Commit Graph

37 Commits

Author SHA1 Message Date
Adriane Boyd
a77c4c3465
Add strings and ENT_KB_ID to Doc serialization (#5691)
* Add strings for all writeable Token attributes to `Doc.to/from_bytes()`.
* Add ENT_KB_ID to default attributes.
2020-07-02 17:11:57 +02:00
Adriane Boyd
bc39f97e11 Simplify warnings 2020-04-28 13:37:37 +02:00
Sofie Van Landeghem
c6b12ab02a
Bugfix/get doc (#5049)
* new (broken) unit test

* fixing get_doc method
2020-03-02 11:49:28 +01:00
adrianeboyd
5b102963bf
Require HEAD for is_parsed in Doc.from_array() (#5011)
Modify flag settings so that `DEP` is not sufficient to set `is_parsed`
and only run `set_children_from_heads()` if `HEAD` is provided.

Then the combination `[SENT_START, DEP]` will set deps and not clobber
sent starts with a lot of one-word sentences.
2020-02-16 17:17:09 +01:00
Ines Montani
3d8fd4b461 Revert #4334 2019-09-29 17:32:12 +02:00
Ines Montani
c9cd516d96 Move tests out of package (#4334)
* Move tests out of package

* Fix typo
2019-09-28 18:05:00 +02:00
Ines Montani
ebcf2bb1c3 Add Doc.lang and Doc.lang_ 2019-03-11 14:21:40 +01:00
Ines Montani
7ba3a5d95c 💫 Make serialization methods consistent (#3385)
* Make serialization methods consistent

exclude keyword argument instead of random named keyword arguments and deprecation handling

* Update docs and add section on serialization fields
2019-03-10 19:16:45 +01:00
Ines Montani
0426689db8 💫 Improve Doc.to_json and add Doc.is_nered (#3381)
* Use default return instead of else

* Add Doc.is_nered to indicate if entities have been set

* Add properties in Doc.to_json if they were set, not if they're available

This way, if a processed Doc exports "pos": None, it means that the tag was explicitly unset. If it exports "ents": [], it means that entity annotations are available but that this document doesn't contain any entities. Before, this would have been unclear and problematic for training.
2019-03-10 15:24:34 +01:00
Ines Montani
d8f69d592f Tidy up retokenizer tests 2019-02-24 14:14:11 +01:00
Ines Montani
5651a0d052 💫 Replace {Doc,Span}.merge with Doc.retokenize (#3280)
* Add deprecation warning to Doc.merge and Span.merge

* Replace {Doc,Span}.merge with Doc.retokenize
2019-02-15 10:29:44 +01:00
Ines Montani
fe39fd4d13 Make warning tests more explicit 2019-02-10 14:02:19 +01:00
Ines Montani
5d0b60999d Merge branch 'master' into develop 2019-02-07 20:54:07 +01:00
Álvaro Abella Bascarán
e03e1eee92 Bugfix/get lca matrix (#3110)
This PR adds a test for an untested case of `Span.get_lca_matrix`, and fixes a bug for that scenario, which I introduced in [this PR](https://github.com/explosion/spaCy/pull/3089) (sorry!).

## Description
The previous implementation of get_lca_matrix was failing for the case `doc[j:k].get_lca_matrix()` where `j > 0`. A test has been added for this case and the bug has been fixed.

### Types of change
Bug fix

## Checklist

- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-01-06 19:07:50 +01:00
Ines Montani
61d09c481b Merge branch 'master' into develop 2018-12-18 13:48:10 +01:00
Ines Montani
37c7c85a86 💫 New JSON helpers, training data internals & CLI rewrite (#2932)
* Support nowrap setting in util.prints

* Tidy up and fix whitespace

* Simplify script and use read_jsonl helper

* Add JSON schemas (see #2928)

* Deprecate Doc.print_tree

Will be replaced with Doc.to_json, which will produce a unified format

* Add Doc.to_json() method (see #2928)

Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.

* Remove outdated test

* Add write_json and write_jsonl helpers

* WIP: Update spacy train

* Tidy up spacy train

* WIP: Use wasabi for formatting

* Add GoldParse helpers for JSON format

* WIP: add debug-data command

* Fix typo

* Add missing import

* Update wasabi pin

* Add missing import

* 💫 Refactor CLI (#2943)

To be merged into #2932.

## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)

### Types of change
enhancement

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Update wasabi pin

* Delete old test

* Update errors

* Fix typo

* Tidy up and format remaining code

* Fix formatting

* Improve formatting of messages

* Auto-format remaining code

* Add tok2vec stuff to spacy.train

* Fix typo

* Update wasabi pin

* Fix path checks for when train() is called as function

* Reformat and tidy up pretrain script

* Update argument annotations

* Raise error if model language doesn't match lang

* Document new train command
2018-11-30 20:16:14 +01:00
Ines Montani
323fc26880 Tidy up and format remaining files 2018-11-30 17:43:08 +01:00
Ines Montani
d33953037e
💫 Port master changes over to develop (#2979)
* Create aryaprabhudesai.md (#2681)

* Update _install.jade (#2688)

Typo fix: "models" -> "model"

* Add FAC to spacy.explain (resolves #2706)

* Remove docstrings for deprecated arguments (see #2703)

* When calling getoption() in conftest.py, pass a default option (#2709)

* When calling getoption() in conftest.py, pass a default option

This is necessary to allow testing an installed spacy by running:

  pytest --pyargs spacy

* Add contributor agreement

* update bengali token rules for hyphen and digits (#2731)

* Less norm computations in token similarity (#2730)

* Less norm computations in token similarity

* Contributor agreement

* Remove ')' for clarity (#2737)

Sorry, don't mean to be nitpicky, I just noticed this when going through the CLI and thought it was a quick fix. That said, if this was intention than please let me know.

* added contributor agreement for mbkupfer (#2738)

* Basic support for Telugu language (#2751)

* Lex _attrs for polish language (#2750)

* Signed spaCy contributor agreement

* Added polish version of english lex_attrs

* Introduces a bulk merge function, in order to solve issue #653 (#2696)

* Fix comment

* Introduce bulk merge to increase performance on many span merges

* Sign contributor agreement

* Implement pull request suggestions

* Describe converters more explicitly (see #2643)

* Add multi-threading note to Language.pipe (resolves #2582) [ci skip]

* Fix formatting

* Fix dependency scheme docs (closes #2705) [ci skip]

* Don't set stop word in example (closes #2657) [ci skip]

* Add words to portuguese language _num_words (#2759)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Update Indonesian model (#2752)

* adding e-KTP in tokenizer exceptions list

* add exception token

* removing lines with containing space as it won't matter since we use .split() method in the end, added new tokens in exception

* add tokenizer exceptions list

* combining base_norms with norm_exceptions

* adding norm_exception

* fix double key in lemmatizer

* remove unused import on punctuation.py

* reformat stop_words to reduce number of lines, improve readibility

* updating tokenizer exception

* implement is_currency for lang/id

* adding orth_first_upper in tokenizer_exceptions

* update the norm_exception list

* remove bunch of abbreviations

* adding contributors file

* Fixed spaCy+Keras example (#2763)

* bug fixes in keras example

* created contributor agreement

* Adding French hyphenated first name (#2786)

* Fix typo (closes #2784)

* Fix typo (#2795) [ci skip]

Fixed typo on line 6 "regcognizer --> recognizer"

* Adding basic support for Sinhala language. (#2788)

* adding Sinhala language package, stop words, examples and lex_attrs.

* Adding contributor agreement

* Updating contributor agreement

* Also include lowercase norm exceptions

* Fix error (#2802)

* Fix error
ValueError: cannot resize an array that references or is referenced
by another array in this way.  Use the resize function

* added spaCy Contributor Agreement

* Add charlax's contributor agreement (#2805)

* agreement of contributor, may I introduce a tiny pl languge contribution (#2799)

* Contributors agreement

* Contributors agreement

* Contributors agreement

* Add jupyter=True to displacy.render in documentation (#2806)

* Revert "Also include lowercase norm exceptions"

This reverts commit 70f4e8adf3.

