * fix entity linker * ensure test keeps working with non-linked entities * pipe() takes docs, not examples * small bug fix * textcat bugfix * throw informative error when running the components with the wrong type of objects * fix parser tests to work with example (most still failing) * fix BiluoPushDown parsing entities * small fixes * bugfix tok2vec * fix renames and simple_ner labels * various small fixes * prevent writing dummy values like deps because that could interfer with sent_start values * fix the fix * implement split_sent with aligned SENT_START attribute * test for split sentences with various alignment issues, works * Return ArcEagerGoldParse from ArcEager * Update parser and NER gold stuff * Draft new GoldCorpus class * add links to to_dict * clean up * fix test checking for variants * Fix oracles * Start updating converters * Move converters under spacy.gold * Move things around * Fix naming * Fix name * Update converter to produce DocBin * Update converters * Allow DocBin to take list of Doc objects. * Make spacy convert output docbin * Fix import * Fix docbin * Fix compile in ArcEager * Fix import * Serialize all attrs by default * Update converter * Remove jsonl converter * Add json2docs converter * Draft Corpus class for DocBin * Work on train script * Update Corpus * Update DocBin * Allocate Doc before starting to add words * Make doc.from_array several times faster * Update train.py * Fix Corpus * Fix parser model * Start debugging arc_eager oracle * Update header * Fix parser declaration * Xfail some tests * Skip tests that cause crashes * Skip test causing segfault * Remove GoldCorpus * Update imports * Update after removing GoldCorpus * Fix module name of corpus * Fix mimport * Work on parser oracle * Update arc_eager oracle * Restore ArcEager.get_cost function * Update transition system * Update test_arc_eager_oracle * Remove beam test * Update test * Unskip * Unskip tests * add links to to_dict * clean up * fix test checking for variants * Allow DocBin to take list of Doc objects. * Fix compile in ArcEager * Serialize all attrs by default Move converters under spacy.gold Move things around Fix naming Fix name Update converter to produce DocBin Update converters Make spacy convert output docbin Fix import Fix docbin Fix import Update converter Remove jsonl converter Add json2docs converter * Allocate Doc before starting to add words * Make doc.from_array several times faster * Start updating converters * Work on train script * Draft Corpus class for DocBin Update Corpus Fix Corpus * Update DocBin Add missing strings when serializing * Update train.py * Fix parser model * Start debugging arc_eager oracle * Update header * Fix parser declaration * Xfail some tests Skip tests that cause crashes Skip test causing segfault * Remove GoldCorpus Update imports Update after removing GoldCorpus Fix module name of corpus Fix mimport * Work on parser oracle Update arc_eager oracle Restore ArcEager.get_cost function Update transition system * Update tests Remove beam test Update test Unskip Unskip tests * Add get_aligned_parse method in Example Fix Example.get_aligned_parse * Add kwargs to Corpus.dev_dataset to match train_dataset * Update nonproj * Use get_aligned_parse in ArcEager * Add another arc-eager oracle test * Remove Example.doc property Remove Example.doc Remove Example.doc Remove Example.doc Remove Example.doc * Update ArcEager oracle Fix Break oracle * Debugging * Fix Corpus * Fix eg.doc * Format * small fixes * limit arg for Corpus * fix test_roundtrip_docs_to_docbin * fix test_make_orth_variants * fix add_label test * Update tests * avoid writing temp dir in json2docs, fixing 4402 test * Update test * Add missing costs to NER oracle * Update test * Work on Example.get_aligned_ner method * Clean up debugging * Xfail tests * Remove prints * Remove print * Xfail some tests * Replace unseen labels for parser * Update test * Update test * Xfail test * Fix Corpus * fix imports * fix docs_to_json * various small fixes * cleanup * Support gold_preproc in Corpus * Support gold_preproc * Pass gold_preproc setting into corpus * Remove debugging * Fix gold_preproc * Fix json2docs converter * Fix convert command * Fix flake8 * Fix import * fix output_dir (converted to Path by typer) * fix var * bugfix: update states after creating golds to avoid out of bounds indexing * Improve efficiency of ArEager oracle * pull merge_sent into iob2docs to avoid Doc creation for each line * fix asserts * bugfix excl Span.end in iob2docs * Support max_length in Corpus * Fix arc_eager oracle * Filter out uannotated sentences in NER * Remove debugging in parser * Simplify NER alignment * Fix conversion of NER data * Fix NER init_gold_batch * Tweak efficiency of precomputable affine * Update onto-json default * Update gold test for NER * Fix parser test * Update test * Add NER data test * Fix convert for single file * Fix test * Hack scorer to avoid evaluating non-nered data * Fix handling of NER data in Example * Output unlabelled spans from O biluo tags in iob_utils * Fix unset variable * Return kept examples from init_gold_batch * Return examples from init_gold_batch * Dont return Example from init_gold_batch * Set spaces on gold doc after conversion * Add test * Fix spaces reading * Improve NER alignment * Improve handling of missing values in NER * Restore the 'cutting' in parser training * Add assertion * Print epochs * Restore random cuts in parser/ner training * Implement Doc.copy * Implement Example.copy * Copy examples at the start of Language.update * Don't unset example docs * Tweak parser model slightly * attempt to fix _guess_spaces * _add_entities_to_doc first, so that links don't get overwritten * fixing get_aligned_ner for one-to-many * fix indexing into x_text * small fix biluo_tags_from_offsets * Add onto-ner config * Simplify NER alignment * Fix NER scoring for partially annotated documents * fix indexing into x_text * fix test_cli failing tests by ignoring spans in doc.ents with empty label * Fix limit * Improve NER alignment * Fix count_train * Remove print statement * fix tests, we're not having nothing but None * fix clumsy fingers * Fix tests * Fix doc.ents * Remove empty docs in Corpus and improve limit * Update config Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
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if path.is_file() and path.suffix in (".so", ".cpp", ".html"):
print(f"Deleting {path.name}")
path.unlink()
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def setup_package():
write_git_info_py()
if len(sys.argv) > 1 and sys.argv[1] == "clean":
return clean(PACKAGE_ROOT)
with (PACKAGE_ROOT / "about.py").open("r") as f:
about = {}
exec(f.read(), about)
for copy_file, target_dir in COPY_FILES.items():
if copy_file.exists():
shutil.copy(str(copy_file), str(target_dir))
print(f"Copied {copy_file} -> {target_dir}")
include_dirs = [
numpy.get_include(),
get_path("include"),
]
ext_modules = []
ext_modules.append(
Extension(
"spacy.matcher.levenshtein",
[
"spacy/matcher/levenshtein.pyx",
"spacy/matcher/polyleven.c",
],
language="c",
include_dirs=include_dirs,
)
)
for name in MOD_NAMES:
mod_path = name.replace(".", "/") + ".pyx"
ext = Extension(
name,
[mod_path],
language="c++",
include_dirs=include_dirs,
extra_compile_args=["-std=c++11"],
)
ext_modules.append(ext)
print("Cythonizing sources")
ext_modules = cythonize(ext_modules, compiler_directives=COMPILER_DIRECTIVES)
setup(
name="spacy",
packages=PACKAGES,
version=about["__version__"],
ext_modules=ext_modules,
cmdclass={"build_ext": build_ext_subclass},
package_data={"": ["*.pyx", "*.pxd", "*.pxi"]},
)
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if __name__ == "__main__":
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setup_package()