Merge remote-tracking branch 'upstream/master' into bugfix/noun-chunks

# Conflicts:
#	spacy/lang/el/syntax_iterators.py
#	spacy/lang/en/syntax_iterators.py
#	spacy/lang/fa/syntax_iterators.py
#	spacy/lang/fr/syntax_iterators.py
#	spacy/lang/id/syntax_iterators.py
#	spacy/lang/nb/syntax_iterators.py
#	spacy/lang/sv/syntax_iterators.py

.github/contributors/kevinlu1248.md

@@ -0,0 +1,106 @@
+# spaCy contributor agreement
+
+This spaCy Contributor Agreement (**"SCA"**) is based on the
+[Oracle Contributor Agreement](http://www.oracle.com/technetwork/oca-405177.pdf).
+The SCA applies to any contribution that you make to any product or project
+managed by us (the **"project"**), and sets out the intellectual property rights
+you grant to us in the contributed materials. The term **"us"** shall mean
+[ExplosionAI GmbH](https://explosion.ai/legal). The term
+**"you"** shall mean the person or entity identified below.
+
+If you agree to be bound by these terms, fill in the information requested
+below and include the filled-in version with your first pull request, under the
+folder [`.github/contributors/`](/.github/contributors/). The name of the file
+should be your GitHub username, with the extension `.md`. For example, the user
+example_user would create the file `.github/contributors/example_user.md`.
+
+Read this agreement carefully before signing. These terms and conditions
+constitute a binding legal agreement.
+
+## Contributor Agreement
+
+1. The term "contribution" or "contributed materials" means any source code,
+object code, patch, tool, sample, graphic, specification, manual,
+documentation, or any other material posted or submitted by you to the project.
+
+2. With respect to any worldwide copyrights, or copyright applications and
+registrations, in your contribution:
+
+    * you hereby assign to us joint ownership, and to the extent that such
+    assignment is or becomes invalid, ineffective or unenforceable, you hereby
+    grant to us a perpetual, irrevocable, non-exclusive, worldwide, no-charge,
+    royalty-free, unrestricted license to exercise all rights under those
+    copyrights. This includes, at our option, the right to sublicense these same
+    rights to third parties through multiple levels of sublicensees or other
+    licensing arrangements;
+
+    * you agree that each of us can do all things in relation to your
+    contribution as if each of us were the sole owners, and if one of us makes
+    a derivative work of your contribution, the one who makes the derivative
+    work (or has it made will be the sole owner of that derivative work;
+
+    * you agree that you will not assert any moral rights in your contribution
+    against us, our licensees or transferees;
+
+    * you agree that we may register a copyright in your contribution and
+    exercise all ownership rights associated with it; and
+
+    * you agree that neither of us has any duty to consult with, obtain the
+    consent of, pay or render an accounting to the other for any use or
+    distribution of your contribution.
+
+3. With respect to any patents you own, or that you can license without payment
+to any third party, you hereby grant to us a perpetual, irrevocable,
+non-exclusive, worldwide, no-charge, royalty-free license to:
+
+    * make, have made, use, sell, offer to sell, import, and otherwise transfer
+    your contribution in whole or in part, alone or in combination with or
+    included in any product, work or materials arising out of the project to
+    which your contribution was submitted, and
+
+    * at our option, to sublicense these same rights to third parties through
+    multiple levels of sublicensees or other licensing arrangements.
+
+4. Except as set out above, you keep all right, title, and interest in your
+contribution. The rights that you grant to us under these terms are effective
+on the date you first submitted a contribution to us, even if your submission
+took place before the date you sign these terms.
+
+5. You covenant, represent, warrant and agree that:
+
+    * Each contribution that you submit is and shall be an original work of
+    authorship and you can legally grant the rights set out in this SCA;
+
+    * to the best of your knowledge, each contribution will not violate any
+    third party's copyrights, trademarks, patents, or other intellectual
+    property rights; and
+
+    * each contribution shall be in compliance with U.S. export control laws and
+    other applicable export and import laws. You agree to notify us if you
+    become aware of any circumstance which would make any of the foregoing
+    representations inaccurate in any respect. We may publicly disclose your
+    participation in the project, including the fact that you have signed the SCA.
+
+6. This SCA is governed by the laws of the State of California and applicable
+U.S. Federal law. Any choice of law rules will not apply.
+
+7. Please place an “x” on one of the applicable statement below. Please do NOT
+mark both statements:
+
+    * [x] I am signing on behalf of myself as an individual and no other person
+    or entity, including my employer, has or will have rights with respect to my
+    contributions.
+
+    * [ ] I am signing on behalf of my employer or a legal entity and I have the
+    actual authority to contractually bind that entity.
+
+## Contributor Details
+
+| Field                          | Entry                |
+|------------------------------- | -------------------- |
+| Name                           |              Kevin Lu|
+| Company name (if applicable)   |                      |
+| Title or role (if applicable)  |               Student|
+| Date                           |                      |
+| GitHub username                |           kevinlu1248|
+| Website (optional)             |                      |

spacy/cli/debug_data.py

@@ -187,12 +187,17 @@ def debug_data(
         n_missing_vectors = sum(gold_train_data["words_missing_vectors"].values())
         msg.warn(
             "{} words in training data without vectors ({:0.2f}%)".format(
-                n_missing_vectors,
+                n_missing_vectors, n_missing_vectors / gold_train_data["n_words"],
-                n_missing_vectors / gold_train_data["n_words"],
             ),
         )
         msg.text(
-            "10 most common words without vectors: {}".format(_format_labels(gold_train_data["words_missing_vectors"].most_common(10), counts=True)), show=verbose,
+            "10 most common words without vectors: {}".format(
+                _format_labels(
+                    gold_train_data["words_missing_vectors"].most_common(10),
+                    counts=True,
+                )
+            ),
+            show=verbose,
         )
     else:
         msg.info("No word vectors present in the model")