* Remove deprecated encoding argument to msgpack

* Set up dependency tree pattern matching skeleton (#2732)

* Fix bug when too many entity types. Fixes #2800

* Fix Python 2 test failure

* Require older msgpack-numpy

* Restore encoding arg on msgpack-numpy

* Try to fix version pin for msgpack-numpy

* Update Portuguese Language (#2790)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Portuguese - Add/remove stopwords, fix tokenizer, add currency symbols

* Extended punctuation and norm_exceptions in the Portuguese language

* Correct error in spacy universe docs concerning spacy-lookup (#2814)

* Update Keras Example for (Parikh et al, 2016) implementation  (#2803)

* bug fixes in keras example

* created contributor agreement

* baseline for Parikh model

* initial version of parikh 2016 implemented

* tested asymmetric models

* fixed grevious error in normalization

* use standard SNLI test file

* begin to rework parikh example

* initial version of running example

* start to document the new version

* start to document the new version

* Update Decompositional Attention.ipynb

* fixed calls to similarity

* updated the README

* import sys package duh

* simplified indexing on mapping word to IDs

* stupid python indent error

* added code from https://github.com/tensorflow/tensorflow/issues/3388 for tf bug workaround

* Fix typo (closes #2815) [ci skip]

* Update regex version dependency

* Set version to 2.0.13.dev3

* Skip seemingly problematic test

* Remove problematic test

* Try previous version of regex

* Revert "Remove problematic test"

This reverts commit bdebbef455.

* Unskip test

* Try older version of regex

* 💫 Update training examples and use minibatching (#2830)

<!--- Provide a general summary of your changes in the title. -->

## Description
Update the training examples in `/examples/training` to show usage of spaCy's `minibatch` and `compounding` helpers ([see here](https://spacy.io/usage/training#tips-batch-size) for details). The lack of batching in the examples has caused some confusion in the past, especially for beginners who would copy-paste the examples, update them with large training sets and experienced slow and unsatisfying results.

### Types of change
enhancements

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Visual C++ link updated (#2842) (closes #2841) [ci skip]

* New landing page

* Add contribution agreement

* Correcting lang/ru/examples.py (#2845)

* Correct some grammatical inaccuracies in lang\ru\examples.py; filled Contributor Agreement

* Correct some grammatical inaccuracies in lang\ru\examples.py

* Move contributor agreement to separate file

* Set version to 2.0.13.dev4

* Add Persian(Farsi) language support (#2797)

* Also include lowercase norm exceptions

* Remove in favour of https://github.com/explosion/spaCy/graphs/contributors

* Rule-based French Lemmatizer (#2818)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

Add a rule-based French Lemmatizer following the english one and the excellent PR for [greek language optimizations](https://github.com/explosion/spaCy/pull/2558) to adapt the Lemmatizer class.

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

- Lemma dictionary used can be found [here](http://infolingu.univ-mlv.fr/DonneesLinguistiques/Dictionnaires/telechargement.html), I used the XML version.
- Add several files containing exhaustive list of words for each part of speech 
- Add some lemma rules
- Add POS that are not checked in the standard Lemmatizer, i.e PRON, DET, ADV and AUX
- Modify the Lemmatizer class to check in lookup table as a last resort if POS not mentionned
- Modify the lemmatize function to check in lookup table as a last resort
- Init files are updated so the model can support all the functionalities mentioned above
- Add words to tokenizer_exceptions_list.py in respect to regex used in tokenizer_exceptions.py

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [X] I have submitted the spaCy Contributor Agreement.
- [X] I ran the tests, and all new and existing tests passed.
- [X] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Set version to 2.0.13

* Fix formatting and consistency

* Update docs for new version [ci skip]

* Increment version [ci skip]

* Add info on wheels [ci skip]

* Adding "This is a sentence" example to Sinhala (#2846)

* Add wheels badge

* Update badge [ci skip]

* Update README.rst [ci skip]

* Update murmurhash pin

* Increment version to 2.0.14.dev0

* Update GPU docs for v2.0.14

* Add wheel to setup_requires

* Import prefer_gpu and require_gpu functions from Thinc

* Add tests for prefer_gpu() and require_gpu()

* Update requirements and setup.py

* Workaround bug in thinc require_gpu

* Set version to v2.0.14

* Update push-tag script

* Unhack prefer_gpu

* Require thinc 6.10.6

* Update prefer_gpu and require_gpu docs [ci skip]

* Fix specifiers for GPU

* Set version to 2.0.14.dev1

* Set version to 2.0.14

* Update Thinc version pin

* Increment version

* Fix msgpack-numpy version pin

* Increment version

* Update version to 2.0.16

* Update version [ci skip]

* Redundant ')' in the Stop words' example (#2856)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [ ] I have submitted the spaCy Contributor Agreement.
- [ ] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Documentation improvement regarding joblib and SO (#2867)

Some documentation improvements

## Description
1. Fixed the dead URL to joblib
2. Fixed Stack Overflow brand name (with space)

### Types of change
Documentation

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* raise error when setting overlapping entities as doc.ents (#2880)

* Fix out-of-bounds access in NER training

The helper method state.B(1) gets the index of the first token of the
buffer, or -1 if no such token exists. Normally this is safe because we
pass this to functions like state.safe_get(), which returns an empty
token. Here we used it directly as an array index, which is not okay!

This error may have been the cause of out-of-bounds access errors during
training. Similar errors may still be around, so much be hunted down.
Hunting this one down took a long time...I printed out values across
training runs and diffed, looking for points of divergence between
runs, when no randomness should be allowed.

* Change PyThaiNLP Url (#2876)

* Fix missing comma

* Add example showing a fix-up rule for space entities

* Set version to 2.0.17.dev0

* Update regex version

* Revert "Update regex version"

This reverts commit 62358dd867.

* Try setting older regex version, to align with conda

* Set version to 2.0.17

* Add spacy-js to universe [ci-skip]

* Add spacy-raspberry to universe (closes #2889)

* Add script to validate universe json [ci skip]

* Removed space in docs + added contributor indo (#2909)

* - removed unneeded space in documentation

* - added contributor info

* Allow input text of length up to max_length, inclusive (#2922)

* Include universe spec for spacy-wordnet component (#2919)

* feat: include universe spec for spacy-wordnet component

* chore: include spaCy contributor agreement

* Minor formatting changes [ci skip]

* Fix image [ci skip]

Twitter URL doesn't work on live site

* Check if the word is in one of the regular lists specific to each POS (#2886)

* 💫 Create random IDs for SVGs to prevent ID clashes (#2927)

Resolves #2924.

## Description
Fixes problem where multiple visualizations in Jupyter notebooks would have clashing arc IDs, resulting in weirdly positioned arc labels. Generating a random ID prefix so even identical parses won't receive the same IDs for consistency (even if effect of ID clash isn't noticable here.)

### Types of change
bug fix

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix typo [ci skip]

* fixes symbolic link on py3 and windows (#2949)

* fixes symbolic link on py3 and windows
during setup of spacy using command
python -m spacy link en_core_web_sm en
closes #2948

* Update spacy/compat.py

Co-Authored-By: cicorias <cicorias@users.noreply.github.com>

* Fix formatting

* Update universe [ci skip]

* Catalan Language Support (#2940)

* Catalan language Support

* Ddding Catalan to documentation

* Sort languages alphabetically [ci skip]

* Update tests for pytest 4.x (#2965)

<!--- Provide a general summary of your changes in the title. -->

## Description
- [x] Replace marks in params for pytest 4.0 compat ([see here](https://docs.pytest.org/en/latest/deprecations.html#marks-in-pytest-mark-parametrize))
- [x] Un-xfail passing tests (some fixes in a recent update resolved a bunch of issues, but tests were apparently never updated here)

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix regex pin to harmonize with conda (#2964)

* Update README.rst

* Fix bug where Vocab.prune_vector did not use 'batch_size' (#2977)

Fixes #2976

* Fix typo

* Fix typo

* Remove duplicate file

* Require thinc 7.0.0.dev2

Fixes bug in gpu_ops that would use cupy instead of numpy on CPU

* Add missing import

* Fix error IDs

* Fix tests
2018-11-29 16:30:29 +01:00
Ines Montani
b6e991440c 💫 Tidy up and auto-format tests (#2967)
* Auto-format tests with black

* Add flake8 config

* Tidy up and remove unused imports

* Fix redefinitions of test functions

* Replace orths_and_spaces with words and spaces

* Fix compatibility with pytest 4.0

* xfail test for now

Test was previously overwritten by following test due to naming conflict, so failure wasn't reported

* Unfail passing test

* Only use fixture via arguments

Fixes pytest 4.0 compatibility
2018-11-27 01:09:36 +01:00
Grivaz
aeba99ab0d Introduces a bulk merge function, in order to solve issue #653 (#2696)
* Fix comment

* Introduce bulk merge to increase performance on many span merges

* Sign contributor agreement

* Implement pull request suggestions
2018-09-10 16:41:42 +02:00
Ines Montani
75f3234404
💫 Refactor test suite (#2568)
## Description

Related issues: #2379 (should be fixed by separating model tests)

* **total execution time down from > 300 seconds to under 60 seconds** 🎉
* removed all model-specific tests that could only really be run manually anyway – those will now live in a separate test suite in the [`spacy-models`](https://github.com/explosion/spacy-models) repository and are already integrated into our new model training infrastructure
* changed all relative imports to absolute imports to prepare for moving the test suite from `/spacy/tests` to `/tests` (it'll now always test against the installed version)
* merged old regression tests into collections, e.g. `test_issue1001-1500.py` (about 90% of the regression tests are very short anyways)
* tidied up and rewrote existing tests wherever possible

### Todo

- [ ] move tests to `/tests` and adjust CI commands accordingly
- [x] move model test suite from internal repo to `spacy-models`
- [x] ~~investigate why `pipeline/test_textcat.py` is flakey~~
- [x] review old regression tests (leftover files) and see if they can be merged, simplified or deleted
- [ ] update documentation on how to run tests


### Types of change
enhancement, tests

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-07-24 23:38:44 +02:00
Ines Montani
cae4457c38 💫 Add .similarity warnings for no vectors and option to exclude warnings (#2197)
* Add logic to filter out warning IDs via environment variable

Usage: SPACY_WARNING_EXCLUDE=W001,W007

* Add warnings for empty vectors

* Add warning if no word vectors are used in .similarity methods

For example, if only tensors are available in small models – should hopefully clear up some confusion around this

* Capture warnings in tests

* Rename SPACY_WARNING_EXCLUDE to SPACY_WARNING_IGNORE
2018-05-21 01:22:38 +02:00
ines
b59e3b157f Don't require attrs argument in Doc.retokenize and allow both ints and unicode (resolves #2304) 2018-05-20 15:15:37 +02:00
Mr Roboto
6f5ccda19c Addresses Issue #2228 - Deserialization fails when using tensor=False or sentiment=False (#2230)
* Fixes issue #2228

* Adds a new contributor
2018-05-01 13:40:22 +02:00
Matthew Honnibal
ccb51a9f36 Make .similarity() return 1.0 if all orth attrs match 2018-01-15 16:29:48 +01:00
ines
5914faafbb Fix .merge tests to not use deprecated API 2017-11-01 16:49:11 +01:00
Matthew Honnibal
77d8f5de9a Revise and simplify Vectors class 2017-10-31 18:25:08 +01:00
Explosion Bot
72aea8f105 Update vectors.add() to allow setting keys to rows 2017-10-30 10:03:08 +01:00
Matthew Honnibal
908809d488 Update tests 2017-10-24 17:05:15 +02:00
Ramanan Balakrishnan
d2fe56a577
Add LCA matrix for spans and docs 2017-10-20 23:58:00 +05:30
Matthew Honnibal
6937e311a4 Update doc tests 2017-05-30 23:34:23 +02:00
Matthew Honnibal
84e66ca6d4 WIP on stringstore change. 27 failures 2017-05-28 14:06:40 +02:00
ines
8c2a0c026d Fix parse_tree test 2017-05-13 12:32:45 +02:00
Matthew Honnibal
b2540d2379 Merge Kengz's tree_print patch 2017-05-13 03:18:49 +02:00
ines
376c5813a7 Remove print statements from test 2017-02-24 18:26:32 +01:00
Ines Montani
a89e269a5a Fix test formatting and consistency 2017-01-14 13:41:19 +01:00
Ines Montani
33800c9367 Rename "tokens" tests to "doc" 2017-01-11 18:59:01 +01:00