Commit Graph

274 Commits

Author SHA1 Message Date
Sofie Van Landeghem
f4f49f5877
update blis (#6198)
* allow higher blis version

* fix typo

* bump to 3.0.0a34

* fix pins in other files
2020-10-05 14:58:56 +02:00
Ines Montani
4b15ff7504 Increment version [ci skip] 2020-10-04 22:47:04 +02:00
Matthew Honnibal
70b9de8e58 Set version to v3.0.0a32 2020-10-03 19:26:52 +02:00
Ines Montani
d6c967401f Increment version 2020-10-03 17:20:47 +02:00
Matthew Honnibal
7b127f307e Set version to v3.0.0a30 2020-10-03 16:06:42 +02:00
Ines Montani
568768643e Increment version [ci skip] 2020-10-02 01:50:13 +02:00
Ines Montani
da30701cd1 Increment version [ci skip] 2020-10-01 21:58:11 +02:00
Ines Montani
1700c8541e Increment version [ci skip] 2020-10-01 17:57:16 +02:00
Sofie Van Landeghem
009ba14aaf
Fix pretraining in train script (#6143)
* update pretraining API in train CLI

* bump thinc to 8.0.0a35

* bump to 3.0.0a26

* doc fixes

* small doc fix
2020-09-25 15:47:10 +02:00
Ines Montani
20b89a9717 Increment version [ci skip] 2020-09-24 16:57:02 +02:00
Ines Montani
3f751e68f5 Increment version [ci skip] 2020-09-24 14:45:41 +02:00
Ines Montani
3f77eb749c Increment version [ci skip] 2020-09-23 19:50:15 +02:00
Ines Montani
3c3863654e Increment version [ci skip] 2020-09-23 16:54:43 +02:00
Ines Montani
db7126ead9 Increment version 2020-09-22 10:31:26 +02:00
Ines Montani
b3327c1e45 Increment version [ci skip] 2020-09-21 16:04:30 +02:00
Matthew Honnibal
8303d101a5 Set version to v3.0.0a19 2020-09-17 00:18:49 +02:00
Matthew Honnibal
475323cd36 Set version to v3.0.0a18 2020-09-14 22:05:43 +02:00
Matthew Honnibal
fdd2340f6c Set version to v3.0.0a17 2020-09-13 23:52:03 +02:00
Ines Montani
908f3a4494 Update default projects repo [ci skip] 2020-09-10 11:42:14 +02:00
Sofie Van Landeghem
8e7557656f
Renaming gold & annotation_setter (#6042)
* version bump to 3.0.0a16

* rename "gold" folder to "training"

* rename 'annotation_setter' to 'set_extra_annotations'

* formatting
2020-09-09 10:31:03 +02:00
Matthew Honnibal
5d09e3e154 Set version to v3.0.0a15 2020-09-08 15:25:10 +02:00
Matthew Honnibal
12e1279f6b Set version to v3.0.0a14 2020-09-05 04:13:53 +02:00
Matthew Honnibal
9341cbc013 Set version to v3.0.0a13 2020-08-30 23:10:43 +02:00
Matthew Honnibal
6547472347 Set version to v3.0.0a12 2020-08-26 04:02:34 +02:00
Matthew Honnibal
8d6e1ce306 Update v3.0.0a11 2020-08-25 00:32:08 +02:00
Matthew Honnibal
001546c19e Set version to v3.0.0a10 2020-08-23 21:15:38 +02:00
Matthew Honnibal
e559867605
Allow spacy project to push and pull to/from remote storage (#5949)
* Add utils for working with remote storage

* WIP add remote_cache for project

* WIP add push and pull commands

* Use pathy in remote_cache

* Updarte util

* Update remote_cache

* Update util

* Update project assets

* Update pull script

* Update push script

* Fix type annotation in util

* Work on remote storage

* Remove site and env hash

* Fix imports

* Fix type annotation

* Require pathy

* Require pathy

* Fix import

* Add a util to handle project variable substitution

* Import push and pull commands

* Fix pull command

* Fix push command

* Fix tarfile in remote_storage

* Improve printing

* Fiddle with status messages

* Set version to v3.0.0a9

* Draft docs for spacy project remote storages

* Update docs [ci skip]

* Use Thinc config to simplify and unify template variables

* Auto-format

* Don't import Pathy globally for now

Causes slow and annoying Google Cloud warning

* Tidy up test

* Tidy up and update tests

* Update to latest Thinc

* Update docs

* variables -> vars

* Update docs [ci skip]

* Update docs [ci skip]

