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1064 Commits

Author SHA1 Message Date
Matthew Honnibal
74d8cb3980 * Add noun_chunks iterator, and fix left/right child setting in Doc.merge 2015-07-30 02:29:49 +02:00
Matthew Honnibal
d153f18969 * Fix negative indices on spans 2015-07-29 22:36:03 +02:00
Matthew Honnibal
b5132bed7d * Set left and right children when loading parse from byte string 2015-07-28 21:03:18 +02:00
Matthew Honnibal
6609fcf4b2 * Make mem and vocab python-visible in Doc 2015-07-28 20:46:59 +02:00
Matthew Honnibal
d42fe2e694 * Add unicode_literals to strings.pyx 2015-07-28 16:15:53 +02:00
Matthew Honnibal
bb910cff92 * Fix Python3 problem in align_raw 2015-07-28 16:06:53 +02:00
Matthew Honnibal
dcafb181b9 * Fix Python3 problem in align_raw 2015-07-28 15:52:10 +02:00
Matthew Honnibal
c609ea18f0 * Increment version in download script 2015-07-28 15:22:17 +02:00
Matthew Honnibal
9c4d0aae62 * Switch to better Python2/3 compatible unicode handling 2015-07-28 14:45:37 +02:00
Matthew Honnibal
7606d9936f * Python3 correction for GoldParse 2015-07-28 14:44:53 +02:00
Matthew Honnibal
ddc1a5cfe5 * Fix training under python3 2015-07-28 14:09:30 +02:00
Matthew Honnibal
a8bbd7312c * Hackishly patch long dependencies problem 2015-07-28 00:14:29 +02:00
Matthew Honnibal
bb583f7f09 * Hackishly patch long dependencies problem 2015-07-27 23:14:33 +02:00
Matthew Honnibal
aa7a964a4f * Add a type declaration for doc.from_array 2015-07-27 22:57:22 +02:00
Matthew Honnibal
25a8774f42 * Fix regression in packer 2015-07-27 21:53:38 +02:00
Matthew Honnibal
1601e488ee * Fix bug in decoding non-ascii characters 2015-07-27 21:43:58 +02:00
Matthew Honnibal
6a95409cd2 * Fix type on bits 2015-07-27 21:16:49 +02:00
Matthew Honnibal
a296d72b54 * Fix en/attrs 2015-07-27 21:16:33 +02:00
Matthew Honnibal
45460f505c * Fix data type on read32 in BitArray 2015-07-27 21:12:13 +02:00
Matthew Honnibal
3d43f49f69 * Revert prev change 2015-07-27 10:58:15 +02:00
Matthew Honnibal
6b586cdad4 * Change lexemes.bin format. Add a header specifying size of LexemeC and number of lexemes, and don't have the redundant orth information. 2015-07-27 08:31:51 +02:00
Matthew Honnibal
af6ed18f2a * Ensure we don't use orth_encode on OOV words. 2015-07-27 02:12:01 +02:00
Matthew Honnibal
8535d872e8 * Set is_oov property in get_flags 2015-07-27 01:51:24 +02:00
Matthew Honnibal
8e4c69ee8c * Add is_oov property, and fix up handling of attributes 2015-07-27 01:50:06 +02:00
Matthew Honnibal
fc268f03eb * Assert against null pointer exceptions in vocab 2015-07-27 01:00:10 +02:00
Matthew Honnibal
0f093fdb30 * Fix get_by_orth for py3 2015-07-26 19:26:41 +02:00
Matthew Honnibal
ceeda5a739 * Fix get_by_orth for py3 2015-07-26 18:39:27 +02:00
Matthew Honnibal
6bb96c122d * Host IS_ flags in attrs.pxd, and add properties for them on Token and Lexeme objects 2015-07-26 16:37:16 +02:00
Matthew Honnibal
eeaea25f0c * Check oov_prob file is present 2015-07-26 16:36:38 +02:00
Matthew Honnibal
7eb2446082 * Return empty lexeme on empty string 2015-07-26 00:18:30 +02:00
Matthew Honnibal
1b5d1da2a7 * Allow an OOV probability to be specified in get_lex_props 2015-07-26 00:03:43 +02:00
Matthew Honnibal
cd6e25132b * Allow an OOV probability to be specified in get_lex_props 2015-07-26 00:01:46 +02:00
Matthew Honnibal
fd525f0675 * Pass OOV probability around 2015-07-25 23:29:51 +02:00