spacy/cli/init_model.py

@@ -18,6 +18,8 @@ from wasabi import msg
 from ..vectors import Vectors
 from ..errors import Errors, Warnings
 from ..util import ensure_path, get_lang_class, load_model, OOV_RANK
+from ..lookups import Lookups
+
 
 try:
     import ftfy
@@ -49,6 +51,7 @@ DEFAULT_OOV_PROB = -20
         str,
     ),
     model_name=("Optional name for the model meta", "option", "mn", str),
+    omit_extra_lookups=("Don't include extra lookups in model", "flag", "OEL", bool),
     base_model=("Base model (for languages with custom tokenizers)", "option", "b", str),
 )
 def init_model(
@@ -62,6 +65,7 @@ def init_model(
     prune_vectors=-1,
     vectors_name=None,
     model_name=None,
+    omit_extra_lookups=False,
     base_model=None,
 ):
     """
@@ -95,6 +99,15 @@ def init_model(
 
     with msg.loading("Creating model..."):
         nlp = create_model(lang, lex_attrs, name=model_name, base_model=base_model)
+
+    # Create empty extra lexeme tables so the data from spacy-lookups-data
+    # isn't loaded if these features are accessed
+    if omit_extra_lookups:
+        nlp.vocab.lookups_extra = Lookups()
+        nlp.vocab.lookups_extra.add_table("lexeme_cluster")
+        nlp.vocab.lookups_extra.add_table("lexeme_prob")
+        nlp.vocab.lookups_extra.add_table("lexeme_settings")
+
     msg.good("Successfully created model")
     if vectors_loc is not None:
         add_vectors(nlp, vectors_loc, truncate_vectors, prune_vectors, vectors_name)

spacy/cli/train.py

@@ -17,6 +17,7 @@ from .._ml import create_default_optimizer
 from ..util import use_gpu as set_gpu
 from ..gold import GoldCorpus
 from ..compat import path2str
+from ..lookups import Lookups
 from .. import util
 from .. import about
 
@@ -57,6 +58,7 @@ from .. import about
     textcat_arch=("Textcat model architecture", "option", "ta", str),
     textcat_positive_label=("Textcat positive label for binary classes with two labels", "option", "tpl", str),
     tag_map_path=("Location of JSON-formatted tag map", "option", "tm", Path),
+    omit_extra_lookups=("Don't include extra lookups in model", "flag", "OEL", bool),
     verbose=("Display more information for debug", "flag", "VV", bool),
     debug=("Run data diagnostics before training", "flag", "D", bool),
     # fmt: on
@@ -96,6 +98,7 @@ def train(
     textcat_arch="bow",
     textcat_positive_label=None,
     tag_map_path=None,
+    omit_extra_lookups=False,
     verbose=False,
     debug=False,
 ):
@@ -247,6 +250,14 @@ def train(
     # Update tag map with provided mapping
     nlp.vocab.morphology.tag_map.update(tag_map)
 
+    # Create empty extra lexeme tables so the data from spacy-lookups-data
+    # isn't loaded if these features are accessed
+    if omit_extra_lookups:
+        nlp.vocab.lookups_extra = Lookups()
+        nlp.vocab.lookups_extra.add_table("lexeme_cluster")
+        nlp.vocab.lookups_extra.add_table("lexeme_prob")
+        nlp.vocab.lookups_extra.add_table("lexeme_settings")
+
     if vectors:
         msg.text("Loading vector from model '{}'".format(vectors))
         _load_vectors(nlp, vectors)

spacy/errors.py

@@ -8,7 +8,7 @@ def add_codes(err_cls):
     class ErrorsWithCodes(err_cls):
         def __getattribute__(self, code):
             msg = super().__getattribute__(code)
-            if code.startswith('__'):  # python system attributes like __class__
+            if code.startswith("__"):  # python system attributes like __class__
                 return msg
             else:
                 return "[{code}] {msg}".format(code=code, msg=msg)
@@ -116,6 +116,7 @@ class Warnings(object):
             " to check the alignment. Misaligned entities ('-') will be "
             "ignored during training.")
 
+
 @add_codes
 class Errors(object):
     E001 = ("No component '{name}' found in pipeline. Available names: {opts}")

spacy/lang/da/__init__.py

@@ -9,7 +9,6 @@ from .morph_rules import MORPH_RULES
 from ..tag_map import TAG_MAP
 
 from ..tokenizer_exceptions import BASE_EXCEPTIONS
-from ..norm_exceptions import BASE_NORMS
 from ...language import Language
 from ...attrs import LANG
 from ...util import update_exc

spacy/lang/de/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -28,7 +28,7 @@ def noun_chunks(obj):
         "og",
         "app",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -38,7 +38,7 @@ def noun_chunks(obj):
     close_app = doc.vocab.strings.add("nk")
 
     rbracket = 0
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if i < rbracket:
             continue
         if word.pos in (NOUN, PROPN, PRON) and word.dep in np_deps:

spacy/lang/el/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases. Works on both Doc and Span.
     """
@@ -14,7 +14,7 @@ def noun_chunks(obj):
     # obj tag corrects some DEP tagger mistakes.
     # Further improvement of the models will eliminate the need for this tag.
     labels = ["nsubj", "obj", "iobj", "appos", "ROOT", "obl"]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -24,7 +24,7 @@ def noun_chunks(obj):
     nmod = doc.vocab.strings.add("nmod")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/en/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -20,7 +20,7 @@ def noun_chunks(obj):
         "attr",
         "ROOT",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -29,7 +29,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/en/tokenizer_exceptions.py

@@ -197,7 +197,7 @@ for word in ["who", "what", "when", "where", "why", "how", "there", "that"]:
 
