spaCy/website/docs/api/kb_in_memory.md

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Refactor KB for easier customization (#11268) * Add implementation of batching + backwards compatibility fixes. Tests indicate issue with batch disambiguation for custom singular entity lookups. * Fix tests. Add distinction w.r.t. batch size. * Remove redundant and add new comments. * Adjust comments. Fix variable naming in EL prediction. * Fix mypy errors. * Remove KB entity type config option. Change return types of candidate retrieval functions to Iterable from Iterator. Fix various other issues. * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/kb_base.pyx Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/kb_base.pyx Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Update spacy/pipeline/entity_linker.py Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Add error messages to NotImplementedErrors. Remove redundant comment. * Fix imports. * Remove redundant comments. * Rename KnowledgeBase to InMemoryLookupKB and BaseKnowledgeBase to KnowledgeBase. * Fix tests. * Update spacy/errors.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Move KB into subdirectory. * Adjust imports after KB move to dedicated subdirectory. * Fix config imports. * Move Candidate + retrieval functions to separate module. Fix other, small issues. * Fix docstrings and error message w.r.t. class names. Fix typing for candidate retrieval functions. * Update spacy/kb/kb_in_memory.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/models/entity_linker.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix typing. * Change typing of mentions to be Span instead of Union[Span, str]. * Update docs. * Update EntityLinker and _architecture docs. * Update website/docs/api/entitylinker.md Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> * Adjust message for E1046. * Re-add section for Candidate in kb.md, add reference to dedicated page. * Update docs and docstrings. * Re-add section + reference for KnowledgeBase.get_alias_candidates() in docs. * Update spacy/kb/candidate.pyx * Update spacy/kb/kb_in_memory.pyx * Update spacy/pipeline/legacy/entity_linker.py * Remove canididate.md. Remove mistakenly added config snippet in entity_linker.py. Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-08 11:38:07 +03:00
---
title: InMemoryLookupKB
teaser:
The default implementation of the KnowledgeBase interface. Stores all
information in-memory.
tag: class
source: spacy/kb/kb_in_memory.pyx
new: 3.5
---
The `InMemoryLookupKB` class inherits from [`KnowledgeBase`](/api/kb) and
implements all of its methods. It stores all KB data in-memory and generates
[`Candidate`](/api/kb#candidate) objects by exactly matching mentions with
entity names. It's highly optimized for both a low memory footprint and speed of
retrieval.
## InMemoryLookupKB.\_\_init\_\_ {#init tag="method"}
Create the knowledge base.
> #### Example
>
> ```python
> from spacy.kb import KnowledgeBase
> vocab = nlp.vocab
> kb = KnowledgeBase(vocab=vocab, entity_vector_length=64)
> ```
| Name | Description |
| ---------------------- | ------------------------------------------------ |
| `vocab` | The shared vocabulary. ~~Vocab~~ |
| `entity_vector_length` | Length of the fixed-size entity vectors. ~~int~~ |
## InMemoryLookupKB.entity_vector_length {#entity_vector_length tag="property"}
The length of the fixed-size entity vectors in the knowledge base.
| Name | Description |
| ----------- | ------------------------------------------------ |
| **RETURNS** | Length of the fixed-size entity vectors. ~~int~~ |
## InMemoryLookupKB.add_entity {#add_entity tag="method"}
Add an entity to the knowledge base, specifying its corpus frequency and entity
vector, which should be of length
[`entity_vector_length`](/api/kb_in_memory#entity_vector_length).
> #### Example
>
> ```python
> kb.add_entity(entity="Q42", freq=32, entity_vector=vector1)
> kb.add_entity(entity="Q463035", freq=111, entity_vector=vector2)
> ```
| Name | Description |
| --------------- | ---------------------------------------------------------- |
| `entity` | The unique entity identifier. ~~str~~ |
| `freq` | The frequency of the entity in a typical corpus. ~~float~~ |
| `entity_vector` | The pretrained vector of the entity. ~~numpy.ndarray~~ |
## InMemoryLookupKB.set_entities {#set_entities tag="method"}
Define the full list of entities in the knowledge base, specifying the corpus
frequency and entity vector for each entity.
