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7254 Commits

Author SHA1 Message Date
Matthew Honnibal
1827f22f56 Set version to v3.0.0a3 2020-07-09 19:38:04 +02:00
Matthw Honnibal
7010f1a2be Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-09 19:34:11 +02:00
Matthw Honnibal
77af0a6bb4 Offer option of padding-sensitive batching 2020-07-09 14:50:20 +02:00
Matthw Honnibal
3a7f275c02 Add extra batch util 2020-07-09 14:38:41 +02:00
Matthw Honnibal
eb0798c421 Add __len__ method for Example 2020-07-09 14:38:26 +02:00
Ines Montani
8f9552d9e7
Refactor project CLI (#5732) 
* Make project command a submodule

* Update with WIP

* Add helper for joining commands

* Update docstrins, formatting and types

* Update assets and add support for copying local files

* Fix type

* Update success messages
 2020-07-09 01:42:51 +02:00
Adriane Boyd
ad15499b3b
Fix get_loss for values outside of labels in senter (#5730) 
* Fix get_loss for None alignments in senter

When converting the `sent_start` values back to `SentenceRecognizer`
labels, handle `None` alignments.

* Handle SENT_START as -1

Handle SENT_START as -1 (or -1 converted to uint64) by treating any
values other than 1 the same as 0 in `SentenceRecognizer.get_loss`.
 2020-07-09 01:41:58 +02:00
Matthw Honnibal
1b20ffac38 batch_by_words by default 2020-07-08 21:37:06 +02:00
Matthw Honnibal
93e50da46a Remove auto 'set_annotation' in training to address GPU memory 2020-07-08 21:36:51 +02:00
Matthw Honnibal
fb8a5967c1 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-08 15:27:50 +02:00
Ines Montani
0a3d41bb1d
Deprecat model shortcuts and simplify download (#5722) 2020-07-08 14:00:07 +02:00
Adriane Boyd
c9f0f75778
Update get_loss for senter and morphologizer (#5724) 
* Update get_loss for senter

Update `SentenceRecognizer.get_loss` to keep it similar to `Tagger`.

* Update get_loss for morphologizer

Update `Morphologizer.get_loss` to keep it similar to `Tagger`.
 2020-07-08 13:59:28 +02:00
Matthw Honnibal
ca989f4cc4 Improve cutting logic in parser 2020-07-08 11:27:54 +02:00
Matthw Honnibal
42e1109def Support option to not batch by number of words 2020-07-08 11:26:54 +02:00
Ines Montani
8cb7f9ccff
Improve assets and DVC handling (#5719) 
* Improve assets and DVC handling

* Remove outdated comment [ci skip]
 2020-07-07 20:51:50 +02:00
Sofie Van Landeghem
a39a110c4e
Few more Example unit tests (#5720) 
* small fixes in Example, UX

* add gold tests for aligned_spans and get_aligned_parse

* sentencizer unnecessary
 2020-07-07 18:46:00 +02:00
Matthw Honnibal
433dc3c9c9 Simplify PrecomputableAffine slightly 2020-07-07 17:22:47 +02:00
Matthw Honnibal
a4164f67ca Don't normalize gradients 2020-07-07 17:21:58 +02:00
Matthw Honnibal
8177f25b6c Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-07 17:21:10 +02:00
Ines Montani
fa00a85828
Merge pull request #5715 from explosion/chore/tidy-regression-tests 2020-07-07 11:22:07 +02:00
Matthw Honnibal
d1fd3438c3 Add dropout to parser hidden layer 2020-07-07 01:38:15 +02:00
Matthw Honnibal
f25761e513 Dont randomize cuts in parser 2020-07-06 17:51:25 +02:00
Matthw Honnibal
709fc5e4ad Clarify dropout and seed in Tok2Vec 2020-07-06 17:50:21 +02:00
Matthew Honnibal
19d42f42de Set version to v3.0.0a2 2020-07-06 17:43:12 +02:00
Matthew Honnibal
cc477be952
Improve gold-standard alignment (#5711) 
* Remove previous alignment

