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* Add a parse_batch method to Parser, that releases the GIL around a batch of documents.

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This commit is contained in:
Matthew Honnibal 2016-02-01 08:34:55 +01:00
parent 80caba28c7
commit bcf8f7ba40
7 changed files with 89 additions and 48 deletions
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3
spacy/syntax/_parse_features.pxd
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@ -1,9 +1,10 @@
from thinc.typedefs cimport atom_t
from .stateclass cimport StateClass
from ._state cimport StateC
cdef int fill_context(atom_t* context, StateClass state) nogil
cdef int fill_context(atom_t* context, const StateC* state) nogil
# Context elements
# Ensure each token's attributes are listed: w, p, c, c6, c4. The order

3
spacy/syntax/_parse_features.pyx
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@ -14,6 +14,7 @@ from itertools import combinations
from ..structs cimport TokenC
from .stateclass cimport StateClass
from ._state cimport StateC
from cymem.cymem cimport Pool
@ -59,7 +60,7 @@ cdef inline void fill_token(atom_t* context, const TokenC* token) nogil:
context[10] = token.ent_iob
context[11] = token.ent_type
cdef int fill_context(atom_t* ctxt, StateClass st) nogil:
cdef int fill_context(atom_t* ctxt, const StateC* st) nogil:
# Take care to fill every element of context!
# We could memset, but this makes it very easy to have broken features that
# make almost no impact on accuracy. If instead they're unset, the impact

22
spacy/syntax/arc_eager.pyx
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@ -377,23 +377,23 @@ cdef class ArcEager(TransitionSystem):
raise Exception(move)
return t
cdef int initialize_state(self, StateClass st) except -1:
cdef int initialize_state(self, StateC* st) nogil:
# Ensure sent_start is set to 0 throughout
for i in range(st.c.length):
st.c._sent[i].sent_start = False
st.c._sent[i].l_edge = i
st.c._sent[i].r_edge = i
for i in range(st.length):
st._sent[i].sent_start = False
st._sent[i].l_edge = i
st._sent[i].r_edge = i
st.fast_forward()
cdef int finalize_state(self, StateClass st) nogil:
cdef int finalize_state(self, StateC* st) nogil:
cdef int i
for i in range(st.c.length):
if st.c._sent[i].head == 0 and st.c._sent[i].dep == 0:
st.c._sent[i].dep = self.root_label
for i in range(st.length):
if st._sent[i].head == 0 and st._sent[i].dep == 0:
st._sent[i].dep = self.root_label
# If we're not using the Break transition, we segment via root-labelled
# arcs between the root words.
elif USE_ROOT_ARC_SEGMENT and st.c._sent[i].dep == self.root_label:
st.c._sent[i].head = 0
elif USE_ROOT_ARC_SEGMENT and st._sent[i].dep == self.root_label:
st._sent[i].head = 0
cdef int set_valid(self, int* output, const StateC* st) nogil:
cdef bint[N_MOVES] is_valid

5
spacy/syntax/parser.pxd
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@ -6,14 +6,15 @@ from .stateclass cimport StateClass
from .arc_eager cimport TransitionSystem
from ..tokens.doc cimport Doc
from ..structs cimport TokenC
from ._state cimport StateC
cdef class ParserModel(AveragedPerceptron):
cdef void set_featuresC(self, ExampleC* eg, StateClass stcls) nogil
cdef void set_featuresC(self, ExampleC* eg, const StateC* state) nogil
cdef class Parser:
cdef readonly ParserModel model
cdef readonly TransitionSystem moves
cdef void parseC(self, Doc tokens, StateClass stcls, Example eg) nogil
cdef void parseC(self, TokenC* tokens, int length, int nr_feat, int nr_class) nogil

