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Add training option to set annotations on update (#7767)
* Add training option to set annotations on update Add a `[training]` option called `set_annotations_on_update` to specify a list of components for which the predicted annotations should be set on `example.predicted` immediately after that component has been updated. The predicted annotations can be accessed by later components in the pipeline during the processing of the batch in the same `update` call. * Rename to annotates / annotating_components * Add test for `annotating_components` when training from config * Add documentation
This commit is contained in:
Adriane Boyd
GitHub
parent
c105ed10fd
commit
95c0833656
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@ -80,6 +80,8 @@ eval_frequency = 200
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score_weights = {}
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# Names of pipeline components that shouldn't be updated during training
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frozen_components = []
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# Names of pipeline components that should set annotations during training
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annotating_components = []
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# Location in the config where the dev corpus is defined
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dev_corpus = "corpora.dev"
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# Location in the config where the train corpus is defined
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@ -1074,6 +1074,7 @@ class Language:
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losses: Optional[Dict[str, float]] = None,
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component_cfg: Optional[Dict[str, Dict[str, Any]]] = None,
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exclude: Iterable[str] = SimpleFrozenList(),
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annotates: Iterable[str] = SimpleFrozenList(),
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):
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"""Update the models in the pipeline.
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@ -1081,10 +1082,13 @@ class Language:
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_: Should not be set - serves to catch backwards-incompatible scripts.
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drop (float): The dropout rate.
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sgd (Optimizer): An optimizer.
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losses (Dict[str, float]): Dictionary to update with the loss, keyed by component.
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losses (Dict[str, float]): Dictionary to update with the loss, keyed by
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component.
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component_cfg (Dict[str, Dict]): Config parameters for specific pipeline
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components, keyed by component name.
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exclude (Iterable[str]): Names of components that shouldn't be updated.
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annotates (Iterable[str]): Names of components that should set
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annotations on the predicted examples after updating.
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RETURNS (Dict[str, float]): The updated losses dictionary
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DOCS: https://spacy.io/api/language#update
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@ -1103,15 +1107,16 @@ class Language:
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sgd = self._optimizer
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if component_cfg is None:
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component_cfg = {}
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pipe_kwargs = {}
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for i, (name, proc) in enumerate(self.pipeline):
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component_cfg.setdefault(name, {})
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pipe_kwargs[name] = deepcopy(component_cfg[name])
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component_cfg[name].setdefault("drop", drop)
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pipe_kwargs[name].setdefault("batch_size", self.batch_size)
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for name, proc in self.pipeline:
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if name in exclude or not hasattr(proc, "update"):
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continue
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proc.update(examples, sgd=None, losses=losses, **component_cfg[name])
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if sgd not in (None, False):
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for name, proc in self.pipeline:
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if name not in exclude and hasattr(proc, "update"):
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proc.update(examples, sgd=None, losses=losses, **component_cfg[name])
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if sgd not in (None, False):
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if (
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name not in exclude
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and hasattr(proc, "is_trainable")
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@ -1119,6 +1124,18 @@ class Language:
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and proc.model not in (True, False, None)
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):
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proc.finish_update(sgd)
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if name in annotates:
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for doc, eg in zip(
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_pipe(
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(eg.predicted for eg in examples),
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proc=proc,
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name=name,
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default_error_handler=self.default_error_handler,
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kwargs=pipe_kwargs[name],
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),
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examples,
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):
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eg.predicted = doc
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return losses
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def rehearse(
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@ -313,6 +313,7 @@ class ConfigSchemaTraining(BaseModel):
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optimizer: Optimizer = Field(..., title="The optimizer to use")
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logger: Logger = Field(..., title="The logger to track training progress")
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frozen_components: List[str] = Field(..., title="Pipeline components that shouldn't be updated during training")
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annotating_components: List[str] = Field(..., title="Pipeline components that should set annotations during training")
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before_to_disk: Optional[Callable[["Language"], "Language"]] = Field(..., title="Optional callback to modify nlp object after training, before it's saved to disk")
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# fmt: on