Matthew Honnibal
3fe14b8ed6 * Fix CFile for Python2 2015-07-25 22:55:53 +02:00
Matthew Honnibal
823ef4a00b * Remove profile declarations 2015-07-25 18:13:06 +02:00
Matthew Honnibal
f4809e562f * Allow json to be used as a fallback if ujson is not available 2015-07-25 18:11:36 +02:00
Matthew Honnibal
9da06671cf * Remove unused import 2015-07-25 18:11:16 +02:00
Matthew Honnibal
2060935cdb * Remove explicit bytes type in doc.from_bytes, to accept bytearray 2015-07-24 04:54:13 +02:00
Matthew Honnibal
aa28e2e01d * Release the GIL around parse function 2015-07-24 04:53:27 +02:00
Matthew Honnibal
d62eb34b76 * More Py 2/3 compatibility in bit strings 2015-07-24 04:52:06 +02:00
Matthew Honnibal
0bb839d299 * Fix string coercion for Python 3 2015-07-24 03:49:30 +02:00
Matthew Honnibal
c4ff410fdb * Fix bytes problems for Python3 2015-07-24 03:48:23 +02:00
Matthew Honnibal
1ab25e4dad * Fix python3 type error 2015-07-24 02:45:34 +02:00
Matthew Honnibal
f35ff173b0 * Fix bits.pyx unicode error 2015-07-23 20:37:57 +02:00
Matthew Honnibal
1406e24327 * Fix unicode error for Python3 2015-07-23 19:36:21 +02:00
Matthew Honnibal
dbda6c27fa * Fix python3 error 2015-07-23 14:52:30 +02:00
Matthew Honnibal
99387f9572 * Fix python3 error 2015-07-23 14:30:29 +02:00
Matthew Honnibal
b81ffe9032 * Fix typing on mode string in CFile 2015-07-23 13:24:43 +02:00
Matthew Honnibal
22028602a9 * Add unicode_literals declaration in vocab.pyx 2015-07-23 13:24:20 +02:00
Matthew Honnibal
5b41744270 * Check for directory presence before loading annotators 2015-07-23 09:27:37 +02:00
Matthew Honnibal
df01a88763 Merge branch 'refactor' (and serializaton) 
Add Huffman-code serialization, and do a lot of
refactoring. Highlights include:

* Much more efficient StringStore
* Vocab maintains a by-orth mapping of Lexemes
* Avoid manually slicing Py_UNICODE buffers,
  simplifying tokenizer and vocab C APIs
* Remove various bits of dead code
* Work on removing GIL around parser
* Work on bridge to Theano

Conflicts:
	spacy/strings.pxd
	spacy/strings.pyx
	spacy/structs.pxd
 2015-07-23 02:18:35 +02:00
Matthew Honnibal
a7c4d72e83 * Add serializer property to Vocab, and lazy-load it. Add get_by_orth method. 2015-07-23 01:18:19 +02:00
Matthew Honnibal
6ab1696b15 * Remove read_encoding_freqs from util.py 2015-07-23 01:17:32 +02:00
Matthew Honnibal
d5255aad77 * Update freqs for missing tags in ner, for serializer 2015-07-23 01:17:11 +02:00
Matthew Honnibal
12699a1152 * Set initial freqs, to avoid missing values in serializer 2015-07-23 01:16:27 +02:00
Matthew Honnibal
680bb47b55 * Write serializer freqs to single file, vocab/serializer.json 2015-07-23 01:15:25 +02:00
Matthew Honnibal
a0e36e8efc * Add working to/from bytes API to Doc 2015-07-23 01:14:45 +02:00
Matthew Honnibal
1f31d96bf9 * Fix Packer API, so that it reads and writes bytes strings, instead of BitArray. Docs are always byte aligned anyway. 2015-07-23 01:13:02 +02:00
Matthew Honnibal
38ef986b29 * Update spacy/en/attrs.pxd 2015-07-23 01:10:58 +02:00
Matthew Honnibal
06eac32610 * Add cfile.pyx 2015-07-23 01:10:36 +02:00
Matthew Honnibal
0c507bd80a * Fix tokenizer 2015-07-22 14:10:30 +02:00
Matthew Honnibal
c86dbe4944 * Update English.save_models for new Packer save/load stuff 2015-07-22 13:40:23 +02:00
Matthew Honnibal
bf77bcd6b9 * Add comment explaining hash_string 2015-07-22 13:39:42 +02:00
Matthew Honnibal
815bda201d * Remove UniStr struct 2015-07-22 13:39:17 +02:00
Matthew Honnibal
2fc66e3723 * Use Py_UNICODE in tokenizer for now, while sort out Py_UCS4 stuff 2015-07-22 13:38:45 +02:00
Matthew Honnibal
4d61239eac * Reorganize the serialization functions on Doc 2015-07-22 04:53:01 +02:00
Matthew Honnibal
109106a949 * Replace UniStr, using unicode objects instead 2015-07-22 04:52:05 +02:00
Matthew Honnibal
424854028f * Fix decode_int32 2015-07-21 20:09:59 +00:00
Matthew Honnibal
304d0e2633 * Use decode_int32 in _orth_decode 2015-07-21 20:40:55 +02:00
Matthew Honnibal
9cfa59ec33 * Optimistically try orth encoding, with char as a back-off 2015-07-21 20:22:45 +02:00
Matthew Honnibal
c8b89e37a5 * Bug fix to faster huffman decoding 2015-07-21 20:05:53 +02:00
Matthew Honnibal
b166d1d2a2 * Use encode32 and decode32 2015-07-21 19:59:06 +02:00
Matthew Honnibal
c6cd0ddce8 * Add faster encode_int32 and decode_int32 methods 2015-07-21 19:58:45 +02:00
Matthew Honnibal
dd60594f41 * Fix double encoding error in strings.pyx 2015-07-20 13:52:56 +02:00
Matthew Honnibal
06639dc497 * Add length cap to word shape feature 2015-07-20 12:06:59 +02:00
Matthew Honnibal
128b6d9714 * Move Utf8Str struct to strings module, as that's the only place it's relevant 2015-07-20 12:06:41 +02:00
Matthew Honnibal
01a97b90f3 * Fix header for string store 2015-07-20 12:06:10 +02:00
Matthew Honnibal
52d538ea42 * Fix short string optimization in strings.pyx. StringStore tests now all pass. 2015-07-20 12:05:23 +02:00
Matthew Honnibal
09a3055630 * Work on short string optimization in Utf8Str 2015-07-20 11:26:46 +02:00
Matthew Honnibal
bb0ba1f0cd * Improve serialization speed 2015-07-20 03:27:59 +02:00
Matthew Honnibal
8743a8c084 * Update Doc serialization for new Packer interface 2015-07-20 01:38:04 +02:00
Matthew Honnibal
1f7170e0e1 * Reinstate the fixed vocabulary --- words are only added to the lexicon in init_model, after that we create LexemeC structs with the Pool given to us. 2015-07-20 01:37:34 +02:00
Matthew Honnibal
5a7d060d9c * Switch between the orth and char codecs depending on which is shorter for that message. Mostly orth is shorter, except if there are OOV words. 2015-07-20 01:36:22 +02:00
Matthew Honnibal
5a042ee0d3 * Add function to predict number of bits needed to encode message 2015-07-20 01:35:11 +02:00
Matthew Honnibal
b89b489bb4 * Implement both character and orth encoding in Packer, so that we can decide which to use per-text 2015-07-19 22:39:45 +02:00
Matthew Honnibal
ae78c9e3ce * Implement character-based codec, so that we can do word/char backoff 2015-07-19 22:03:39 +02:00
Matthew Honnibal
cd1d047cb8 * Delete out-dated HuffmanCodec comment 2015-07-19 18:28:14 +02:00
Matthew Honnibal
b8086067d5 * Build Huffman codec from unsorted inputs 2015-07-19 17:58:44 +02:00
Matthew Honnibal
317cbbc015 * Serialization round trip now working with decent API, but with rough spots in the organisation and requiring vocabulary to be fixed ahead of time. 2015-07-19 15:18:17 +02:00
Matthew Honnibal
6b13e7227c * Remove duplicate get_lex_attr method from doc.pyx 2015-07-18 22:46:07 +02:00
Matthew Honnibal
e49c7f1478 * Update oov check in tokenizer 2015-07-18 22:45:28 +02:00
Matthew Honnibal
cfd842769e * Allow infix tokens to be variable length 2015-07-18 22:45:00 +02:00