         _exc[orth + "d"] = [
             {ORTH: orth, LEMMA: word, NORM: word},
-            {ORTH: "d", NORM: "'d"}
+            {ORTH: "d", NORM: "'d"},
         ]
 
         _exc[orth + "'d've"] = [

spacy/lang/es/punctuation.py

@@ -5,7 +5,6 @@ from ..char_classes import LIST_PUNCT, LIST_ELLIPSES, LIST_QUOTES
 from ..char_classes import LIST_ICONS, CURRENCY, LIST_UNITS, PUNCT
 from ..char_classes import CONCAT_QUOTES, ALPHA_LOWER, ALPHA_UPPER, ALPHA
 from ..char_classes import merge_chars
-from ..punctuation import TOKENIZER_PREFIXES as BASE_TOKENIZER_PREFIXES
 
 
 _list_units = [u for u in LIST_UNITS if u != "%"]

spacy/lang/es/syntax_iterators.py

@@ -5,8 +5,8 @@ from ...symbols import NOUN, PROPN, PRON, VERB, AUX
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
-    doc = obj.doc
+    doc = doclike.doc
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -21,7 +21,7 @@ def noun_chunks(obj):
     np_right_deps = [doc.vocab.strings.add(label) for label in right_labels]
     stop_deps = [doc.vocab.strings.add(label) for label in stop_labels]
     token = doc[0]
-    while token and token.i < len(doc):
+    while token and token.i < len(doclike):
         if token.pos in [PROPN, NOUN, PRON]:
             left, right = noun_bounds(
                 doc, token, np_left_deps, np_right_deps, stop_deps

spacy/lang/fa/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -20,7 +20,7 @@ def noun_chunks(obj):
         "attr",
         "ROOT",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -29,7 +29,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/fr/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -19,7 +19,7 @@ def noun_chunks(obj):
         "nmod",
         "nmod:poss",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -28,7 +28,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/hy/__init__.py

@@ -1,11 +1,12 @@
+# coding: utf8
+from __future__ import unicode_literals
+
 from .stop_words import STOP_WORDS
 from .lex_attrs import LEX_ATTRS
 from .tag_map import TAG_MAP
 
-
 from ...attrs import LANG
 from ...language import Language
-from ...tokens import Doc
 
 
 class ArmenianDefaults(Language.Defaults):

spacy/lang/hy/examples.py

@@ -1,6 +1,6 @@
+# coding: utf8
 from __future__ import unicode_literals
 
-
 """
 Example sentences to test spaCy and its language models.
 >>> from spacy.lang.hy.examples import sentences

spacy/lang/hy/lex_attrs.py

@@ -1,3 +1,4 @@
+# coding: utf8
 from __future__ import unicode_literals
 
 from ...attrs import LIKE_NUM

spacy/lang/hy/stop_words.py

@@ -1,6 +1,6 @@
+# coding: utf8
 from __future__ import unicode_literals
 
-
 STOP_WORDS = set(
     """
 նա

spacy/lang/hy/tag_map.py

@@ -1,7 +1,7 @@
 # coding: utf8
 from __future__ import unicode_literals
 
-from ...symbols import POS, SYM, ADJ, NUM, DET, ADV, ADP, X, VERB, NOUN
+from ...symbols import POS, ADJ, NUM, DET, ADV, ADP, X, VERB, NOUN
 from ...symbols import PROPN, PART, INTJ, PRON, SCONJ, AUX, CCONJ
 
 TAG_MAP = {
@@ -716,7 +716,7 @@ TAG_MAP = {
         POS: NOUN,
         "Animacy": "Nhum",
         "Case": "Dat",
-        "Number": "Coll",
+        # "Number": "Coll",
         "Number": "Sing",
         "Person": "1",
     },
@@ -815,7 +815,7 @@ TAG_MAP = {
         "Animacy": "Nhum",
         "Case": "Nom",
         "Definite": "Def",
-        "Number": "Plur",
+        # "Number": "Plur",
         "Number": "Sing",
         "Poss": "Yes",
     },
@@ -880,7 +880,7 @@ TAG_MAP = {
         POS: NOUN,
         "Animacy": "Nhum",
         "Case": "Nom",
-        "Number": "Plur",
+        # "Number": "Plur",
         "Number": "Sing",
         "Person": "2",
     },
@@ -1223,9 +1223,9 @@ TAG_MAP = {
     "PRON_Case=Nom|Number=Sing|Number=Plur|Person=3|Person=1|PronType=Emp": {
         POS: PRON,
         "Case": "Nom",
-        "Number": "Sing",
+        # "Number": "Sing",
         "Number": "Plur",
-        "Person": "3",
+        # "Person": "3",
         "Person": "1",
         "PronType": "Emp",
     },

spacy/lang/id/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -19,7 +19,7 @@ def noun_chunks(obj):
         "nmod",
         "nmod:poss",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -28,7 +28,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/ml/lex_attrs.py

@@ -55,7 +55,7 @@ _num_words = [
     "തൊണ്ണൂറ് ",
     "നുറ് ",
     "ആയിരം ",
-    "പത്തുലക്ഷം"
+    "പത്തുലക്ഷം",
 ]
 
 

spacy/lang/ml/stop_words.py

@@ -3,7 +3,6 @@ from __future__ import unicode_literals
 
 
 STOP_WORDS = set(
-
     """
 അത്
 ഇത്

spacy/lang/nb/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -19,7 +19,7 @@ def noun_chunks(obj):
         "nmod",
         "nmod:poss",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -28,7 +28,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/pl/__init__.py

@@ -12,7 +12,7 @@ from ..tokenizer_exceptions import BASE_EXCEPTIONS
 from ..norm_exceptions import BASE_NORMS
 from ...language import Language
 from ...attrs import LANG, NORM
-from ...util import update_exc, add_lookups
+from ...util import add_lookups
 from ...lookups import Lookups
 