Co-authored-by: Ines Montani <ines@ines.io>
2020-08-23 18:32:09 +02:00
Matthew Honnibal
c0f6e77a41 Set version to v3.0.0a8 2020-08-18 23:29:00 +02:00
Matthew Honnibal
a95a36ce2a Set version to v3.0.0a7 2020-08-16 15:51:05 +02:00
Matthew Honnibal
0fc13b2f14 Set version to v3.0.0a6 2020-08-09 21:53:32 +02:00
Matthew Honnibal
71242327b2 Set version to v3.0.0a5 2020-07-25 14:06:01 +02:00
Matthew Honnibal
743f7fb73a Set version to v3.0.0a4 2020-07-10 22:40:12 +02:00
Matthew Honnibal
1827f22f56 Set version to v3.0.0a3 2020-07-09 19:38:04 +02:00
Ines Montani
0a3d41bb1d
Deprecat model shortcuts and simplify download (#5722) 2020-07-08 14:00:07 +02:00
Matthew Honnibal
19d42f42de Set version to v3.0.0a2 2020-07-06 17:43:12 +02:00
Matthew Honnibal
e1b3e8ee11 Set version to v3.0.0a1 2020-07-03 13:21:08 +02:00
Ines Montani
8d90e44d74 Fix title 2020-07-01 15:38:01 +02:00
Ines Montani
8fb574900a Update parent package and version 2020-07-01 15:35:23 +02:00
Matthew Honnibal
0ada186dda Set version to v3.0.0.dev14 2020-07-01 15:31:04 +02:00
Matthw Honnibal
52338a07bb Set version to v3.0.0.dev13 2020-07-01 02:49:17 +02:00
Matthew Honnibal
67928036f2 Set version to v3.0.0.dev12 2020-06-29 14:45:43 +02:00
Matthew Honnibal
2d9604d39c Set version to v3.0.0.dev11 2020-06-29 13:56:46 +02:00
Matthew Honnibal
e14bf9decb Set version to v3.0.0.dev9 2020-06-28 23:58:10 +02:00
Matthew Honnibal
58c8f731bd Set version to v3.0.0.dev9 2020-06-28 23:53:14 +02:00
Matthew Honnibal
8c29268749
Improve spacy.gold (no GoldParse, no json format!) (#5555)
* Update errors

* Remove beam for now (maybe)

Remove beam_utils

Update setup.py

Remove beam

* Remove GoldParse

WIP on removing goldparse

Get ArcEager compiling after GoldParse excise

Update setup.py

Get spacy.syntax compiling after removing GoldParse

Rename NewExample -> Example and clean up

Clean html files

Start updating tests

Update Morphologizer

* fix error numbers

* fix merge conflict

* informative error when calling to_array with wrong field

* fix error catching

* fixing language and scoring tests

* start testing get_aligned

* additional tests for new get_aligned function

* Draft create_gold_state for arc_eager oracle

* Fix import

* Fix import

* Remove TokenAnnotation code from nonproj

* fixing NER one-to-many alignment

* Fix many-to-one IOB codes

* fix test for misaligned

* attempt to fix cases with weird spaces

* fix spaces

* test_gold_biluo_different_tokenization works

* allow None as BILUO annotation

* fixed some tests + WIP roundtrip unit test

* add spaces to json output format

* minibatch utiltiy can deal with strings, docs or examples

* fix augment (needs further testing)

* various fixes in scripts - needs to be further tested

* fix test_cli

* cleanup

* correct silly typo

* add support for MORPH in to/from_array, fix morphologizer overfitting test

* fix tagger

* fix entity linker

* ensure test keeps working with non-linked entities

* pipe() takes docs, not examples

* small bug fix

* textcat bugfix

* throw informative error when running the components with the wrong type of objects

* fix parser tests to work with example (most still failing)

* fix BiluoPushDown parsing entities

* small fixes

* bugfix tok2vec

* fix renames and simple_ner labels

* various small fixes

* prevent writing dummy values like deps because that could interfer with sent_start values

* fix the fix

* implement split_sent with aligned SENT_START attribute

* test for split sentences with various alignment issues, works

* Return ArcEagerGoldParse from ArcEager

* Update parser and NER gold stuff

* Draft new GoldCorpus class

* add links to to_dict

* clean up

* fix test checking for variants

* Fix oracles

* Start updating converters

* Move converters under spacy.gold

* Move things around

* Fix naming

* Fix name

* Update converter to produce DocBin

* Update converters

* Allow DocBin to take list of Doc objects.

* Make spacy convert output docbin

* Fix import

* Fix docbin

* Fix compile in ArcEager

* Fix import

* Serialize all attrs by default

* Update converter

* Remove jsonl converter

* Add json2docs converter

* Draft Corpus class for DocBin

* Work on train script

* Update Corpus

* Update DocBin

* Allocate Doc before starting to add words

* Make doc.from_array several times faster

* Update train.py

* Fix Corpus

* Fix parser model

* Start debugging arc_eager oracle

* Update header

* Fix parser declaration

* Xfail some tests

* Skip tests that cause crashes

* Skip test causing segfault

* Remove GoldCorpus

* Update imports

* Update after removing GoldCorpus

* Fix module name of corpus

* Fix mimport

* Work on parser oracle

* Update arc_eager oracle

* Restore ArcEager.get_cost function

* Update transition system

* Update test_arc_eager_oracle

* Remove beam test

* Update test

* Unskip

* Unskip tests

* add links to to_dict

* clean up

* fix test checking for variants

* Allow DocBin to take list of Doc objects.