> #### Example
>
> ```python
> kb.set_entities(entity_list=["Q42", "Q463035"], freq_list=[32, 111], vector_list=[vector1, vector2])
> ```
| Name | Description |
| ------------- | ---------------------------------------------------------------- |
| `entity_list` | List of unique entity identifiers. ~~Iterable[Union[str, int]]~~ |
| `freq_list` | List of entity frequencies. ~~Iterable[int]~~ |
| `vector_list` | List of entity vectors. ~~Iterable[numpy.ndarray]~~ |
## InMemoryLookupKB.add_alias {#add_alias tag="method"}
Add an alias or mention to the knowledge base, specifying its potential KB
identifiers and their prior probabilities. The entity identifiers should refer
to entities previously added with [`add_entity`](/api/kb_in_memory#add_entity)
or [`set_entities`](/api/kb_in_memory#set_entities). The sum of the prior
probabilities should not exceed 1. Note that an empty string can not be used as
alias.
> #### Example
>
> ```python
> kb.add_alias(alias="Douglas", entities=["Q42", "Q463035"], probabilities=[0.6, 0.3])
> ```
| Name | Description |
| --------------- | --------------------------------------------------------------------------------- |
| `alias` | The textual mention or alias. Can not be the empty string. ~~str~~ |
| `entities` | The potential entities that the alias may refer to. ~~Iterable[Union[str, int]]~~ |
| `probabilities` | The prior probabilities of each entity. ~~Iterable[float]~~ |
## InMemoryLookupKB.\_\_len\_\_ {#len tag="method"}
Get the total number of entities in the knowledge base.
> #### Example
>
> ```python
> total_entities = len(kb)
> ```
| Name | Description |
| ----------- | ----------------------------------------------------- |
| **RETURNS** | The number of entities in the knowledge base. ~~int~~ |
## InMemoryLookupKB.get_entity_strings {#get_entity_strings tag="method"}
Get a list of all entity IDs in the knowledge base.
> #### Example
>
> ```python
> all_entities = kb.get_entity_strings()
> ```
| Name | Description |
| ----------- | --------------------------------------------------------- |
| **RETURNS** | The list of entities in the knowledge base. ~~List[str]~~ |
## InMemoryLookupKB.get_size_aliases {#get_size_aliases tag="method"}
Get the total number of aliases in the knowledge base.
> #### Example
>
> ```python
> total_aliases = kb.get_size_aliases()
> ```
| Name | Description |
| ----------- | ---------------------------------------------------- |
| **RETURNS** | The number of aliases in the knowledge base. ~~int~~ |
## InMemoryLookupKB.get_alias_strings {#get_alias_strings tag="method"}
Get a list of all aliases in the knowledge base.
> #### Example
>
> ```python
> all_aliases = kb.get_alias_strings()
> ```
| Name | Description |
| ----------- | -------------------------------------------------------- |
| **RETURNS** | The list of aliases in the knowledge base. ~~List[str]~~ |
## InMemoryLookupKB.get_candidates {#get_candidates tag="method"}
Given a certain textual mention as input, retrieve a list of candidate entities
of type [`Candidate`](/api/kb#candidate). Wraps
[`get_alias_candidates()`](/api/kb_in_memory#get_alias_candidates).
> #### Example
>
> ```python
> from spacy.lang.en import English
> nlp = English()
> doc = nlp("Douglas Adams wrote 'The Hitchhiker's Guide to the Galaxy'.")
> candidates = kb.get_candidates(doc[0:2])
> ```
| Name | Description |
| ----------- | -------------------------------------------------------------------- |
| `mention` | The textual mention or alias. ~~Span~~ |
| **RETURNS** | An iterable of relevant `Candidate` objects. ~~Iterable[Candidate]~~ |
## InMemoryLookupKB.get_candidates_batch {#get_candidates_batch tag="method"}
Same as [`get_candidates()`](/api/kb_in_memory#get_candidates), but for an
arbitrary number of mentions. The [`EntityLinker`](/api/entitylinker) component
will call `get_candidates_batch()` instead of `get_candidates()`, if the config
parameter `candidates_batch_size` is greater or equal than 1.