 

spacy/lang/pl/lemmatizer.py

@@ -3,7 +3,6 @@ from __future__ import unicode_literals
 
 from ...lemmatizer import Lemmatizer
 from ...parts_of_speech import NAMES
-from ...errors import Errors
 
 
 class PolishLemmatizer(Lemmatizer):

spacy/lang/pl/punctuation.py

@@ -8,7 +8,9 @@ from ..punctuation import TOKENIZER_PREFIXES as BASE_TOKENIZER_PREFIXES
 
 _quotes = CONCAT_QUOTES.replace("'", "")
 
-_prefixes = _prefixes = [r"(długo|krótko|jedno|dwu|trzy|cztero)-"] + BASE_TOKENIZER_PREFIXES
+_prefixes = _prefixes = [
+    r"(długo|krótko|jedno|dwu|trzy|cztero)-"
+] + BASE_TOKENIZER_PREFIXES
 
 _infixes = (
     LIST_ELLIPSES

spacy/lang/sv/lex_attrs.py

@@ -40,7 +40,7 @@ _num_words = [
     "miljard",
     "biljon",
     "biljard",
-    "kvadriljon"
+    "kvadriljon",
 ]
 
 

spacy/lang/sv/syntax_iterators.py

@@ -5,7 +5,7 @@ from ...symbols import NOUN, PROPN, PRON
 from ...errors import Errors
 
 
-def noun_chunks(obj):
+def noun_chunks(doclike):
     """
     Detect base noun phrases from a dependency parse. Works on both Doc and Span.
     """
@@ -20,7 +20,7 @@ def noun_chunks(obj):
         "nmod",
         "nmod:poss",
     ]
-    doc = obj.doc  # Ensure works on both Doc and Span.
+    doc = doclike.doc  # Ensure works on both Doc and Span.
 
     if not doc.is_parsed:
         raise ValueError(Errors.E029)
@@ -29,7 +29,7 @@ def noun_chunks(obj):
     conj = doc.vocab.strings.add("conj")
     np_label = doc.vocab.strings.add("NP")
     prev_end = -1
-    for i, word in enumerate(obj):
+    for i, word in enumerate(doclike):
         if word.pos not in (NOUN, PROPN, PRON):
             continue
         # Prevent nested chunks from being produced

spacy/lang/ur/tag_map.py

@@ -38,7 +38,6 @@ TAG_MAP = {
     "NNPC": {POS: PROPN},
     "NNC": {POS: NOUN},
     "PSP": {POS: ADP},
-
     ".": {POS: PUNCT},
     ",": {POS: PUNCT},
     "-LRB-": {POS: PUNCT},

spacy/lang/zh/__init__.py

@@ -109,6 +109,7 @@ class ChineseTokenizer(DummyTokenizer):
             if reset:
                 try:
                     import pkuseg
+
                     self.pkuseg_seg.preprocesser = pkuseg.Preprocesser(None)
                 except ImportError:
                     if self.use_pkuseg:
@@ -118,7 +119,7 @@ class ChineseTokenizer(DummyTokenizer):
                         )
                         raise ImportError(msg)
             for word in words:
-                self.pkuseg_seg.preprocesser.insert(word.strip(), '')
+                self.pkuseg_seg.preprocesser.insert(word.strip(), "")
 
     def _get_config(self):
         config = OrderedDict(
@@ -168,21 +169,16 @@ class ChineseTokenizer(DummyTokenizer):
         return util.to_bytes(serializers, [])
 
     def from_bytes(self, data, **kwargs):
-        pkuseg_features_b = b""
+        pkuseg_data = {"features_b": b"", "weights_b": b"", "processors_data": None}
-        pkuseg_weights_b = b""
-        pkuseg_processors_data = None
 
         def deserialize_pkuseg_features(b):
-            nonlocal pkuseg_features_b
+            pkuseg_data["features_b"] = b
-            pkuseg_features_b = b
 
         def deserialize_pkuseg_weights(b):
-            nonlocal pkuseg_weights_b
+            pkuseg_data["weights_b"] = b
-            pkuseg_weights_b = b
 
         def deserialize_pkuseg_processors(b):
-            nonlocal pkuseg_processors_data
+            pkuseg_data["processors_data"] = srsly.msgpack_loads(b)
-            pkuseg_processors_data = srsly.msgpack_loads(b)
 
         deserializers = OrderedDict(
             (
@@ -194,13 +190,13 @@ class ChineseTokenizer(DummyTokenizer):
         )
         util.from_bytes(data, deserializers, [])
 
-        if pkuseg_features_b and pkuseg_weights_b:
+        if pkuseg_data["features_b"] and pkuseg_data["weights_b"]:
             with tempfile.TemporaryDirectory() as tempdir:
                 tempdir = Path(tempdir)
                 with open(tempdir / "features.pkl", "wb") as fileh:
-                    fileh.write(pkuseg_features_b)
+                    fileh.write(pkuseg_data["features_b"])
                 with open(tempdir / "weights.npz", "wb") as fileh:
-                    fileh.write(pkuseg_weights_b)
+                    fileh.write(pkuseg_data["weights_b"])
                 try:
                     import pkuseg
                 except ImportError:
@@ -209,13 +205,9 @@ class ChineseTokenizer(DummyTokenizer):
                         + _PKUSEG_INSTALL_MSG
                     )
                 self.pkuseg_seg = pkuseg.pkuseg(str(tempdir))
-            if pkuseg_processors_data:
+            if pkuseg_data["processors_data"]:
-                (
+                processors_data = pkuseg_data["processors_data"]
-                    user_dict,
+                (user_dict, do_process, common_words, other_words) = processors_data
-                    do_process,
-                    common_words,
-                    other_words,
-                ) = pkuseg_processors_data
                 self.pkuseg_seg.preprocesser = pkuseg.Preprocesser(user_dict)
                 self.pkuseg_seg.postprocesser.do_process = do_process
                 self.pkuseg_seg.postprocesser.common_words = set(common_words)

