spaCy/spacy/cli/project/run.py

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from typing import Optional, List, Dict, Sequence, Any, Iterable
from pathlib import Path
from wasabi import msg
import sys
import srsly
import typer
from ... import about
from ...git_info import GIT_VERSION
from ...util import working_dir, run_command, split_command, is_cwd, join_command
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from ...util import SimpleFrozenList, is_minor_version_match, ENV_VARS
from ...util import check_bool_env_var, SimpleFrozenDict
from .._util import PROJECT_FILE, PROJECT_LOCK, load_project_config, get_hash
from .._util import get_checksum, project_cli, Arg, Opt, COMMAND, parse_config_overrides
@project_cli.command(
"run", context_settings={"allow_extra_args": True, "ignore_unknown_options": True}
)
def project_run_cli(
# fmt: off
ctx: typer.Context, # This is only used to read additional arguments
subcommand: str = Arg(None, help=f"Name of command defined in the {PROJECT_FILE}"),
project_dir: Path = Arg(Path.cwd(), help="Location of project directory. Defaults to current working directory.", exists=True, file_okay=False),
force: bool = Opt(False, "--force", "-F", help="Force re-running steps, even if nothing changed"),
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dry: bool = Opt(False, "--dry", "-D", help="Perform a dry run and don't execute scripts"),
show_help: bool = Opt(False, "--help", help="Show help message and available subcommands")
# fmt: on
):
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"""Run a named command or workflow defined in the project.yml. If a workflow
name is specified, all commands in the workflow are run, in order. If
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commands define dependencies and/or outputs, they will only be re-run if
state has changed.
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DOCS: https://spacy.io/api/cli#project-run
"""
if show_help or not subcommand:
print_run_help(project_dir, subcommand)
else:
overrides = parse_config_overrides(ctx.args)
project_run(project_dir, subcommand, overrides=overrides, force=force, dry=dry)
def project_run(
project_dir: Path,
subcommand: str,
*,
overrides: Dict[str, Any] = SimpleFrozenDict(),
force: bool = False,
dry: bool = False,
capture: bool = False,
) -> None:
"""Run a named script defined in the project.yml. If the script is part
of the default pipeline (defined in the "run" section), DVC is used to
execute the command, so it can determine whether to rerun it. It then
calls into "exec" to execute it.
project_dir (Path): Path to project directory.
subcommand (str): Name of command to run.
force (bool): Force re-running, even if nothing changed.
dry (bool): Perform a dry run and don't execute commands.
capture (bool): Whether to capture the output and errors of individual commands.
If False, the stdout and stderr will not be redirected, and if there's an error,
sys.exit will be called with the return code. You should use capture=False
when you want to turn over execution to the command, and capture=True
when you want to run the command more like a function.
"""
config = load_project_config(project_dir, overrides=overrides)
commands = {cmd["name"]: cmd for cmd in config.get("commands", [])}
workflows = config.get("workflows", {})
validate_subcommand(commands.keys(), workflows.keys(), subcommand)
if subcommand in workflows:
msg.info(f"Running workflow '{subcommand}'")
for cmd in workflows[subcommand]:
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project_run(project_dir, cmd, force=force, dry=dry, capture=capture)
else:
cmd = commands[subcommand]
for dep in cmd.get("deps", []):
if not (project_dir / dep).exists():
err = f"Missing dependency specified by command '{subcommand}': {dep}"
err_help = "Maybe you forgot to run the 'project assets' command or a previous step?"
err_kwargs = {"exits": 1} if not dry else {}
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msg.fail(err, err_help, **err_kwargs)
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check_spacy_commit = check_bool_env_var(ENV_VARS.PROJECT_USE_GIT_VERSION)
with working_dir(project_dir) as current_dir:
msg.divider(subcommand)
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rerun = check_rerun(current_dir, cmd, check_spacy_commit=check_spacy_commit)
if not rerun and not force:
msg.info(f"Skipping '{cmd['name']}': nothing changed")
else:
run_commands(cmd["script"], dry=dry, capture=capture)
if not dry:
update_lockfile(current_dir, cmd)
def print_run_help(project_dir: Path, subcommand: Optional[str] = None) -> None:
"""Simulate a CLI help prompt using the info available in the project.yml.
project_dir (Path): The project directory.
subcommand (Optional[str]): The subcommand or None. If a subcommand is
provided, the subcommand help is shown. Otherwise, the top-level help
and a list of available commands is printed.