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113
spacy/tests/pipeline/test_annotates_on_update.py
Normal file
113
spacy/tests/pipeline/test_annotates_on_update.py
Normal file
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@ -0,0 +1,113 @@
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from typing import Callable, Iterable, Iterator
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import pytest
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import io
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from thinc.api import Config
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from spacy.language import Language
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from spacy.training import Example
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from spacy.training.loop import train
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from spacy.lang.en import English
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from spacy.util import registry, load_model_from_config
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@pytest.fixture
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def config_str():
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return """
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[nlp]
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lang = "en"
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pipeline = ["sentencizer","assert_sents"]
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disabled = []
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before_creation = null
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after_creation = null
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after_pipeline_creation = null
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batch_size = 1000
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tokenizer = {"@tokenizers":"spacy.Tokenizer.v1"}
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[components]
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[components.assert_sents]
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factory = "assert_sents"
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[components.sentencizer]
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factory = "sentencizer"
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punct_chars = null
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[training]
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dev_corpus = "corpora.dev"
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train_corpus = "corpora.train"
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annotating_components = ["sentencizer"]
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max_steps = 2
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[corpora]
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[corpora.dev]
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@readers = "unannotated_corpus"
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[corpora.train]
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@readers = "unannotated_corpus"
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"""
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def test_annotates_on_update():
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# The custom component checks for sentence annotation
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@Language.factory("assert_sents", default_config={})
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def assert_sents(nlp, name):
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return AssertSents(name)
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class AssertSents:
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def __init__(self, name, **cfg):
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self.name = name
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pass
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def __call__(self, doc):
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if not doc.has_annotation("SENT_START"):
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raise ValueError("No sents")
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return doc
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def update(self, examples, *, drop=0.0, sgd=None, losses=None):
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for example in examples:
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if not example.predicted.has_annotation("SENT_START"):
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raise ValueError("No sents")
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return {}
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nlp = English()
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nlp.add_pipe("sentencizer")
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nlp.add_pipe("assert_sents")
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# When the pipeline runs, annotations are set
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doc = nlp("This is a sentence.")
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examples = []
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for text in ["a a", "b b", "c c"]:
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examples.append(Example(nlp.make_doc(text), nlp(text)))
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for example in examples:
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assert not example.predicted.has_annotation("SENT_START")
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# If updating without setting annotations, assert_sents will raise an error
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with pytest.raises(ValueError):
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nlp.update(examples)
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# Updating while setting annotations for the sentencizer succeeds
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nlp.update(examples, annotates=["sentencizer"])
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def test_annotating_components_from_config(config_str):
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@registry.readers("unannotated_corpus")
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def create_unannotated_corpus() -> Callable[[Language], Iterable[Example]]:
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return UnannotatedCorpus()
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class UnannotatedCorpus:
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def __call__(self, nlp: Language) -> Iterator[Example]:
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for text in ["a a", "b b", "c c"]:
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doc = nlp.make_doc(text)
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yield Example(doc, doc)
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orig_config = Config().from_str(config_str)
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nlp = load_model_from_config(orig_config, auto_fill=True, validate=True)
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assert nlp.config["training"]["annotating_components"] == ["sentencizer"]
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train(nlp)
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nlp.config["training"]["annotating_components"] = []
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with pytest.raises(ValueError):
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train(nlp)
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@ -1,7 +1,9 @@
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import pytest
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from spacy.language import Language
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from spacy.pipeline import TrainablePipe