spacy/language.py

@@ -79,7 +79,9 @@ class BaseDefaults(object):
             lookups=lookups,
         )
         vocab.lex_attr_getters[NORM] = util.add_lookups(
-            vocab.lex_attr_getters.get(NORM, LEX_ATTRS[NORM]), BASE_NORMS, vocab.lookups.get_table("lexeme_norm")
+            vocab.lex_attr_getters.get(NORM, LEX_ATTRS[NORM]),
+            BASE_NORMS,
+            vocab.lookups.get_table("lexeme_norm"),
         )
         for tag_str, exc in cls.morph_rules.items():
             for orth_str, attrs in exc.items():
@@ -974,7 +976,9 @@ class Language(object):
         serializers = OrderedDict()
         serializers["vocab"] = lambda: self.vocab.to_bytes()
         serializers["tokenizer"] = lambda: self.tokenizer.to_bytes(exclude=["vocab"])
-        serializers["meta.json"] = lambda: srsly.json_dumps(OrderedDict(sorted(self.meta.items())))
+        serializers["meta.json"] = lambda: srsly.json_dumps(
+            OrderedDict(sorted(self.meta.items()))
+        )
         for name, proc in self.pipeline:
             if name in exclude:
                 continue

spacy/lemmatizer.py

@@ -6,6 +6,7 @@ from collections import OrderedDict
 from .symbols import NOUN, VERB, ADJ, PUNCT, PROPN
 from .errors import Errors
 from .lookups import Lookups
+from .parts_of_speech import NAMES as UPOS_NAMES
 
 
 class Lemmatizer(object):
@@ -43,17 +44,11 @@ class Lemmatizer(object):
         lookup_table = self.lookups.get_table("lemma_lookup", {})
         if "lemma_rules" not in self.lookups:
             return [lookup_table.get(string, string)]
-        if univ_pos in (NOUN, "NOUN", "noun"):
+        if isinstance(univ_pos, int):
-            univ_pos = "noun"
+            univ_pos = UPOS_NAMES.get(univ_pos, "X")
-        elif univ_pos in (VERB, "VERB", "verb"):
+        univ_pos = univ_pos.lower()
-            univ_pos = "verb"
+
-        elif univ_pos in (ADJ, "ADJ", "adj"):
+        if univ_pos in ("", "eol", "space"):
-            univ_pos = "adj"
-        elif univ_pos in (PUNCT, "PUNCT", "punct"):
-            univ_pos = "punct"
-        elif univ_pos in (PROPN, "PROPN"):
-            return [string]
-        else:
             return [string.lower()]
         # See Issue #435 for example of where this logic is requied.
         if self.is_base_form(univ_pos, morphology):
@@ -61,6 +56,11 @@ class Lemmatizer(object):
         index_table = self.lookups.get_table("lemma_index", {})
         exc_table = self.lookups.get_table("lemma_exc", {})
         rules_table = self.lookups.get_table("lemma_rules", {})
+        if not any((index_table.get(univ_pos), exc_table.get(univ_pos), rules_table.get(univ_pos))):
+            if univ_pos == "propn":
+                return [string]
+            else:
+                return [string.lower()]
         lemmas = self.lemmatize(
             string,
             index_table.get(univ_pos, {}),

spacy/matcher/matcher.pyx

@@ -213,28 +213,28 @@ cdef class Matcher:
                 else:
                     yield doc
 
-    def __call__(self, object doc_or_span):
+    def __call__(self, object doclike):
         """Find all token sequences matching the supplied pattern.
 
-        doc_or_span (Doc or Span): The document to match over.
+        doclike (Doc or Span): The document to match over.
         RETURNS (list): A list of `(key, start, end)` tuples,
             describing the matches. A match tuple describes a span
             `doc[start:end]`. The `label_id` and `key` are both integers.
         """
-        if isinstance(doc_or_span, Doc):
+        if isinstance(doclike, Doc):
-            doc = doc_or_span
+            doc = doclike
             length = len(doc)
-        elif isinstance(doc_or_span, Span):
+        elif isinstance(doclike, Span):
-            doc = doc_or_span.doc
+            doc = doclike.doc
-            length = doc_or_span.end - doc_or_span.start
+            length = doclike.end - doclike.start
         else:
-            raise ValueError(Errors.E195.format(good="Doc or Span", got=type(doc_or_span).__name__))
+            raise ValueError(Errors.E195.format(good="Doc or Span", got=type(doclike).__name__))
         if len(set([LEMMA, POS, TAG]) & self._seen_attrs) > 0 \
           and not doc.is_tagged:
             raise ValueError(Errors.E155.format())
         if DEP in self._seen_attrs and not doc.is_parsed:
             raise ValueError(Errors.E156.format())
-        matches = find_matches(&self.patterns[0], self.patterns.size(), doc_or_span, length, 
+        matches = find_matches(&self.patterns[0], self.patterns.size(), doclike, length,
                                 extensions=self._extensions, predicates=self._extra_predicates)
         for i, (key, start, end) in enumerate(matches):
             on_match = self._callbacks.get(key, None)
@@ -257,7 +257,7 @@ def unpickle_matcher(vocab, patterns, callbacks):
     return matcher
 
 
-cdef find_matches(TokenPatternC** patterns, int n, object doc_or_span, int length, extensions=None, predicates=tuple()):
+cdef find_matches(TokenPatternC** patterns, int n, object doclike, int length, extensions=None, predicates=tuple()):
     """Find matches in a doc, with a compiled array of patterns. Matches are
     returned as a list of (id, start, end) tuples.
 