* Implement better alignment, using ragged data structure

* Use pytokenizations for alignment

* Fixes

* Fixes

* Fix overlapping entities in alignment

* Fix align split_sents

* Update test

* Commit align.py

* Try to appease setuptools

* Fix flake8

* use realistic entities for testing

* Update tests for better alignment

* Improve alignment heuristic

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
 2020-07-06 17:39:31 +02:00
Ines Montani
b6deef80f8 Fix class to pickling works as expected 2020-07-06 16:43:45 +02:00
Ines Montani
fa261d09e8 Add alternative CLI option 2020-07-06 15:57:38 +02:00
Adriane Boyd
c67fc6aa5b
Make docs_to_json backwards-compatible with v2 (#5714) 
* In `spacy convert -t json` output the JSON docs wrapped in a list

* Add back token-level `ner` alongside the doc-level `entities`
 2020-07-06 14:15:00 +02:00
Ines Montani
5b7b2a498d Tidy up and merge regression tests 2020-07-06 14:05:59 +02:00
Ines Montani
412dbb1f38
Remove dead and/or deprecated code (#5710) 
* Remove dead and/or deprecated code

* Remove n_threads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
 2020-07-06 13:06:25 +02:00
Sofie Van Landeghem
fcbf899b08
Feature/example only (#5707) 
* remove _convert_examples

* fix test_gold, raise TypeError if tuples are used instead of Example's

* throwing proper errors when the wrong type of objects are passed

* fix deprectated format in tests

* fix deprectated format in parser tests

* fix tests for NEL, morph, senter, tagger, textcat

* update regression tests with new Example format

* use make_doc

* more fixes to nlp.update calls

* few more small fixes for rehearse and evaluate

* only import ml_datasets if really necessary
 2020-07-06 13:02:36 +02:00
Matthw Honnibal
3f6f087113 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-04 23:52:12 +02:00
Matthw Honnibal
5642507823 Fix has_unknown_spaces in Doc.copy 2020-07-04 23:52:02 +02:00
Matthw Honnibal
8870a6ded7 Specify seeds in HashEmbed 2020-07-04 23:51:49 +02:00
Ines Montani
37c3bb35e2 Auto-format 2020-07-04 16:25:34 +02:00
Ines Montani
abd173937f Auto-format and update URL 2020-07-04 14:23:44 +02:00
Ines Montani
99aff16d60 Make argument shortcut consistent 2020-07-04 14:23:32 +02:00
Matthew Honnibal
2bd1bf81f1
Refactor pretrain and support character-based objective for v3 (#5706) 
* Start adding character-based stuff

* Start adding character-based objective

* Start adding character-based stuff

* Start adding character-based objective

* Remove outdated comment

* Update pretraining models

* Add/fix character-based multi-task models

* Refactor pretrain and support character-based objective

* Update pretrain config

* Remove unused

* Fix flake8 errors

* Clean up imports

* Format

* Format

* Update Thinc version

* Raise error if vectors objective but no vectors
 2020-07-03 17:57:28 +02:00
Ines Montani
84fb3a3fb3 Auto-format and fix tuple 2020-07-03 15:20:10 +02:00
Matthew Honnibal
e1b3e8ee11 Set version to v3.0.0a1 2020-07-03 13:21:08 +02:00
Matthew Honnibal
a902b5f217
Record whether Doc objects are built from known spacing (#5697) 
* Tell convert CLI to store user data for Doc

* Remove assert

* Add has_unknwon_spaces flag on Doc

* Do not tokenize docs with unknown spaces in Corpus

* Handle conversion of unknown spaces in Example

* Fixes

* Fixes

* Draft has_known_spaces support in DocBin

* Add test for serialize has_unknown_spaces

* Fix DocBin serialization when has_unknown_spaces

* Use serialization in test
 2020-07-03 12:58:16 +02:00
Adriane Boyd
abad56db7d
Add conllu2docs converter (#5704) 
Add conllu2docs converter adapted from conllu2json converter
 2020-07-03 12:54:32 +02:00
Jan Jessewitsch
e4dcac4a4b
Merging multiple docs into one (#5032) 
* Add static method to Doc to allow merging of multiple docs.