* Fix compile in ArcEager

* Serialize all attrs by default

Move converters under spacy.gold

Move things around

Fix naming

Fix name

Update converter to produce DocBin

Update converters

Make spacy convert output docbin

Fix import

Fix docbin

Fix import

Update converter

Remove jsonl converter

Add json2docs converter

* Allocate Doc before starting to add words

* Make doc.from_array several times faster

* Start updating converters

* Work on train script

* Draft Corpus class for DocBin

Update Corpus

Fix Corpus

* Update DocBin

Add missing strings when serializing

* Update train.py

* Fix parser model

* Start debugging arc_eager oracle

* Update header

* Fix parser declaration

* Xfail some tests

Skip tests that cause crashes

Skip test causing segfault

* Remove GoldCorpus

Update imports

Update after removing GoldCorpus

Fix module name of corpus

Fix mimport

* Work on parser oracle

Update arc_eager oracle

Restore ArcEager.get_cost function

Update transition system

* Update tests

Remove beam test

Update test

Unskip

Unskip tests

* Add get_aligned_parse method in Example

Fix Example.get_aligned_parse

* Add kwargs to Corpus.dev_dataset to match train_dataset

* Update nonproj

* Use get_aligned_parse in ArcEager

* Add another arc-eager oracle test

* Remove Example.doc property

Remove Example.doc

Remove Example.doc

Remove Example.doc

Remove Example.doc

* Update ArcEager oracle

Fix Break oracle

* Debugging

* Fix Corpus

* Fix eg.doc

* Format

* small fixes

* limit arg for Corpus

* fix test_roundtrip_docs_to_docbin

* fix test_make_orth_variants

* fix add_label test

* Update tests

* avoid writing temp dir in json2docs, fixing 4402 test

* Update test

* Add missing costs to NER oracle

* Update test

* Work on Example.get_aligned_ner method

* Clean up debugging

* Xfail tests

* Remove prints

* Remove print

* Xfail some tests

* Replace unseen labels for parser

* Update test

* Update test

* Xfail test

* Fix Corpus

* fix imports

* fix docs_to_json

* various small fixes

* cleanup

* Support gold_preproc in Corpus

* Support gold_preproc

* Pass gold_preproc setting into corpus

* Remove debugging

* Fix gold_preproc

* Fix json2docs converter

* Fix convert command

* Fix flake8

* Fix import

* fix output_dir (converted to Path by typer)

* fix var

* bugfix: update states after creating golds to avoid out of bounds indexing

* Improve efficiency of ArEager oracle

* pull merge_sent into iob2docs to avoid Doc creation for each line

* fix asserts

* bugfix excl Span.end in iob2docs

* Support max_length in Corpus

* Fix arc_eager oracle

* Filter out uannotated sentences in NER

* Remove debugging in parser

* Simplify NER alignment

* Fix conversion of NER data

* Fix NER init_gold_batch

* Tweak efficiency of precomputable affine

* Update onto-json default

* Update gold test for NER

* Fix parser test

* Update test

* Add NER data test

* Fix convert for single file

* Fix test

* Hack scorer to avoid evaluating non-nered data

* Fix handling of NER data in Example

* Output unlabelled spans from O biluo tags in iob_utils

* Fix unset variable

* Return kept examples from init_gold_batch

* Return examples from init_gold_batch

* Dont return Example from init_gold_batch

* Set spaces on gold doc after conversion

* Add test

* Fix spaces reading

* Improve NER alignment

* Improve handling of missing values in NER

* Restore the 'cutting' in parser training

* Add assertion

* Print epochs

* Restore random cuts in parser/ner training

* Implement Doc.copy

* Implement Example.copy

* Copy examples at the start of Language.update

* Don't unset example docs

* Tweak parser model slightly

* attempt to fix _guess_spaces

* _add_entities_to_doc first, so that links don't get overwritten

* fixing get_aligned_ner for one-to-many

* fix indexing into x_text

* small fix biluo_tags_from_offsets

* Add onto-ner config

* Simplify NER alignment

* Fix NER scoring for partially annotated documents

* fix indexing into x_text

* fix test_cli failing tests by ignoring spans in doc.ents with empty label

* Fix limit

* Improve NER alignment

* Fix count_train

* Remove print statement

* fix tests, we're not having nothing but None

* fix clumsy fingers

* Fix tests

* Fix doc.ents

* Remove empty docs in Corpus and improve limit

* Update config

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2020-06-26 19:34:12 +02:00
Ines Montani
c12713a8be Port CLI to Typer and add project stubs 2020-06-21 13:44:00 +02:00
Matthw Honnibal
25b51f4fc8 Set version to v3.0.0.dev9 2020-05-21 20:47:52 +02:00
Matthew Honnibal
664a3603b0 Set version to v3.0.0.dev8 2020-05-19 17:15:39 +02:00
svlandeg
6fb6a8518c bump to 3.0.0.dev7 and thinc to 8.0.0a8 2020-05-15 13:25:54 +02:00
Sofie Van Landeghem
b2e93be867
Optimizer defaults (#5244)
* set optimizer defaults to mimic thinc 7 + bump to dev6

* larger error range for senter overfitting test
2020-04-03 13:02:46 +02:00