@@ -286,7 +286,7 @@ cdef find_matches(TokenPatternC** patterns, int n, object doc_or_span, int lengt
     else:
         nr_extra_attr = 0
         extra_attr_values = <attr_t*>mem.alloc(length, sizeof(attr_t))
-    for i, token in enumerate(doc_or_span):
+    for i, token in enumerate(doclike):
         for name, index in extensions.items():
             value = token._.get(name)
             if isinstance(value, basestring):
@@ -298,7 +298,7 @@ cdef find_matches(TokenPatternC** patterns, int n, object doc_or_span, int lengt
         for j in range(n):
             states.push_back(PatternStateC(patterns[j], i, 0))
         transition_states(states, matches, predicate_cache,
-            doc_or_span[i], extra_attr_values, predicates)
+            doclike[i], extra_attr_values, predicates)
         extra_attr_values += nr_extra_attr
         predicate_cache += len(predicates)
     # Handle matches that end in 0-width patterns

spacy/tests/conftest.py

@@ -112,6 +112,7 @@ def ga_tokenizer():
 def gu_tokenizer():
     return get_lang_class("gu").Defaults.create_tokenizer()
 
+
 @pytest.fixture(scope="session")
 def he_tokenizer():
     return get_lang_class("he").Defaults.create_tokenizer()
@@ -246,7 +247,9 @@ def yo_tokenizer():
 
 @pytest.fixture(scope="session")
 def zh_tokenizer_char():
-    return get_lang_class("zh").Defaults.create_tokenizer(config={"use_jieba": False, "use_pkuseg": False})
+    return get_lang_class("zh").Defaults.create_tokenizer(
+        config={"use_jieba": False, "use_pkuseg": False}
+    )
 
 
 @pytest.fixture(scope="session")
@@ -258,7 +261,9 @@ def zh_tokenizer_jieba():
 @pytest.fixture(scope="session")
 def zh_tokenizer_pkuseg():
     pytest.importorskip("pkuseg")
-    return get_lang_class("zh").Defaults.create_tokenizer(config={"pkuseg_model": "default", "use_jieba": False, "use_pkuseg": True})
+    return get_lang_class("zh").Defaults.create_tokenizer(
+        config={"pkuseg_model": "default", "use_jieba": False, "use_pkuseg": True}
+    )
 
 
 @pytest.fixture(scope="session")

spacy/tests/doc/test_creation.py

@@ -50,7 +50,9 @@ def test_create_from_words_and_text(vocab):
     assert [t.text for t in doc] == ["  ", "'", "dogs", "'", "\n\n", "run", " "]
     assert [t.whitespace_ for t in doc] == ["", "", "", "", "", " ", ""]
     assert doc.text == text
-    assert [t.text for t in doc if not t.text.isspace()] == [word for word in words if not word.isspace()]
+    assert [t.text for t in doc if not t.text.isspace()] == [
+        word for word in words if not word.isspace()
+    ]
 
     # partial whitespace in words
     words = ["  ", "'", "dogs", "'", "\n\n", "run", " "]
@@ -60,7 +62,9 @@ def test_create_from_words_and_text(vocab):
     assert [t.text for t in doc] == ["  ", "'", "dogs", "'", "\n\n", "run", " "]
     assert [t.whitespace_ for t in doc] == ["", "", "", "", "", " ", ""]
     assert doc.text == text
-    assert [t.text for t in doc if not t.text.isspace()] == [word for word in words if not word.isspace()]
+    assert [t.text for t in doc if not t.text.isspace()] == [
+        word for word in words if not word.isspace()
+    ]
 
     # non-standard whitespace tokens
     words = [" ", " ", "'", "dogs", "'", "\n\n", "run"]
@@ -70,7 +74,9 @@ def test_create_from_words_and_text(vocab):
     assert [t.text for t in doc] == ["  ", "'", "dogs", "'", "\n\n", "run", " "]
     assert [t.whitespace_ for t in doc] == ["", "", "", "", "", " ", ""]
     assert doc.text == text
-    assert [t.text for t in doc if not t.text.isspace()] == [word for word in words if not word.isspace()]
+    assert [t.text for t in doc if not t.text.isspace()] == [
+        word for word in words if not word.isspace()
+    ]
 
     # mismatch between words and text
     with pytest.raises(ValueError):

spacy/tests/doc/test_token_api.py

@@ -181,6 +181,7 @@ def test_is_sent_start(en_tokenizer):
     doc.is_parsed = True
     assert len(list(doc.sents)) == 2
 
+
 def test_is_sent_end(en_tokenizer):
     doc = en_tokenizer("This is a sentence. This is another.")
     assert doc[4].is_sent_end is None
@@ -213,6 +214,7 @@ def test_token0_has_sent_start_true():
     assert doc[1].is_sent_start is None
     assert not doc.is_sentenced
 
+
 def test_tokenlast_has_sent_end_true():
     doc = Doc(Vocab(), words=["hello", "world"])
     assert doc[0].is_sent_end is None

spacy/tests/lang/gu/test_text.py

@@ -3,17 +3,16 @@ from __future__ import unicode_literals
 
 import pytest
 
+
 def test_gu_tokenizer_handlers_long_text(gu_tokenizer):
     text = """પશ્ચિમ ભારતમાં આવેલું ગુજરાત રાજ્ય જે વ્યક્તિઓની માતૃભૂમિ છે"""
     tokens = gu_tokenizer(text)
     assert len(tokens) == 9
 