"""
config = load_project_config(project_dir)
config_commands = config.get("commands", [])
commands = {cmd["name"]: cmd for cmd in config_commands}
workflows = config.get("workflows", {})
project_loc = "" if is_cwd(project_dir) else project_dir
if subcommand:
validate_subcommand(commands.keys(), workflows.keys(), subcommand)
print(f"Usage: {COMMAND} project run {subcommand} {project_loc}")
if subcommand in commands:
help_text = commands[subcommand].get("help")
if help_text:
print(f"\n{help_text}\n")
elif subcommand in workflows:
steps = workflows[subcommand]
print(f"\nWorkflow consisting of {len(steps)} commands:")
steps_data = [
(f"{i + 1}. {step}", commands[step].get("help", ""))
for i, step in enumerate(steps)
]
msg.table(steps_data)
help_cmd = f"{COMMAND} project run [COMMAND] {project_loc} --help"
print(f"For command details, run: {help_cmd}")
else:
print("")
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title = config.get("title")
if title:
print(f"{title}\n")
if config_commands:
print(f"Available commands in {PROJECT_FILE}")
print(f"Usage: {COMMAND} project run [COMMAND] {project_loc}")
msg.table([(cmd["name"], cmd.get("help", "")) for cmd in config_commands])
if workflows:
print(f"Available workflows in {PROJECT_FILE}")
print(f"Usage: {COMMAND} project run [WORKFLOW] {project_loc}")
msg.table([(name, " -> ".join(steps)) for name, steps in workflows.items()])
def run_commands(
commands: Iterable[str] = SimpleFrozenList(),
silent: bool = False,
dry: bool = False,
capture: bool = False,
) -> None:
"""Run a sequence of commands in a subprocess, in order.
commands (List[str]): The string commands.
silent (bool): Don't print the commands.
dry (bool): Perform a dry run and don't execut anything.
capture (bool): Whether to capture the output and errors of individual commands.
If False, the stdout and stderr will not be redirected, and if there's an error,
sys.exit will be called with the return code. You should use capture=False
when you want to turn over execution to the command, and capture=True
when you want to run the command more like a function.
"""
for command in commands:
command = split_command(command)
# Not sure if this is needed or a good idea. Motivation: users may often
# use commands in their config that reference "python" and we want to
# make sure that it's always executing the same Python that spaCy is
# executed with and the pip in the same env, not some other Python/pip.
# Also ensures cross-compatibility if user 1 writes "python3" (because
# that's how it's set up on their system), and user 2 without the
# shortcut tries to re-run the command.
if len(command) and command[0] in ("python", "python3"):
command[0] = sys.executable
elif len(command) and command[0] in ("pip", "pip3"):
command = [sys.executable, "-m", "pip", *command[1:]]
if not silent:
print(f"Running command: {join_command(command)}")
if not dry:
run_command(command, capture=capture)
def validate_subcommand(
commands: Sequence[str], workflows: Sequence[str], subcommand: str
) -> None:
"""Check that a subcommand is valid and defined. Raises an error otherwise.
commands (Sequence[str]): The available commands.
subcommand (str): The subcommand.
"""
if not commands and not workflows:
msg.fail(f"No commands or workflows defined in {PROJECT_FILE}", exits=1)
if subcommand not in commands and subcommand not in workflows:
help_msg = []
if commands:
help_msg.append(f"Available commands: {', '.join(commands)}")
if workflows:
help_msg.append(f"Available workflows: {', '.join(workflows)}")
msg.fail(
f"Can't find command or workflow '{subcommand}' in {PROJECT_FILE}",
". ".join(help_msg),
exits=1,
)
def check_rerun(
project_dir: Path,
command: Dict[str, Any],
*,
check_spacy_version: bool = True,
check_spacy_commit: bool = False,
) -> bool:
"""Check if a command should be rerun because its settings or inputs/outputs
changed.
project_dir (Path): The current project directory.
command (Dict[str, Any]): The command, as defined in the project.yml.
strict_version (bool):
RETURNS (bool): Whether to re-run the command.
"""
lock_path = project_dir / PROJECT_LOCK
if not lock_path.exists(): # We don't have a lockfile, run command
return True
data = srsly.read_yaml(lock_path)
if command["name"] not in data: # We don't have info about this command
return True
entry = data[command["name"]]
# Always run commands with no outputs (otherwise they'd always be skipped)
if not entry.get("outs", []):
return True
# Always rerun if spaCy version or commit hash changed
spacy_v = entry.get("spacy_version")
commit = entry.get("spacy_git_version")
if check_spacy_version and not is_minor_version_match(spacy_v, about.__version__):
info = f"({spacy_v} in {PROJECT_LOCK}, {about.__version__} current)"
msg.info(f"Re-running '{command['name']}': spaCy minor version changed {info}")
return True
if check_spacy_commit and commit != GIT_VERSION:
info = f"({commit} in {PROJECT_LOCK}, {GIT_VERSION} current)"
msg.info(f"Re-running '{command['name']}': spaCy commit changed {info}")
return True
# If the entry in the lockfile matches the lockfile entry that would be
# generated from the current command, we don't rerun because it means that
# all inputs/outputs, hashes and scripts are the same and nothing changed
lock_entry = get_lock_entry(project_dir, command)
exclude = ["spacy_version", "spacy_git_version"]
return get_hash(lock_entry, exclude=exclude) != get_hash(entry, exclude=exclude)
def update_lockfile(project_dir: Path, command: Dict[str, Any]) -> None:
"""Update the lockfile after running a command. Will create a lockfile if
it doesn't yet exist and will add an entry for the current command, its
script and dependencies/outputs.
project_dir (Path): The current project directory.
command (Dict[str, Any]): The command, as defined in the project.yml.
"""
lock_path = project_dir / PROJECT_LOCK
if not lock_path.exists():
srsly.write_yaml(lock_path, {})
data = {}
else:
data = srsly.read_yaml(lock_path)
data[command["name"]] = get_lock_entry(project_dir, command)
srsly.write_yaml(lock_path, data)
def get_lock_entry(project_dir: Path, command: Dict[str, Any]) -> Dict[str, Any]:
"""Get a lockfile entry for a given command. An entry includes the command,
the script (command steps) and a list of dependencies and outputs with
their paths and file hashes, if available. The format is based on the
dvc.lock files, to keep things consistent.
project_dir (Path): The current project directory.
command (Dict[str, Any]): The command, as defined in the project.yml.
RETURNS (Dict[str, Any]): The lockfile entry.
"""
deps = get_fileinfo(project_dir, command.get("deps", []))
outs = get_fileinfo(project_dir, command.get("outputs", []))
outs_nc = get_fileinfo(project_dir, command.get("outputs_no_cache", []))
return {
"cmd": f"{COMMAND} run {command['name']}",
"script": command["script"],
"deps": deps,
"outs": [*outs, *outs_nc],
"spacy_version": about.__version__,
"spacy_git_version": GIT_VERSION,
}
def get_fileinfo(project_dir: Path, paths: List[str]) -> List[Dict[str, str]]:
"""Generate the file information for a list of paths (dependencies, outputs).
Includes the file path and the file's checksum.
project_dir (Path): The current project directory.
paths (List[str]): The file paths.
RETURNS (List[Dict[str, str]]): The lockfile entry for a file.
"""
data = []
for path in paths:
file_path = project_dir / path
md5 = get_checksum(file_path) if file_path.exists() else None
data.append({"path": path, "md5": md5})
return data