* Add error description for the error that occurs if docs with different
vocabs (from different languages) are merged in Doc.from_docs().

* Add test for Doc.from_docs() implementation.

* Fix using numpy's concatenate in Doc.from_docs.

* Replace typing's type annotations in from_docs.

* Simply remove type annotations in from_docs.

* Add documentation for Doc.from_docs to api.

* Simplify from_docs, its test and the api doc for codebase consistency.

* Fix merging of Doc objects that end with whitespaces (Achieved by simply not setting the SPACY attribute on whitespace tokens). Remove two unnecessary imports of attributes.

* Add merging of user data from Doc objects in from_docs. Add user data test case to corresponding test. Add applicable warning messages.

* Fix incorrect setting of tokens idx by using concatenated spaces (again). Add test case to corresponding test.

* Add MORPH to attrs

* Update warnings calls

* Remove out-dated error from merge

* Rename space_delimiter to ensure_whitespace

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2020-07-03 11:32:42 +02:00
Sofie Van Landeghem
41b65fd0f8
fix to pretrain script (#5699) 
* fix to pretrain script

* remove unnecessary import
 2020-07-02 21:48:01 +02:00
Adriane Boyd
a723fa02a1
DocBin: add version number, missing attributes and strings (#5685) 
* Add version number to DocBin

Add a version number to DocBin for future use.

