spaCy/spacy/pipeline/pipe.pyx

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# cython: infer_types=True, binding=True
from typing import Callable, Dict, Iterable, Iterator, Tuple, Union
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import srsly
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
from ..tokens.doc cimport Doc
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from ..errors import Errors
from ..language import Language
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from ..training import Example
from ..util import raise_error
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
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cdef class Pipe:
"""This class is a base class and not instantiated directly. It provides
an interface for pipeline components to implement.
Trainable pipeline components like the EntityRecognizer or TextCategorizer
should inherit from the subclass 'TrainablePipe'.
DOCS: https://spacy.io/api/pipe
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
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"""
def __call__(self, Doc doc) -> Doc:
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"""Apply the pipe to one document. The document is modified in place,
and returned. This usually happens under the hood when the nlp object
is called on a text and all components are applied to the Doc.
doc (Doc): The Doc to process.
RETURNS (Doc): The processed Doc.
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
DOCS: https://spacy.io/api/pipe#call
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
"""
raise NotImplementedError(Errors.E931.format(parent="Pipe", method="__call__", name=self.name))
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
def pipe(self, stream: Iterable[Doc], *, batch_size: int = 128) -> Iterator[Doc]:
"""Apply the pipe to a stream of documents. This usually happens under
the hood when the nlp object is called on a text and all components are
applied to the Doc.
stream (Iterable[Doc]): A stream of documents.
batch_size (int): The number of documents to buffer.
YIELDS (Doc): Processed documents in order.
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
DOCS: https://spacy.io/api/pipe#pipe
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
"""
error_handler = self.get_error_handler()
for doc in stream:
try:
doc = self(doc)
yield doc
except Exception as e:
error_handler(self.name, self, [doc], e)
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
def initialize(self, get_examples: Callable[[], Iterable[Example]], *, nlp: Language = None):
"""Initialize the pipe. For non-trainable components, this method
is optional. For trainable components, which should inherit
from the subclass TrainablePipe, the provided data examples
should be used to ensure that the internal model is initialized
properly and all input/output dimensions throughout the network are
inferred.
get_examples (Callable[[], Iterable[Example]]): Function that
returns a representative sample of gold-standard Example objects.
2020-09-29 13:20:26 +03:00
nlp (Language): The current nlp object the component is part of.
DOCS: https://spacy.io/api/pipe#initialize
"""
pass
def score(self, examples: Iterable[Example], **kwargs) -> Dict[str, Union[float, Dict[str, float]]]:
"""Score a batch of examples.
examples (Iterable[Example]): The examples to score.
RETURNS (Dict[str, Any]): The scores.
DOCS: https://spacy.io/api/pipe#score
"""
if hasattr(self, "scorer") and self.scorer is not None:
scorer_kwargs = {}
# use default settings from cfg (e.g., threshold)
if hasattr(self, "cfg") and isinstance(self.cfg, dict):
scorer_kwargs.update(self.cfg)
# override self.cfg["labels"] with self.labels
if hasattr(self, "labels"):
scorer_kwargs["labels"] = self.labels
# override with kwargs settings
scorer_kwargs.update(kwargs)
return self.scorer(examples, **scorer_kwargs)
Refactor the Scorer to improve flexibility (#5731) * Refactor the Scorer to improve flexibility Refactor the `Scorer` to improve flexibility for arbitrary pipeline components. * Individual pipeline components provide their own `evaluate` methods that score a list of `Example`s and return a dictionary of scores * `Scorer` is initialized either: * with a provided pipeline containing components to be scored * with a default pipeline containing the built-in statistical components (senter, tagger, morphologizer, parser, ner) * `Scorer.score` evaluates a list of `Example`s and returns a dictionary of scores referring to the scores provided by the components in the pipeline Significant differences: * `tags_acc` is renamed to `tag_acc` to be consistent with `token_acc` and the new `morph_acc`, `pos_acc`, and `lemma_acc` * Scoring is no longer cumulative: `Scorer.score` scores a list of examples rather than a single example and does not retain any state about previously scored examples * PRF values in the returned scores are no longer multiplied by 100 * Add kwargs to Morphologizer.evaluate * Create generalized scoring methods in Scorer * Generalized static scoring methods are added to `Scorer` * Methods require an attribute (either on Token or Doc) that is used to key the returned scores Naming differences: * `uas`, `las`, and `las_per_type` in the scores dict are renamed to `dep_uas`, `dep_las`, and `dep_las_per_type` Scoring differences: * `Doc.sents` is now scored as spans rather than on sentence-initial token positions so that `Doc.sents` and `Doc.ents` can be scored with the same method (this lowers scores since a single incorrect sentence start results in two incorrect spans) * Simplify / extend hasattr check for eval method * Add hasattr check to tokenizer scoring * Simplify to hasattr check for component scoring * Reset Example alignment if docs are set Reset the Example alignment if either doc is set in case the tokenization has changed. * Add PRF tokenization scoring for tokens as spans Add PRF scores for tokens as character spans. The scores are: * token_acc: # correct tokens / # gold tokens * token_p/r/f: PRF for (token.idx, token.idx + len(token)) * Add docstring to Scorer.score_tokenization * Rename component.evaluate() to component.score() * Update Scorer API docs * Update scoring for positive_label in textcat * Fix TextCategorizer.score kwargs * Update Language.evaluate docs * Update score names in default config
2020-07-25 13:53:02 +03:00
return {}
@property
def is_distillable(self) -> bool:
return False
@property
def is_trainable(self) -> bool:
return False
@property
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167) * 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 16:21:40 +03:00
def labels(self) -> Tuple[str, ...]:
return tuple()
@property
def hide_labels(self) -> bool:
return False
@property
def label_data(self):
"""Optional JSON-serializable data that would be sufficient to recreate
the label set if provided to the `pipe.initialize()` method.