96
spacy/syntax/parser.pyx
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@ -1,3 +1,4 @@
# cython: infer_types=True
"""
MALT-style dependency parser
"""
@ -9,6 +10,7 @@ from cpython.exc cimport PyErr_CheckSignals
from libc.stdint cimport uint32_t, uint64_t
from libc.string cimport memset, memcpy
from libc.stdlib cimport malloc, calloc, free
import random
import os.path
from os import path
@ -21,6 +23,7 @@ from murmurhash.mrmr cimport hash64
from thinc.typedefs cimport weight_t, class_t, feat_t, atom_t, hash_t
from thinc.linear.avgtron cimport AveragedPerceptron
from thinc.linalg cimport VecVec
from thinc.structs cimport FeatureC
from util import Config
@ -38,6 +41,7 @@ from . import _parse_features
from ._parse_features cimport CONTEXT_SIZE
from ._parse_features cimport fill_context
from .stateclass cimport StateClass
from ._state cimport StateC
@ -65,8 +69,8 @@ def ParserFactory(transition_system):
cdef class ParserModel(AveragedPerceptron):
cdef void set_featuresC(self, ExampleC* eg, StateClass stcls) nogil:
fill_context(eg.atoms, stcls)
cdef void set_featuresC(self, ExampleC* eg, const StateC* state) nogil:
fill_context(eg.atoms, state)
eg.nr_feat = self.extracter.set_features(eg.features, eg.atoms)
@ -99,43 +103,77 @@ cdef class Parser:
return (Parser, (self.moves.strings, self.moves, self.model), None, None)
def __call__(self, Doc tokens):
cdef StateClass stcls = StateClass.init(tokens.c, tokens.length)
self.moves.initialize_state(stcls)
cdef Example eg = Example(
nr_class=self.moves.n_moves,
nr_atom=CONTEXT_SIZE,
nr_feat=self.model.nr_feat)
cdef int nr_class = self.moves.n_moves
cdef int nr_feat = self.model.nr_feat
with nogil:
self.parseC(tokens, stcls, eg)
self.parseC(tokens.c, tokens.length, nr_feat, nr_class)
tokens.is_parsed = True
# Check for KeyboardInterrupt etc. Untested
PyErr_CheckSignals()
cdef void parseC(self, Doc tokens, StateClass stcls, Example eg) nogil:
while not stcls.is_final():
self.model.set_featuresC(&eg.c, stcls)
self.moves.set_valid(eg.c.is_valid, stcls.c)
self.model.set_scoresC(eg.c.scores, eg.c.features, eg.c.nr_feat)
def parse_batch(self, batch):
cdef TokenC** doc_ptr = <TokenC**>calloc(len(batch), sizeof(TokenC*))
cdef int* lengths = <int*>calloc(len(batch), sizeof(int))
cdef Doc doc
cdef int i
for i, doc in enumerate(batch):
doc_ptr[i] = doc.c
lengths[i] = doc.length
cdef int nr_class = self.moves.n_moves
cdef int nr_feat = self.model.nr_feat
cdef int nr_doc = len(batch)
with nogil:
for i in range(nr_doc):
self.parseC(doc_ptr[i], lengths[i], nr_feat, nr_class)
for doc in batch:
doc.is_parsed = True
# Check for KeyboardInterrupt etc. Untested
PyErr_CheckSignals()
free(doc_ptr)
free(lengths)
guess = VecVec.arg_max_if_true(eg.c.scores, eg.c.is_valid, eg.c.nr_class)
cdef void parseC(self, TokenC* tokens, int length, int nr_feat, int nr_class) nogil:
cdef ExampleC eg
eg.nr_feat = nr_feat
eg.nr_atom = CONTEXT_SIZE
eg.nr_class = nr_class
eg.features = <FeatureC*>calloc(sizeof(FeatureC), nr_feat)
eg.atoms = <atom_t*>calloc(sizeof(atom_t), CONTEXT_SIZE)
eg.scores = <weight_t*>calloc(sizeof(weight_t), nr_class)
eg.is_valid = <int*>calloc(sizeof(int), nr_class)
state = new StateC(tokens, length)
self.moves.initialize_state(state)
cdef int i
while not state.is_final():
self.model.set_featuresC(&eg, state)
self.moves.set_valid(eg.is_valid, state)