+
 @pytest.mark.parametrize(
     "text,length",
-    [
+    [("ગુજરાતીઓ ખાવાના શોખીન માનવામાં આવે છે", 6), ("ખેતરની ખેડ કરવામાં આવે છે.", 5)],
-        ("ગુજરાતીઓ ખાવાના શોખીન માનવામાં આવે છે", 6),
-        ("ખેતરની ખેડ કરવામાં આવે છે.", 5),
-    ],
 )
 def test_gu_tokenizer_handles_cnts(gu_tokenizer, text, length):
     tokens = gu_tokenizer(text)

spacy/tests/lang/hy/test_text.py

@@ -1,3 +1,4 @@
+# coding: utf8
 from __future__ import unicode_literals
 
 import pytest

spacy/tests/lang/hy/test_tokenizer.py

@@ -1,3 +1,4 @@
+# coding: utf8
 from __future__ import unicode_literals
 
 import pytest

spacy/tests/lang/ml/test_text.py

@@ -10,7 +10,16 @@ def test_ml_tokenizer_handles_long_text(ml_tokenizer):
     assert len(tokens) == 5
 
 
-@pytest.mark.parametrize("text,length", [("എന്നാൽ അച്ചടിയുടെ ആവിർഭാവം ലിപിയിൽ കാര്യമായ മാറ്റങ്ങൾ വരുത്തിയത് കൂട്ടക്ഷരങ്ങളെ അണുഅക്ഷരങ്ങളായി പിരിച്ചുകൊണ്ടായിരുന്നു", 10), ("പരമ്പരാഗതമായി മലയാളം ഇടത്തുനിന്ന് വലത്തോട്ടാണ് എഴുതുന്നത്", 5)])
+@pytest.mark.parametrize(
+    "text,length",
+    [
+        (
+            "എന്നാൽ അച്ചടിയുടെ ആവിർഭാവം ലിപിയിൽ കാര്യമായ മാറ്റങ്ങൾ വരുത്തിയത് കൂട്ടക്ഷരങ്ങളെ അണുഅക്ഷരങ്ങളായി പിരിച്ചുകൊണ്ടായിരുന്നു",
+            10,
+        ),
+        ("പരമ്പരാഗതമായി മലയാളം ഇടത്തുനിന്ന് വലത്തോട്ടാണ് എഴുതുന്നത്", 5),
+    ],
+)
 def test_ml_tokenizer_handles_cnts(ml_tokenizer, text, length):
     tokens = ml_tokenizer(text)
     assert len(tokens) == length

spacy/tests/lang/zh/test_serialize.py

@@ -34,5 +34,15 @@ def test_zh_tokenizer_serialize_pkuseg(zh_tokenizer_pkuseg):
 
 @pytest.mark.slow
 def test_zh_tokenizer_serialize_pkuseg_with_processors(zh_tokenizer_pkuseg):
-    nlp = Chinese(meta={"tokenizer": {"config": {"use_jieba": False, "use_pkuseg": True, "pkuseg_model": "medicine"}}})
+    nlp = Chinese(
+        meta={
+            "tokenizer": {
+                "config": {
+                    "use_jieba": False,
+                    "use_pkuseg": True,
+                    "pkuseg_model": "medicine",
+                }
+            }
+        }
+    )
     zh_tokenizer_serialize(nlp.tokenizer)

spacy/tests/lang/zh/test_tokenizer.py

@@ -43,12 +43,16 @@ def test_zh_tokenizer_pkuseg(zh_tokenizer_pkuseg, text, expected_tokens):
 def test_zh_tokenizer_pkuseg_user_dict(zh_tokenizer_pkuseg):
     user_dict = _get_pkuseg_trie_data(zh_tokenizer_pkuseg.pkuseg_seg.preprocesser.trie)
     zh_tokenizer_pkuseg.pkuseg_update_user_dict(["nonsense_asdf"])
-    updated_user_dict = _get_pkuseg_trie_data(zh_tokenizer_pkuseg.pkuseg_seg.preprocesser.trie)
+    updated_user_dict = _get_pkuseg_trie_data(
+        zh_tokenizer_pkuseg.pkuseg_seg.preprocesser.trie
+    )
     assert len(user_dict) == len(updated_user_dict) - 1
 
     # reset user dict
     zh_tokenizer_pkuseg.pkuseg_update_user_dict([], reset=True)
-    reset_user_dict = _get_pkuseg_trie_data(zh_tokenizer_pkuseg.pkuseg_seg.preprocesser.trie)
+    reset_user_dict = _get_pkuseg_trie_data(
+        zh_tokenizer_pkuseg.pkuseg_seg.preprocesser.trie
+    )
     assert len(reset_user_dict) == 0
 
 

spacy/tests/matcher/test_matcher_api.py

@@ -272,8 +272,8 @@ def test_matcher_regex_shape(en_vocab):
         (">=", ["a"]),
         ("<=", ["aaa"]),
         (">", ["a", "aa"]),
-        ("<", ["aa", "aaa"])
+        ("<", ["aa", "aaa"]),
-    ]
+    ],
 )
 def test_matcher_compare_length(en_vocab, cmp, bad):
     matcher = Matcher(en_vocab)

spacy/tests/pipeline/test_sentencizer.py

@@ -106,7 +106,9 @@ def test_sentencizer_complex(en_vocab, words, sent_starts, sent_ends, n_sents):
         ),
     ],
 )
-def test_sentencizer_custom_punct(en_vocab, punct_chars, words, sent_starts, sent_ends, n_sents):
+def test_sentencizer_custom_punct(
+    en_vocab, punct_chars, words, sent_starts, sent_ends, n_sents
+):
     doc = Doc(en_vocab, words=words)
     sentencizer = Sentencizer(punct_chars=punct_chars)
     doc = sentencizer(doc)

spacy/tests/serialize/test_serialize_vocab_strings.py

@@ -56,9 +56,13 @@ def test_serialize_vocab_roundtrip_disk(strings1, strings2):
         assert strings1 == [s for s in vocab1_d.strings if s != "_SP"]
         assert strings2 == [s for s in vocab2_d.strings if s != "_SP"]
         if strings1 == strings2:
-            assert [s for s in vocab1_d.strings if s != "_SP"] == [s for s in vocab2_d.strings if s != "_SP"]
+            assert [s for s in vocab1_d.strings if s != "_SP"] == [
+                s for s in vocab2_d.strings if s != "_SP"
+            ]
         else:
-            assert [s for s in vocab1_d.strings if s != "_SP"] != [s for s in vocab2_d.strings if s != "_SP"]
+            assert [s for s in vocab1_d.strings if s != "_SP"] != [
+                s for s in vocab2_d.strings if s != "_SP"
+            ]
 