Matthew Honnibal
5b4c78bbb2 * Use an AttributeCodec based on orth for words. Still no oov handling mechanism. 2015-07-18 22:43:18 +02:00
Matthew Honnibal
82d84b0f2b * Index lexemes by orth, instead of a lexemes vector. Breaks the mechanism for deciding not to own LexemeC structs during parsing. Need to reinstate this. 2015-07-18 22:42:15 +02:00
Matthew Honnibal
4dddc8a69b * Fix type declarations for attr_t. Remove unused id_t. 2015-07-18 22:39:57 +02:00
Matthew Honnibal
ced59ab9ea * Make minor efficiency improvement in Doc.__iter__ 2015-07-18 04:10:53 +02:00
Matthew Honnibal
cd91914dd8 * Fix hard-coded length 2015-07-18 04:09:56 +02:00
Matthew Honnibal
b1d74ce60d * Remove unused joint.pyx and joint.pxd files 2015-07-17 23:31:44 +02:00
Matthew Honnibal
c27514512b * Remove cruft ner/ directory 2015-07-17 23:24:32 +02:00
Matthew Honnibal
f8d6d319f4 * Remove cruft module 2015-07-17 23:23:05 +02:00
Matthew Honnibal
fb0a641a2d * Don't release the gil around Parser.parse. Does this indicate thread problems? 2015-07-17 23:07:37 +02:00
Matthew Honnibal
e29daea85f * Fix bint/int typing problem in TransitionSystem. In C++ bint* means bool*, but in C it means int*. So, type-casting to bint* is unsafe. 2015-07-17 22:37:24 +02:00
Matthew Honnibal
cf0c788892 * Tests passing on round-trip pack/unpack on basic example 2015-07-17 21:20:48 +02:00
Matthew Honnibal
44f39a876f * Add a blank attrs.pyx 2015-07-17 16:40:42 +02:00
Matthew Honnibal
c2c83120d4 * Remove codec property from Vocab 2015-07-17 16:40:11 +02:00
Matthew Honnibal
dfdf19f6a9 * Draft a from_orth method for Doc 2015-07-17 16:39:54 +02:00
Matthew Honnibal
9e3f17051b * Move to ORTH instead of ID for encoding lexemes. Basic tests of the codec wrappers now passing 2015-07-17 16:38:29 +02:00
Matthew Honnibal
15ff739996 * Fix passing of ID attribute in string store 2015-07-17 14:49:42 +02:00
Matthew Honnibal
95e57c2780 * Remove unnecessary key and id properties from Utf8String. 2015-07-17 01:40:18 +02:00
Matthew Honnibal
234c7e440a * Add spacy/serialize/__init__ files 2015-07-17 01:37:33 +02:00
Matthew Honnibal
db9dfd2e23 * Major refactor of serialization. Nearly complete now. 2015-07-17 01:27:54 +02:00
Matthew Honnibal
c8282f9934 * Work on serialization. Needs more reorganisation 2015-07-16 19:56:02 +02:00
Matthew Honnibal
d8458d6a25 * Fix attr_id_t import in Spans 2015-07-16 19:55:21 +02:00
Matthew Honnibal
d1cb30dbc4 * Remove unnecessary key and id properties from Utf8String. 2015-07-16 19:29:02 +02:00
Matthew Honnibal
897de2d438 * Add 'bitter' property for serializer in English class 2015-07-16 17:47:53 +02:00
Matthew Honnibal
fb54052ae0 * Work on serializer design 2015-07-16 17:46:46 +02:00
Matthew Honnibal
a6f401580d * Add from_array function to Doc. 2015-07-16 17:46:11 +02:00
Matthew Honnibal
2a5d050134 * Give codec loading back to Vocab. 2015-07-16 17:45:42 +02:00
Matthew Honnibal
8bf0f65f1c * Remove dead code in strings.pyx 2015-07-16 17:35:53 +02:00
Matthew Honnibal
a9c3863665 * Fix inefficiency in StringStore.dump function 2015-07-16 17:34:32 +02:00
Matthew Honnibal
b59d271510 * Move serialization functionality into Serializer class 2015-07-16 11:23:48 +02:00
Matthew Honnibal
30be4f15da * Import attrs from spacy.attrs, not spacy.typedefs 2015-07-16 11:23:25 +02:00
Matthew Honnibal