"""
return None
Refactor pipeline components, config and language data (#5759) * Update with WIP * Update with WIP * Update with pipeline serialization * Update types and pipe factories * Add deep merge, tidy up and add tests * Fix pipe creation from config * Don't validate default configs on load * Update spacy/language.py Co-authored-by: Ines Montani <ines@ines.io> * Adjust factory/component meta error * Clean up factory args and remove defaults * Add test for failing empty dict defaults * Update pipeline handling and methods * provide KB as registry function instead of as object * small change in test to make functionality more clear * update example script for EL configuration * Fix typo * Simplify test * Simplify test * splitting pipes.pyx into separate files * moving default configs to each component file * fix batch_size type * removing default values from component constructors where possible (TODO: test 4725) * skip instead of xfail * Add test for config -> nlp with multiple instances * pipeline.pipes -> pipeline.pipe * Tidy up, document, remove kwargs * small cleanup/generalization for Tok2VecListener * use DEFAULT_UPSTREAM field * revert to avoid circular imports * Fix tests * Replace deprecated arg * Make model dirs require config * fix pickling of keyword-only arguments in constructor * WIP: clean up and integrate full config * Add helper to handle function args more reliably Now also includes keyword-only args * Fix config composition and serialization * Improve config debugging and add visual diff * Remove unused defaults and fix type * Remove pipeline and factories from meta * Update spacy/default_config.cfg Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/default_config.cfg * small UX edits * avoid printing stack trace for debug CLI commands * Add support for language-specific factories * specify the section of the config which holds the model to debug * WIP: add Language.from_config * Update with language data refactor WIP * Auto-format * Add backwards-compat handling for Language.factories * Update morphologizer.pyx * Fix morphologizer * Update and simplify lemmatizers * Fix Japanese tests * Port over tagger changes * Fix Chinese and tests * Update to latest Thinc * WIP: xfail first Russian lemmatizer test * Fix component-specific overrides * fix nO for output layers in debug_model * Fix default value * Fix tests and don't pass objects in config * Fix deep merging * Fix lemma lookup data registry Only load the lookups if an entry is available in the registry (and if spacy-lookups-data is installed) * Add types * Add Vocab.from_config * Fix typo * Fix tests * Make config copying more elegant * Fix pipe analysis * Fix lemmatizers and is_base_form * WIP: move language defaults to config * Fix morphology type * Fix vocab * Remove comment * Update to latest Thinc * Add morph rules to config * Tidy up * Remove set_morphology option from tagger factory * Hack use_gpu * Move [pipeline] to top-level block and make [nlp.pipeline] list Allows separating component blocks from component order – otherwise, ordering the config would mean a changed component order, which is bad. Also allows initial config to define more components and not use all of them * Fix use_gpu and resume in CLI * Auto-format * Remove resume from config * Fix formatting and error * [pipeline] -> [components] * Fix types * Fix tagger test: requires set_morphology? Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2020-07-22 14:42:59 +03:00
def _require_labels(self) -> None:
"""Raise an error if this component has no labels defined."""
if not self.labels or list(self.labels) == [""]:
raise ValueError(Errors.E143.format(name=self.name))
def set_error_handler(self, error_handler: Callable) -> None:
"""Set an error handler function.
error_handler (Callable[[str, Callable[[Doc], Doc], List[Doc], Exception], None]):
Function that deals with a failing batch of documents. This callable function should take in
the component's name, the component itself, the offending batch of documents, and the exception
that was thrown.