self.model.set_scoresC(eg.scores, eg.features, eg.nr_feat)
guess = VecVec.arg_max_if_true(eg.scores, eg.is_valid, eg.nr_class)
action = self.moves.c[guess]
if not eg.c.is_valid[guess]:
if not eg.is_valid[guess]:
with gil:
move_name = self.moves.move_name(action.move, action.label)
raise ValueError("Illegal action: %s" % move_name)
action.do(stcls.c, action.label)
memset(eg.c.scores, 0, sizeof(eg.c.scores[0]) * eg.c.nr_class)
memset(eg.c.costs, 0, sizeof(eg.c.costs[0]) * eg.c.nr_class)
for i in range(eg.c.nr_class):
eg.c.is_valid[i] = 1
self.moves.finalize_state(stcls)
tokens.set_parse(stcls.c._sent)
action.do(state, action.label)
memset(eg.scores, 0, sizeof(eg.scores[0]) * eg.nr_class)
memset(eg.costs, 0, sizeof(eg.costs[0]) * eg.nr_class)
for i in range(eg.nr_class):
eg.is_valid[i] = 1
self.moves.finalize_state(state)
for i in range(length):
tokens[i] = state._sent[i]
del state
free(eg.features)
free(eg.atoms)
free(eg.scores)
free(eg.is_valid)
def train(self, Doc tokens, GoldParse gold):
self.moves.preprocess_gold(gold)
cdef StateClass stcls = StateClass.init(tokens.c, tokens.length)
self.moves.initialize_state(stcls)
self.moves.initialize_state(stcls.c)
cdef Pool mem = Pool()
cdef Example eg = Example(
nr_class=self.moves.n_moves,
@ -144,7 +182,7 @@ cdef class Parser:
cdef weight_t loss = 0
cdef Transition action
while not stcls.is_final():
self.model.set_featuresC(&eg.c, stcls)
self.model.set_featuresC(&eg.c, stcls.c)
self.moves.set_costs(eg.c.is_valid, eg.c.costs, stcls, gold)
self.model.set_scoresC(eg.c.scores, eg.c.features, eg.c.nr_feat)
self.model.updateC(&eg.c)
@ -174,7 +212,7 @@ cdef class StepwiseState:
self.parser = parser
self.doc = doc
self.stcls = StateClass.init(doc.c, doc.length)
self.parser.moves.initialize_state(self.stcls)
self.parser.moves.initialize_state(self.stcls.c)
self.eg = Example(
nr_class=self.parser.moves.n_moves,
nr_atom=CONTEXT_SIZE,
@ -209,7 +247,7 @@ cdef class StepwiseState:
def predict(self):
self.eg.reset()
self.parser.model.set_featuresC(&self.eg.c, self.stcls)
self.parser.model.set_featuresC(&self.eg.c, self.stcls.c)
self.parser.moves.set_valid(self.eg.c.is_valid, self.stcls.c)
self.parser.model.set_scoresC(self.eg.c.scores,
self.eg.c.features, self.eg.c.nr_feat)
@ -234,7 +272,7 @@ cdef class StepwiseState:
def finish(self):
if self.stcls.is_final():
self.parser.moves.finalize_state(self.stcls)
self.parser.moves.finalize_state(self.stcls.c)
self.doc.set_parse(self.stcls.c._sent)

4
spacy/syntax/transition_system.pxd
View File

@ -38,8 +38,8 @@ cdef class TransitionSystem:
cdef public int root_label
cdef public freqs
cdef int initialize_state(self, StateClass state) except -1
cdef int finalize_state(self, StateClass state) nogil
cdef int initialize_state(self, StateC* state) nogil
cdef int finalize_state(self, StateC* state) nogil
cdef int preprocess_gold(self, GoldParse gold) except -1

4
spacy/syntax/transition_system.pyx
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@ -47,10 +47,10 @@ cdef class TransitionSystem:
(self.strings, labels_by_action, self.freqs),
None, None)
cdef int initialize_state(self, StateClass state) except -1:
cdef int initialize_state(self, StateC* state) nogil:
pass
cdef int finalize_state(self, StateClass state) nogil:
cdef int finalize_state(self, StateC* state) nogil:
pass
cdef int preprocess_gold(self, GoldParse gold) except -1: