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small fixes
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6521cfa132
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@ -116,8 +116,8 @@ def run_pipeline():
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# STEP 6: create the entity linking pipe
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if train_pipe:
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print("STEP 6: training Entity Linking pipe", datetime.datetime.now())
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train_limit = 100
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dev_limit = 20
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train_limit = 5000
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dev_limit = 1000
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print("Training on", train_limit, "articles")
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print("Dev testing on", dev_limit, "articles")
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print()
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@ -145,6 +145,7 @@ def run_pipeline():
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random.shuffle(train_data)
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losses = {}
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batches = minibatch(train_data, size=compounding(4.0, 128.0, 1.001))
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batchnr = 0
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with nlp.disable_pipes(*other_pipes):
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for batch in batches:
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@ -156,35 +157,43 @@ def run_pipeline():
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drop=DROPOUT,
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losses=losses,
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)
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batchnr += 1
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except Exception as e:
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print("Error updating batch", e)
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losses['entity_linker'] = losses['entity_linker'] / batchnr
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print("Epoch, train loss", itn, round(losses['entity_linker'], 2))
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# baseline using only prior probabilities
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el_pipe.context_weight = 0
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el_pipe.prior_weight = 1
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dev_acc_0_1 = _measure_accuracy(dev_data, el_pipe)
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train_acc_0_1 = _measure_accuracy(train_data, el_pipe)
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print()
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print("STEP 7: performance measurement of Entity Linking pipe", datetime.datetime.now())
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print()
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# print(" measuring accuracy 1-1")
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el_pipe.context_weight = 1
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el_pipe.prior_weight = 1
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dev_acc_1_1 = _measure_accuracy(dev_data, el_pipe)
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train_acc_1_1 = _measure_accuracy(train_data, el_pipe)
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print("train/dev acc combo:", round(train_acc_1_1, 2), round(dev_acc_1_1, 2))
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# print(" measuring accuracy 1-0")
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# baseline using only prior probabilities
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el_pipe.context_weight = 0
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el_pipe.prior_weight = 1
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dev_acc_0_1 = _measure_accuracy(dev_data, el_pipe)
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train_acc_0_1 = _measure_accuracy(train_data, el_pipe)
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print("train/dev acc prior:", round(train_acc_0_1, 2), round(dev_acc_0_1, 2))
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# using only context
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el_pipe.context_weight = 1
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el_pipe.prior_weight = 0
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dev_acc_1_0 = _measure_accuracy(dev_data, el_pipe)
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train_acc_1_0 = _measure_accuracy(train_data, el_pipe)
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print("train/dev acc, 1-1, 0-1, 1-0:" ,
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round(train_acc_1_1, 2), round(train_acc_0_1, 2), round(train_acc_1_0, 2), "/",
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round(dev_acc_1_1, 2), round(dev_acc_0_1, 2), round(dev_acc_1_0, 2))
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print("train/dev acc context:", round(train_acc_1_0, 2), round(dev_acc_1_0, 2))
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print()
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# test Entity Linker
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if to_test_pipeline:
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print()
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print("STEP 8: applying Entity Linking to toy example", datetime.datetime.now())
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print()
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run_el_toy_example(kb=my_kb, nlp=nlp)
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print()
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@ -197,9 +206,9 @@ def _measure_accuracy(data, el_pipe):
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correct = 0
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incorrect = 0
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docs = [d for d, g in data]
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docs = [d for d, g in data if len(d) > 0]
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docs = el_pipe.pipe(docs)
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golds = [g for d, g in data]
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golds = [g for d, g in data if len(d) > 0]
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for doc, gold in zip(docs, golds):
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try:
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@ -1188,7 +1188,7 @@ class EntityLinker(Pipe):
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def get_loss(self, docs, golds, scores):
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targets = [[1] for _ in golds] # assuming we're only using positive examples
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loss, gradients = self.get_cossim_loss_2(yh=scores, y=golds, t=targets)
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#loss = loss / len(golds)
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loss = loss / len(golds)
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return loss, gradients
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def get_cossim_loss_2(self, yh, y, t):
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