DOCS: https://spacy.io/api/pipe#set_error_handler
"""
self.error_handler = error_handler
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167) * 🚨 Ignore all existing Mypy errors * 🏗 Add Mypy check to CI * Add types-mock and types-requests as dev requirements * Add additional type ignore directives * Add types packages to dev-only list in reqs test * Add types-dataclasses for python 3.6 * Add ignore to pretrain * 🏷 Improve type annotation on `run_command` helper The `run_command` helper previously declared that it returned an `Optional[subprocess.CompletedProcess]`, but it isn't actually possible for the function to return `None`. These changes modify the type annotation of the `run_command` helper and remove all now-unnecessary `# type: ignore` directives. * 🔧 Allow variable type redefinition in limited contexts These changes modify how Mypy is configured to allow variables to have their type automatically redefined under certain conditions. The Mypy documentation contains the following example: ```python def process(items: List[str]) -> None: # 'items' has type List[str] items = [item.split() for item in items] # 'items' now has type List[List[str]] ... ``` This configuration change is especially helpful in reducing the number of `# type: ignore` directives needed to handle the common pattern of: * Accepting a filepath as a string * Overwriting the variable using `filepath = ensure_path(filepath)` These changes enable redefinition and remove all `# type: ignore` directives rendered redundant by this change. * 🏷 Add type annotation to converters mapping * 🚨 Fix Mypy error in convert CLI argument verification * 🏷 Improve type annotation on `resolve_dot_names` helper * 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors` * 🏷 Add type annotations for more `Vocab` attributes * 🏷 Add loose type annotation for gold data compilation * 🏷 Improve `_format_labels` type annotation * 🏷 Fix `get_lang_class` type annotation * 🏷 Loosen return type of `Language.evaluate` * 🏷 Don't accept `Scorer` in `handle_scores_per_type` * 🏷 Add `string_to_list` overloads * 🏷 Fix non-Optional command-line options * 🙈 Ignore redefinition of `wandb_logger` in `loggers.py` * ➕ Install `typing_extensions` in Python 3.8+ The `typing_extensions` package states that it should be used when "writing code that must be compatible with multiple Python versions". Since SpaCy needs to support multiple Python versions, it should be used when newer `typing` module members are required. One example of this is `Literal`, which is available starting with Python 3.8. Previously SpaCy tried to import `Literal` from `typing`, falling back to `typing_extensions` if the import failed. However, Mypy doesn't seem to be able to understand what `Literal` means when the initial import means. Therefore, these changes modify how `compat` imports `Literal` by always importing it from `typing_extensions`. These changes also modify how `typing_extensions` is installed, so that it is a requirement for all Python versions, including those greater than or equal to 3.8. * 🏷 Improve type annotation for `Language.pipe` These changes add a missing overload variant to the type signature of `Language.pipe`. Additionally, the type signature is enhanced to allow type checkers to differentiate between the two overload variants based on the `as_tuple` parameter. Fixes #8772 * ➖ Don't install `typing-extensions` in Python 3.8+ After more detailed analysis of how to implement Python version-specific type annotations using SpaCy, it has been determined that by branching on a comparison against `sys.version_info` can be statically analyzed by Mypy well enough to enable us to conditionally use `typing_extensions.Literal`. This means that we no longer need to install `typing_extensions` for Python versions greater than or equal to 3.8! 🎉 These changes revert previous changes installing `typing-extensions` regardless of Python version and modify how we import the `Literal` type to ensure that Mypy treats it properly. * resolve mypy errors for Strict pydantic types * refactor code to avoid missing return statement * fix types of convert CLI command * avoid list-set confustion in debug_data * fix typo and formatting * small fixes to avoid type ignores * fix types in profile CLI command and make it more efficient * type fixes in projects CLI * put one ignore back * type fixes for render * fix render types - the sequel * fix BaseDefault in language definitions * fix type of noun_chunks iterator - yields tuple instead of span * fix types in language-specific modules * 🏷 Expand accepted inputs of `get_string_id` `get_string_id` accepts either a string (in which case it returns its ID) or an ID (in which case it immediately returns the ID). These changes extend the type annotation of `get_string_id` to indicate that it can accept either strings or IDs. * 🏷 Handle override types in `combine_score_weights` The `combine_score_weights` function allows users to pass an `overrides` mapping to override data extracted from the `weights` argument. Since it allows `Optional` dictionary values, the return value may also include `Optional` dictionary values. These changes update the type annotations for `combine_score_weights` to reflect this fact. * 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer` * 🏷 Fix redefinition of `wandb_logger` These changes fix the redefinition of `wandb_logger` by giving a separate name to each `WandbLogger` version. For backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` as `wandb_logger` for now. * more fixes for typing in language * type fixes in model definitions * 🏷 Annotate `_RandomWords.probs` as `NDArray` * 🏷 Annotate `tok2vec` layers to help Mypy * 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6 Also remove an import that I forgot to move to the top of the module 😅 * more fixes for matchers and other pipeline components * quick fix for entity linker * fixing types for spancat, textcat, etc * bugfix for tok2vec * type annotations for scorer * add runtime_checkable for Protocol * type and import fixes in tests * mypy fixes for training utilities * few fixes in util * fix import * 🐵 Remove unused `# type: ignore` directives * 🏷 Annotate `Language._components` * 🏷 Annotate `spacy.pipeline.Pipe` * add doc as property to span.pyi * small fixes and cleanup * explicit type annotations instead of via comment Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 16:21:40 +03:00
def get_error_handler(self) -> Callable:
"""Retrieve the error handler function.
RETURNS (Callable): The error handler, or if it's not set a default function that just reraises.
DOCS: https://spacy.io/api/pipe#get_error_handler
"""
if hasattr(self, "error_handler"):
return self.error_handler
return raise_error
def deserialize_config(path):
if path.exists():
return srsly.read_json(path)
else:
return {}