 
 @pytest.mark.parametrize("strings,lex_attr", test_strings_attrs)
@@ -76,7 +80,6 @@ def test_serialize_vocab_lex_attrs_bytes(strings, lex_attr):
 def test_deserialize_vocab_seen_entries(strings, lex_attr):
     # Reported in #2153
     vocab = Vocab(strings=strings)
-    length = len(vocab)
     vocab.from_bytes(vocab.to_bytes())
     assert len(vocab.strings) == len(strings) + 1  # adds _SP
 
@@ -130,6 +133,7 @@ def test_serialize_stringstore_roundtrip_disk(strings1, strings2):
         else:
             assert list(sstore1_d) != list(sstore2_d)
 
+
 @pytest.mark.parametrize("strings,lex_attr", test_strings_attrs)
 def test_pickle_vocab(strings, lex_attr):
     vocab = Vocab(strings=strings)

spacy/tests/test_gold.py

@@ -112,7 +112,7 @@ def test_gold_biluo_different_tokenization(en_vocab, en_tokenizer):
     data = (
         "I'll return the ₹54 amount",
         {
-            "words": ["I", "'ll", "return", "the", "₹", "54", "amount",],
+            "words": ["I", "'ll", "return", "the", "₹", "54", "amount"],
             "entities": [(16, 19, "MONEY")],
         },
     )
@@ -122,7 +122,7 @@ def test_gold_biluo_different_tokenization(en_vocab, en_tokenizer):
     data = (
         "I'll return the $54 amount",
         {
-            "words": ["I", "'ll", "return", "the", "$", "54", "amount",],
+            "words": ["I", "'ll", "return", "the", "$", "54", "amount"],
             "entities": [(16, 19, "MONEY")],
         },
     )

spacy/tests/vocab_vectors/test_vectors.py

@@ -366,6 +366,7 @@ def test_vectors_serialize():
         assert row == row_r
         assert_equal(v.data, v_r.data)
 
+
 def test_vector_is_oov():
     vocab = Vocab(vectors_name="test_vocab_is_oov")
     data = numpy.ndarray((5, 3), dtype="f")

spacy/util.py

@@ -774,7 +774,7 @@ def get_words_and_spaces(words, text):
         except ValueError:
             raise ValueError(Errors.E194.format(text=text, words=words))
         if word_start > 0:
-            text_words.append(text[text_pos:text_pos+word_start])
+            text_words.append(text[text_pos : text_pos + word_start])
             text_spaces.append(False)
             text_pos += word_start
         text_words.append(word)

website/meta/universe.json

@@ -2172,6 +2172,43 @@
                 "model_uri = f'runs:/{my_run_id}/model'",
                 "nlp2 = mlflow.spacy.load_model(model_uri=model_uri)"
             ]
+        },
+        {
+            "id": "pyate",
+            "title": "PyATE",
+            "slogan": "Python Automated Term Extraction",
+            "description": "PyATE is a term extraction library written in Python using Spacy POS tagging with Basic, Combo Basic, C-Value, TermExtractor, and Weirdness.",
+            "github": "kevinlu1248/pyate",
+            "pip": "pyate",
+            "code_example": [
+                "import spacy",
+		"from pyate.term_extraction_pipeline import TermExtractionPipeline",
+		"",
+		"nlp = spacy.load('en_core_web_sm')",
+		"nlp.add_pipe(TermExtractionPipeline())",
+		"# source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1994795/",
+		"string = 'Central to the development of cancer are genetic changes that endow these “cancer cells” with many of the hallmarks of cancer, such as self-sufficient growth and resistance to anti-growth and pro-death signals. However, while the genetic changes that occur within cancer cells themselves, such as activated oncogenes or dysfunctional tumor suppressors, are responsible for many aspects of cancer development, they are not sufficient. Tumor promotion and progression are dependent on ancillary processes provided by cells of the tumor environment but that are not necessarily cancerous themselves. Inflammation has long been associated with the development of cancer. This review will discuss the reflexive relationship between cancer and inflammation with particular focus on how considering the role of inflammation in physiologic processes such as the maintenance of tissue homeostasis and repair may provide a logical framework for understanding the connection between the inflammatory response and cancer.'",
+		"",
+		"doc = nlp(string)",
+		"print(doc._.combo_basic.sort_values(ascending=False).head(5))",
+		"\"\"\"\"\"\"",
+		"dysfunctional tumor                1.443147",
+		"tumor suppressors                  1.443147",
+		"genetic changes                    1.386294",
+		"cancer cells                       1.386294",
+		"dysfunctional tumor suppressors    1.298612",
+		"\"\"\"\"\"\""
+            ],
+            "code_language": "python",
+            "url": "https://github.com/kevinlu1248/pyate",
+            "author": "Kevin Lu",
+            "author_links": {
+                "twitter": "kevinlu1248",
+                "github": "kevinlu1248",
+                "website": "https://github.com/kevinlu1248/pyate"
+            },
+            "category": ["pipeline", "research"],
+            "tags": ["term_extraction"]
         }
     ],