* Add POS to all attributes in DocBin

* Add morph string to strings in DocBin

* Update DocBin API

* Add string for ENT_KB_ID in DocBin
 2020-07-02 17:41:50 +02:00
Ines Montani
d36632553a
Merge pull request #5688 from explosion/remove-deprecated 
Remove deprecated methods: Doc.print_tree, Doc.merge, Span.merge
 2020-07-02 15:10:30 +02:00
Ines Montani
8a5b9a6d5f
Merge pull request #5693 from svlandeg/bugfix/nel-v3 2020-07-02 14:45:46 +02:00
Ines Montani
ee8a830248
Merge pull request #5687 from svlandeg/bugfix/init-model 
Fixing init_model
 2020-07-02 14:10:28 +02:00
svlandeg
04ed4d60a8 raise error when links are not aligned to tokens 2020-07-02 13:57:35 +02:00
svlandeg
f503817623 fix parsing entity links in new gold format 2020-07-02 13:48:11 +02:00
Ines Montani
60c2695131 Remove deprecated methods 2020-07-01 22:33:39 +02:00
Ines Montani
fe4cfd0632 Start updating website for v3 [ci skip] 2020-07-01 21:26:39 +02:00
svlandeg
a30bc77415 bugfixing prune_vectors and vectors_loc 2020-07-01 21:00:47 +02:00
Matthw Honnibal
94a0cf46fd Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 18:45:45 +02:00
Matthw Honnibal
6a0a27e5c2 Fix max_steps 2020-07-01 18:08:14 +02:00
Ines Montani
8d90e44d74 Fix title 2020-07-01 15:38:01 +02:00
Ines Montani
8fb574900a Update parent package and version 2020-07-01 15:35:23 +02:00
Matthew Honnibal
0ada186dda Set version to v3.0.0.dev14 2020-07-01 15:31:04 +02:00
Matthw Honnibal
cb51bb637b Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 15:17:27 +02:00
Matthw Honnibal
7734cbc34d Set batch size in begin_training 2020-07-01 15:16:59 +02:00
Matthw Honnibal
1f7709e9a6 Improve max length check in corpus 2020-07-01 15:16:43 +02:00
Matthw Honnibal
2fa56484b2 Fix eval batch size 2020-07-01 15:16:25 +02:00
Matthw Honnibal
c5d12d1a22 Allow batch size to be set for evaluation in spacy train 2020-07-01 15:04:36 +02:00
Matthw Honnibal
f5532757a3 Filter out 0-length examples in Corpus 2020-07-01 15:02:37 +02:00
Ines Montani
bc87ba97e0
Merge pull request #5681 from svlandeg/bugfix/exec-cwd 2020-07-01 14:13:19 +02:00
Matthw Honnibal
52338a07bb Set version to v3.0.0.dev13 2020-07-01 02:49:17 +02:00
Matthw Honnibal
fa6d473390 Fix parser maxout_pieces=1 2020-07-01 02:48:58 +02:00
Matthw Honnibal
35af5819e0 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 01:03:39 +02:00
Matthw Honnibal
0d6edf5397 Clean up debug code in transition_system 2020-07-01 01:03:20 +02:00
Matthw Honnibal
a1b6add4c8 Fix parser gold cutting and gradient normalization 2020-07-01 01:02:58 +02:00
Matthw Honnibal
8c5a88e777 Fix per-epoch shuffling 2020-07-01 01:02:35 +02:00
svlandeg
a7d547c65e small fix 2020-06-30 21:56:17 +02:00
svlandeg
8eca7e995e add try-except to git commands to get an informative warning 2020-06-30 21:53:40 +02:00
Ines Montani
b032943c34 Fix funny printing again 2020-06-30 21:33:41 +02:00
Matthw Honnibal
d525552979 Fix efficiency of parser backprop_nonlinearity 2020-06-30 21:22:54 +02:00
Ines Montani
d64644d9d1 Adjust auto-formatting 2020-06-30 20:36:30 +02:00
Ines Montani
6da3500728 Fix command substitution 2020-06-30 20:35:51 +02:00
svlandeg
e7aff9c5fc bugfix exec usage in dvc.yaml 2020-06-30 18:51:20 +02:00
svlandeg
60f97bc519 add custom warning when run_command fails 2020-06-30 17:28:43 +02:00
svlandeg
39953c7c60 fix print_run_help with new arg order 2020-06-30 17:28:09 +02:00
svlandeg
cd632d8ec2 move folder for exec argument one up 2020-06-30 17:19:36 +02:00
svlandeg
1ae6fa2554 move subcommand one place up as project_dir has default 2020-06-30 16:04:53 +02:00
svlandeg
a46b76f188 use current working dir as default throughout 2020-06-30 15:39:24 +02:00
svlandeg
b228111925 fix funny printing 2020-06-30 14:54:45 +02:00
Ines Montani
8e20505970 Resolve within working_dir context manager 2020-06-30 13:29:45 +02:00
Ines Montani
72175b5c60 Update project command 2020-06-30 13:17:26 +02:00
Ines Montani
c5e31acb06 Make working_dir yield absolute cwd path 2020-06-30 13:17:14 +02:00
Ines Montani
3aca404735 Make run_command take string and list 2020-06-30 13:17:00 +02:00
Ines Montani
7584fdafec Fix typo 2020-06-30 12:59:13 +02:00
svlandeg
140c4896a0 split_command util function 2020-06-30 12:54:15 +02:00
Matthw Honnibal
57e09747dc Improve efficiency of get_oracle_sequences 2020-06-30 11:50:48 +02:00
Matthw Honnibal
233945bfe0 Fix init for padding 2020-06-30 11:50:24 +02:00
svlandeg
d23be563eb remove redundant setting of no_args_is_help 2020-06-30 11:23:35 +02:00
svlandeg
b311ce982f Merge remote-tracking branch 'upstream/develop' into fix/small-edits 
# Conflicts:
#	spacy/cli/project.py
 2020-06-30 11:17:31 +02:00
svlandeg
7e4cbda89a fix project_init for relative path 2020-06-30 11:09:53 +02:00
Matthw Honnibal
85ed5730a2 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-06-30 01:14:16 +02:00
Ines Montani
e8033df81e Also handle python3 and pip3 2020-06-29 20:30:42 +02:00
Ines Montani
c874dde66c Show help on "spacy project" 2020-06-29 20:11:34 +02:00
Ines Montani
1d2c646e57 Fix init and remove .dvc/plots 2020-06-29 20:07:21 +02:00
Matthw Honnibal
5bed6fc431 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-06-29 19:55:24 +02:00