The default implementation of `get_candidates_batch()` executes
`get_candidates()` in a loop. We recommend implementing a more efficient way to
retrieve candidates for multiple mentions at once, if performance is of concern
to you.
> #### Example
>
> ```python
> from spacy.lang.en import English
> nlp = English()
> doc = nlp("Douglas Adams wrote 'The Hitchhiker's Guide to the Galaxy'.")
> candidates = kb.get_candidates((doc[0:2], doc[3:]))
> ```
| Name | Description |
| ----------- | -------------------------------------------------------------------------------------------- |
| `mentions` | The textual mention or alias. ~~Iterable[Span]~~ |
| **RETURNS** | An iterable of iterable with relevant `Candidate` objects. ~~Iterable[Iterable[Candidate]]~~ |
## InMemoryLookupKB.get_alias_candidates {#get_alias_candidates tag="method"}
Given a certain textual mention as input, retrieve a list of candidate entities
of type [`Candidate`](/api/kb#candidate).
> #### Example
>
> ```python
> candidates = kb.get_alias_candidates("Douglas")
> ```
| Name | Description |
| ----------- | ------------------------------------------------------------- |
| `alias` | The textual mention or alias. ~~str~~ |
| **RETURNS** | The list of relevant `Candidate` objects. ~~List[Candidate]~~ |
## InMemoryLookupKB.get_vector {#get_vector tag="method"}
Given a certain entity ID, retrieve its pretrained entity vector.
> #### Example
>
> ```python
> vector = kb.get_vector("Q42")
> ```
| Name | Description |
| ----------- | ------------------------------------ |
| `entity` | The entity ID. ~~str~~ |
| **RETURNS** | The entity vector. ~~numpy.ndarray~~ |
## InMemoryLookupKB.get_vectors {#get_vectors tag="method"}
Same as [`get_vector()`](/api/kb_in_memory#get_vector), but for an arbitrary
number of entity IDs.
The default implementation of `get_vectors()` executes `get_vector()` in a loop.
We recommend implementing a more efficient way to retrieve vectors for multiple
entities at once, if performance is of concern to you.
> #### Example
>
> ```python
> vectors = kb.get_vectors(("Q42", "Q3107329"))
> ```
| Name | Description |
| ----------- | --------------------------------------------------------- |
| `entities` | The entity IDs. ~~Iterable[str]~~ |
| **RETURNS** | The entity vectors. ~~Iterable[Iterable[numpy.ndarray]]~~ |
## InMemoryLookupKB.get_prior_prob {#get_prior_prob tag="method"}
Given a certain entity ID and a certain textual mention, retrieve the prior
probability of the fact that the mention links to the entity ID.
> #### Example
>
> ```python
> probability = kb.get_prior_prob("Q42", "Douglas")
> ```
| Name | Description |
| ----------- | ------------------------------------------------------------------------- |
| `entity` | The entity ID. ~~str~~ |
| `alias` | The textual mention or alias. ~~str~~ |
| **RETURNS** | The prior probability of the `alias` referring to the `entity`. ~~float~~ |
## InMemoryLookupKB.to_disk {#to_disk tag="method"}
Save the current state of the knowledge base to a directory.
> #### Example
>
> ```python
> kb.to_disk(path)
> ```
| Name | Description |
| --------- | ------------------------------------------------------------------------------------------------------------------------------------------ |
| `path` | A path to a directory, which will be created if it doesn't exist. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
| `exclude` | List of components to exclude. ~~Iterable[str]~~ |
## InMemoryLookupKB.from_disk {#from_disk tag="method"}
Restore the state of the knowledge base from a given directory. Note that the
[`Vocab`](/api/vocab) should also be the same as the one used to create the KB.
> #### Example
>
> ```python
> from spacy.vocab import Vocab
> vocab = Vocab().from_disk("/path/to/vocab")
> kb = FullyImplementedKB(vocab=vocab, entity_vector_length=64)
> kb.from_disk("/path/to/kb")
> ```
| Name | Description |
| ----------- | ----------------------------------------------------------------------------------------------- |
| `loc` | A path to a directory. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
| `exclude` | List of components to exclude. ~~Iterable[str]~~ |
| **RETURNS** | The modified `KnowledgeBase` object. ~~KnowledgeBase~~ |