6c99e5f4aa * Move serialization into Serializer class, with __call__ and train() api 2015-07-16 11:22:35 +02:00
Matthew Honnibal
e2133d990e * Move serialization functionality out into a Serializer object 2015-07-16 11:21:44 +02:00
Matthew Honnibal
a6d040bd11 * Import Lexeme attrs from spacy.attrs, not spacy.typedefs 2015-07-16 11:20:08 +02:00
Matthew Honnibal
45ae1ce428 * Remove unused declaration in parser 2015-07-16 01:27:11 +02:00
Matthew Honnibal
efa80096f1 * Upd attrs id list 2015-07-16 01:26:54 +02:00
Matthew Honnibal
01fab6bb90 * Improve de/serialize functions 2015-07-16 01:26:35 +02:00
Matthew Honnibal
0e07c1ed2a * draft de/serialization functions in doc.pyx 2015-07-16 01:16:33 +02:00
Matthew Honnibal
9d956b07e9 * Fix import of attrs in doc.pyx, and update the get_token_attr function. 2015-07-16 01:15:34 +02:00
Matthew Honnibal
65251e7625 * Remove redundant attr_id_t from typedefs.pxd 2015-07-16 00:58:51 +02:00
Matthew Honnibal
9a8db9743c * Remove gil from parser.call 2015-07-14 23:47:33 +02:00
Matthew Honnibal
38ca0c33f5 Merge branch 'neuralnet' into refactor 
Mostly refactors parser, to use new thinc3.2 Example class.
Aim is to remove use of shared memory, so that we can parallelize
over documents easily.

Conflicts:
	setup.py
	spacy/syntax/parser.pxd
	spacy/syntax/parser.pyx
	spacy/syntax/stateclass.pyx
 2015-07-14 14:13:47 +02:00
Matthew Honnibal
935ac53ee3 * Extend count_by method 2015-07-14 03:20:09 +02:00
Matthew Honnibal
3b5baa660f * Fix tokenizer 2015-07-14 00:10:51 +02:00
Matthew Honnibal
2ae0b439b2 * Fix space check in gold.pyx 2015-07-14 00:10:27 +02:00
Matthew Honnibal
81aa4e6dcc * Go back to having token reference doc, instead of complicated gymnastics. Rename the attr 'doc', to expose it in the API 2015-07-14 00:10:11 +02:00
Matthew Honnibal
24d6ce99ec * Add comment to tokenizer, explaining the spacy attr 2015-07-13 22:29:13 +02:00
Matthew Honnibal
8214b74eec * Restore _py_tokens cache, to handle orphan tokens. 2015-07-13 22:28:10 +02:00
Matthew Honnibal
67641f3b58 * Refactor tokenizer, to set the 'spacy' field on TokenC instead of passing a string 2015-07-13 21:46:02 +02:00
Matthew Honnibal
6eef0bf9ab * Break up tokens.pyx into tokens/doc.pyx, tokens/token.pyx, tokens/spans.pyx 2015-07-13 20:20:58 +02:00
Matthew Honnibal
3ea8756c24 * Add spacy/tokens/doc.pyx, for Doc class in its own file 2015-07-13 19:58:26 +02:00
Matthew Honnibal
c99387155f * Refactor tokens, moving classes into a module instead of a single file 2015-07-13 19:49:55 +02:00
Matthew Honnibal
d27899658e * Import classes in spacy.tokens.__init__ 2015-07-13 19:48:55 +02:00
Matthew Honnibal
aa82caf8f5 * Add TokenC.spacy attr 2015-07-13 19:48:07 +02:00
Matthew Honnibal
dba6b47d4e * Refactor monster tokens.pyx file, into a tokens/ subpackage. Try to break the cycle between Doc and Token, and remove the need to pass around a unicode string reference 2015-07-13 19:20:48 +02:00
Matthew Honnibal
5b0a7190c9 * Round-trip for serialization finally working. Needs a lot of optimization. 2015-07-13 18:39:38 +02:00
Matthew Honnibal
edd371246c * Make huffman coder take BitArray in encode/decode. Add __iter__ method to BitArray. 2015-07-13 17:33:33 +02:00
Matthew Honnibal
af5cc926a4 * Add codec property to Vocab, to use the Huffman encoding 2015-07-13 13:55:14 +02:00
Matthew Honnibal
77385d5580 * Make .pxd file for huffman codec 2015-07-13 13:54:51 +02:00