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from spacy.training import Example
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from spacy.util import SimpleFrozenList, get_arg_names
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from spacy.lang.en import English
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@pytest.fixture
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@ -417,3 +419,41 @@ def test_pipe_methods_initialize():
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assert "test" in nlp.config["initialize"]["components"]
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nlp.remove_pipe("test")
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assert "test" not in nlp.config["initialize"]["components"]
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def test_update_with_annotates():
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name = "test_with_annotates"
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results = {}
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def make_component(name):
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results[name] = ""
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def component(doc):
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nonlocal results
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results[name] += doc.text
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return doc
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return component
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c1 = Language.component(f"{name}1", func=make_component(f"{name}1"))
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c2 = Language.component(f"{name}2", func=make_component(f"{name}2"))
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components = set([f"{name}1", f"{name}2"])
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nlp = English()
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texts = ["a", "bb", "ccc"]
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examples = []
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for text in texts:
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examples.append(Example(nlp.make_doc(text), nlp.make_doc(text)))
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for components_to_annotate in [[], [f"{name}1"], [f"{name}1", f"{name}2"], [f"{name}2", f"{name}1"]]:
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for key in results:
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results[key] = ""
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nlp = English(vocab=nlp.vocab)
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nlp.add_pipe(f"{name}1")
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nlp.add_pipe(f"{name}2")
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nlp.update(examples, annotates=components_to_annotate)
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for component in components_to_annotate:
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assert results[component] == "".join(eg.predicted.text for eg in examples)
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for component in components - set(components_to_annotate):
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assert results[component] == ""
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@ -74,6 +74,8 @@ def train(
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# Components that shouldn't be updated during training
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frozen_components = T["frozen_components"]
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# Components that should set annotations on update
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annotating_components = T["annotating_components"]
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# Create iterator, which yields out info after each optimization step.
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training_step_iterator = train_while_improving(
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nlp,
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@ -86,11 +88,17 @@ def train(
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max_steps=T["max_steps"],
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eval_frequency=T["eval_frequency"],
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exclude=frozen_components,
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annotating_components=annotating_components,
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)
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clean_output_dir(output_path)
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stdout.write(msg.info(f"Pipeline: {nlp.pipe_names}") + "\n")
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if frozen_components:
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stdout.write(msg.info(f"Frozen components: {frozen_components}") + "\n")
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if annotating_components:
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stdout.write(
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msg.info(f"Set annotations on update for: {annotating_components}")
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+ "\n"
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)
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stdout.write(msg.info(f"Initial learn rate: {optimizer.learn_rate}") + "\n")
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with nlp.select_pipes(disable=frozen_components):
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log_step, finalize_logger = train_logger(nlp, stdout, stderr)
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@ -142,6 +150,7 @@ def train_while_improving(
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patience: int,
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max_steps: int,
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exclude: List[str],
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annotating_components: List[str],
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):
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"""Train until an evaluation stops improving. Works as a generator,
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with each iteration yielding a tuple `(batch, info, is_best_checkpoint)`,
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@ -193,7 +202,12 @@ def train_while_improving(
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dropout = next(dropouts)
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for subbatch in subdivide_batch(batch, accumulate_gradient):
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nlp.update(
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subbatch, drop=dropout, losses=losses, sgd=False, exclude=exclude
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subbatch,
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drop=dropout,
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losses=losses,
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sgd=False,
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exclude=exclude,
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annotates=annotating_components,
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)
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# TODO: refactor this so we don't have to run it separately in here
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for name, proc in nlp.pipeline:
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@ -182,24 +182,25 @@ single corpus once and then divide it up into `train` and `dev` partitions.
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This section defines settings and controls for the training and evaluation
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process that are used when you run [`spacy train`](/api/cli#train).
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| Name | Description |
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| --------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `accumulate_gradient` | Whether to divide the batch up into substeps. Defaults to `1`. ~~int~~ |
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| `batcher` | Callable that takes an iterator of [`Doc`](/api/doc) objects and yields batches of `Doc`s. Defaults to [`batch_by_words`](/api/top-level#batch_by_words). ~~Callable[[Iterator[Doc], Iterator[List[Doc]]]]~~ |
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| `before_to_disk` | Optional callback to modify `nlp` object right before it is saved to disk during and after training. Can be used to remove or reset config values or disable components. Defaults to `null`. ~~Optional[Callable[[Language], Language]]~~ |
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| `dev_corpus` | Dot notation of the config location defining the dev corpus. Defaults to `corpora.dev`. ~~str~~ |
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| `dropout` | The dropout rate. Defaults to `0.1`. ~~float~~ |
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| `eval_frequency` | How often to evaluate during training (steps). Defaults to `200`. ~~int~~ |
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| `frozen_components` | Pipeline component names that are "frozen" and shouldn't be initialized or updated during training. See [here](/usage/training#config-components) for details. Defaults to `[]`. ~~List[str]~~ |
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| `gpu_allocator` | Library for cupy to route GPU memory allocation to. Can be `"pytorch"` or `"tensorflow"`. Defaults to variable `${system.gpu_allocator}`. ~~str~~ |
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| `logger` | Callable that takes the `nlp` and stdout and stderr `IO` objects, sets up the logger, and returns two new callables to log a training step and to finalize the logger. Defaults to [`ConsoleLogger`](/api/top-level#ConsoleLogger). ~~Callable[[Language, IO, IO], [Tuple[Callable[[Dict[str, Any]], None], Callable[[], None]]]]~~ |
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| `max_epochs` | Maximum number of epochs to train for. `0` means an unlimited number of epochs. `-1` means that the train corpus should be streamed rather than loaded into memory with no shuffling within the training loop. Defaults to `0`. ~~int~~ |
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| `max_steps` | Maximum number of update steps to train for. `0` means an unlimited number of steps. Defaults to `20000`. ~~int~~ |
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| `optimizer` | The optimizer. The learning rate schedule and other settings can be configured as part of the optimizer. Defaults to [`Adam`](https://thinc.ai/docs/api-optimizers#adam). ~~Optimizer~~ |
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| `patience` | How many steps to continue without improvement in evaluation score. `0` disables early stopping. Defaults to `1600`. ~~int~~ |
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| `score_weights` | Score names shown in metrics mapped to their weight towards the final weighted score. See [here](/usage/training#metrics) for details. Defaults to `{}`. ~~Dict[str, float]~~ |
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| `seed` | The random seed. Defaults to variable `${system.seed}`. ~~int~~ |
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| `train_corpus` | Dot notation of the config location defining the train corpus. Defaults to `corpora.train`. ~~str~~ |
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| Name | Description |
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| ----------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `accumulate_gradient` | Whether to divide the batch up into substeps. Defaults to `1`. ~~int~~ |
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| `batcher` | Callable that takes an iterator of [`Doc`](/api/doc) objects and yields batches of `Doc`s. Defaults to [`batch_by_words`](/api/top-level#batch_by_words). ~~Callable[[Iterator[Doc], Iterator[List[Doc]]]]~~ |
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| `before_to_disk` | Optional callback to modify `nlp` object right before it is saved to disk during and after training. Can be used to remove or reset config values or disable components. Defaults to `null`. ~~Optional[Callable[[Language], Language]]~~ |
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| `dev_corpus` | Dot notation of the config location defining the dev corpus. Defaults to `corpora.dev`. ~~str~~ |
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| `dropout` | The dropout rate. Defaults to `0.1`. ~~float~~ |
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| `eval_frequency` | How often to evaluate during training (steps). Defaults to `200`. ~~int~~ |
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| `frozen_components` | Pipeline component names that are "frozen" and shouldn't be initialized or updated during training. See [here](/usage/training#config-components) for details. Defaults to `[]`. ~~List[str]~~ |
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| `annotating_components` | Pipeline component names that should set annotations on the predicted docs during training. See [here](/usage/training#annotating-components) for details. Defaults to `[]`. ~~List[str]~~ |
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| `gpu_allocator` | Library for cupy to route GPU memory allocation to. Can be `"pytorch"` or `"tensorflow"`. Defaults to variable `${system.gpu_allocator}`. ~~str~~ |
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| `logger` | Callable that takes the `nlp` and stdout and stderr `IO` objects, sets up the logger, and returns two new callables to log a training step and to finalize the logger. Defaults to [`ConsoleLogger`](/api/top-level#ConsoleLogger). ~~Callable[[Language, IO, IO], [Tuple[Callable[[Dict[str, Any]], None], Callable[[], None]]]]~~ |
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| `max_epochs` | Maximum number of epochs to train for. `0` means an unlimited number of epochs. `-1` means that the train corpus should be streamed rather than loaded into memory with no shuffling within the training loop. Defaults to `0`. ~~int~~ |
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| `max_steps` | Maximum number of update steps to train for. `0` means an unlimited number of steps. Defaults to `20000`. ~~int~~ |
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| `optimizer` | The optimizer. The learning rate schedule and other settings can be configured as part of the optimizer. Defaults to [`Adam`](https://thinc.ai/docs/api-optimizers#adam). ~~Optimizer~~ |
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| `patience` | How many steps to continue without improvement in evaluation score. `0` disables early stopping. Defaults to `1600`. ~~int~~ |
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| `score_weights` | Score names shown in metrics mapped to their weight towards the final weighted score. See [here](/usage/training#metrics) for details. Defaults to `{}`. ~~Dict[str, float]~~ |
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| `seed` | The random seed. Defaults to variable `${system.seed}`. ~~int~~ |
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| `train_corpus` | Dot notation of the config location defining the train corpus. Defaults to `corpora.train`. ~~str~~ |
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### pretraining {#config-pretraining tag="section,optional"}
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@ -245,14 +245,14 @@ and call the optimizer, while the others simply increment the gradients.
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> losses = trf.update(examples, sgd=optimizer)
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> ```
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| Name | Description |
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| ----------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `examples` | A batch of [`Example`](/api/example) objects. Only the [`Example.predicted`](/api/example#predicted) `Doc` object is used, the reference `Doc` is ignored. ~~Iterable[Example]~~ |
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| _keyword-only_ | |
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| `drop` | The dropout rate. ~~float~~ |
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| `sgd` | An optimizer. Will be created via [`create_optimizer`](#create_optimizer) if not set. ~~Optional[Optimizer]~~ |
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| `losses` | Optional record of the loss during training. Updated using the component name as the key. ~~Optional[Dict[str, float]]~~ |
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| **RETURNS** | The updated `losses` dictionary. ~~Dict[str, float]~~ |
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| Name | Description |
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| -------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `examples` | A batch of [`Example`](/api/example) objects. Only the [`Example.predicted`](/api/example#predicted) `Doc` object is used, the reference `Doc` is ignored. ~~Iterable[Example]~~ |
|
||||
| _keyword-only_ | |
|
||||
| `drop` | The dropout rate. ~~float~~ |
|
||||
| `sgd` | An optimizer. Will be created via [`create_optimizer`](#create_optimizer) if not set. ~~Optional[Optimizer]~~ |
|
||||
| `losses` | Optional record of the loss during training. Updated using the component name as the key. ~~Optional[Dict[str, float]]~~ |
|
||||
| **RETURNS** | The updated `losses` dictionary. ~~Dict[str, float]~~ |
|
||||
|
||||
## Transformer.create_optimizer {#create_optimizer tag="method"}
|
||||
|
||||
|
|
@ -493,6 +493,11 @@ This requires sentence boundaries to be set (e.g. by the
|
|||
depending on the sentence lengths. However, it does provide the transformer with
|
||||
more meaningful windows to attend over.
|
||||
|
||||
To set sentence boundaries with the `sentencizer` during training, add a
|
||||
`sentencizer` to the beginning of the pipeline and include it in
|
||||
[`[training.annotating_components]`](/usage/training#annotating-components) to
|
||||
have it set the sentence boundaries before the `transformer` component runs.
|
||||
|
||||
### strided_spans.v1 {#strided_spans tag="registered function"}
|
||||
|
||||
> #### Example config
|
||||
|
|
|
|||
|
|
@ -414,11 +414,11 @@ as-is. They are also excluded when calling
|
|||
> #### Note on frozen components
|
||||
>
|
||||
> Even though frozen components are not **updated** during training, they will
|
||||
> still **run** during training and evaluation. This is very important, because
|
||||
> they may still impact your model's performance – for instance, a sentence
|
||||
> boundary detector can impact what the parser or entity recognizer considers a
|
||||
> valid parse. So the evaluation results should always reflect what your
|
||||
> pipeline will produce at runtime.
|
||||
> still **run** during evaluation. This is very important, because they may
|
||||
> still impact your model's performance – for instance, a sentence boundary
|
||||
> detector can impact what the parser or entity recognizer considers a valid
|
||||
> parse. So the evaluation results should always reflect what your pipeline will
|
||||
> produce at runtime.
|
||||
|
||||
```ini
|
||||
[nlp]
|
||||
|
|
@ -455,6 +455,64 @@ replace_listeners = ["model.tok2vec"]
|
|||
|
||||
</Infobox>
|
||||
|
||||
### Using predictions from preceding components {#annotating-components new="3.1"}
|
||||
|
||||
By default, components are updated in isolation during training, which means
|
||||
that they don't see the predictions of any earlier components in the pipeline. A
|
||||
component receives [`Example.predicted`](/api/example) as input and compares its
|
||||
predictions to [`Example.reference`](/api/example) without saving its
|
||||
annotations in the `predicted` doc.
|
||||
|
||||
Instead, if certain components should **set their annotations** during training,
|
||||
use the setting `annotating_components` in the `[training]` block to specify a
|
||||
list of components. For example, the feature `DEP` from the parser could be used
|
||||
as a tagger feature by including `DEP` in the tok2vec `attrs` and including
|
||||
`parser` in `annotating_components`:
|
||||
|
||||
```ini
|
||||
### config.cfg (excerpt) {highlight="7,12"}
|
||||
[nlp]
|
||||
pipeline = ["parser", "tagger"]
|
||||
|
||||
[components.tagger.model.tok2vec.embed]
|
||||
@architectures = "spacy.MultiHashEmbed.v1"
|
||||
width = ${components.tagger.model.tok2vec.encode.width}
|
||||
attrs = ["NORM","DEP"]
|
||||
rows = [5000,2500]
|
||||
include_static_vectors = false
|
||||
|
||||
[training]
|
||||
annotating_components = ["parser"]
|
||||
```
|
||||
|
||||
Any component in the pipeline can be included as an annotating component,
|
||||
including frozen components. Frozen components can set annotations during
|
||||
training just as they would set annotations during evaluation or when the final
|
||||
pipeline is run. The config excerpt below shows how a frozen `ner` component and
|
||||
a `sentencizer` can provide the required `doc.sents` and `doc.ents` for the
|
||||
entity linker during training:
|
||||
|
||||
```ini
|
||||
### config.cfg (excerpt)
|
||||
[nlp]
|
||||
pipeline = ["sentencizer", "ner", "entity_linker"]
|
||||
|
||||
[components.ner]
|
||||
source = "en_core_web_sm"
|
||||
|
||||
[training]
|
||||
frozen_components = ["ner"]
|
||||
annotating_components = ["sentencizer", "ner"]
|
||||
```
|
||||
|
||||
<Infobox variant="warning" title="Training speed with annotating components" id="annotating-components-speed">
|
||||
|
||||
Be aware that non-frozen annotating components with statistical models will
|
||||
**run twice** on each batch, once to update the model and once to apply the
|
||||
now-updated model to the predicted docs.
|
||||
|
||||
</Infobox>
|
||||
|
||||
### Using registered functions {#config-functions}
|
||||
|
||||
The training configuration defined in the config file doesn't have to only
|
||||
|
|
|
|||
Loading…
Reference in New Issue
Block a user