* Add doc.cats to spacy.gold at the paragraph level
Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.
* `spacy.gold.docs_to_json()` writes `docs.cats`
* `GoldCorpus` reads in cats in each `GoldParse`
* Update instances of gold_tuples to handle cats
Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.
* Add textcat to train CLI
* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
* For binary exclusive classes with provided label: F1 for label
* For 2+ exclusive classes: F1 macro average
* For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI
* Fix handling of unset arguments and config params
Fix handling of unset arguments and model confiug parameters in Scorer
initialization.
* Temporarily add sklearn requirement
* Remove sklearn version number
* Improve Scorer handling of models without textcats
* Fixing Scorer handling of models without textcats
* Update Scorer output for python 2.7
* Modify inf in Scorer for python 2.7
* Auto-format
Also make small adjustments to make auto-formatting with black easier and produce nicer results
* Move error message to Errors
* Update documentation
* Add cats to annotation JSON format [ci skip]
* Fix tpl flag and docs [ci skip]
* Switch to internal roc_auc_score
Switch to internal `roc_auc_score()` adapted from scikit-learn.
* Add AUCROCScore tests and improve errors/warnings
* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors
* Make reduced roc_auc_score functions private
Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.
* Check that data corresponds with multilabel flag
Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.
* Add textcat score to early stopping check
* Add more checks to debug-data for textcat
* Add example training data for textcat
* Add more checks to textcat train CLI
* Check configuration when extending base model
* Fix typos
* Update textcat example data
* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.
Co-authored-by: Ines Montani <ines@ines.io>
* Adjust Table API and add docs
* Add attributes and update description [ci skip]
* Use strings.get_string_id instead of hash_string
* Fix table method calls
* Make orth arg in Lemmatizer.lookup optional
Fall back to string, which is now handled by Table.__contains__ out-of-the-box
* Fix method name
* Auto-format
Most of these characters are for languages / writing systems that aren't
supported by spacy, but I don't think it causes problems to include
them. In the UD evals, Hindi and Urdu improve a lot as expected (from
0-10% to 70-80%) and Persian improves a little (90% to 96%). Tamil
improves in combination with #4288.
The punctuation list is converted to a set internally because of its
increased length.
Sentence final punctuation generated with:
```
unichars -gas '[\p{Sentence_Break=STerm}\p{Sentence_Break=ATerm}]' '\p{Terminal_Punctuation}'
```
See: https://stackoverflow.com/a/9508766/461847Fixes#4269.
Add Kannada, Tamil, and Telugu unicode blocks to uncased character
classes so that period is recognized as a suffix during tokenization.
(I'm sure a few symbols in the code blocks should not be ALPHA, but this
is mainly relevant for suffix detection and seems to be an improvement
in practice.)
Before this patch, half-width spaces between words were simply lost in
Japanese text. This wasn't immediately noticeable because much Japanese
text never uses spaces at all.
* Improve load_language_data helper
* WIP: Add Lookups implementation
* Start moving lemma data over to JSON
* WIP: move data over for more languages
* Convert more languages
* Fix lemmatizer fixtures in tests
* Finish conversion
* Auto-format JSON files
* Fix test for now
* Make sure tables are stored on instance
* Update docstrings
* Update docstrings and errors
* Update test
* Add Lookups.__len__
* Add serialization methods
* Add Lookups.remove_table
* Use msgpack for serialization to disk
* Fix file exists check
* Try using OrderedDict for everything
* Update .flake8 [ci skip]
* Try fixing serialization
* Update test_lookups.py
* Update test_serialize_vocab_strings.py
* Lookups / Tables now work
This implements the stubs in the Lookups/Table classes. Currently this
is in Cython but with no type declarations, so that could be improved.
* Add lookups to setup.py
* Actually add lookups pyx
The previous commit added the old py file...
* Lookups work-in-progress
* Move from pyx back to py
* Add string based lookups, fix serialization
* Update tests, language/lemmatizer to work with string lookups
There are some outstanding issues here:
- a pickling-related test fails due to the bloom filter
- some custom lemmatizers (fr/nl at least) have issues
More generally, there's a question of how to deal with the case where
you have a string but want to use the lookup table. Currently the table
allows access by string or id, but that's getting pretty awkward.
* Change lemmatizer lookup method to pass (orth, string)
* Fix token lookup
* Fix French lookup
* Fix lt lemmatizer test
* Fix Dutch lemmatizer
* Fix lemmatizer lookup test
This was using a normal dict instead of a Table, so checks for the
string instead of an integer key failed.
* Make uk/nl/ru lemmatizer lookup methods consistent
The mentioned tokenizers all have their own implementation of the
`lookup` method, which accesses a `Lookups` table. The way that was
called in `token.pyx` was changed so this should be updated to have the
same arguments as `lookup` in `lemmatizer.py` (specificially (orth/id,
string)).
Prior to this change tests weren't failing, but there would probably be
issues with normal use of a model. More tests should proably be added.
Additionally, the language-specific `lookup` implementations seem like
they might not be needed, since they handle things like lower-casing
that aren't actually language specific.
* Make recently added Greek method compatible
* Remove redundant class/method
Leftovers from a merge not cleaned up adequately.
* Allow copying the user_data with as_doc + unit test
* add option to docs
* add typing
* import fix
* workaround to avoid bool clashing ...
* bint instead of bool
* document token ent_kb_id
* document span kb_id
* update pipeline documentation
* prior and context weights as bool's instead
* entitylinker api documentation
* drop for both models
* finish entitylinker documentation
* small fixes
* documentation for KB
* candidate documentation
* links to api pages in code
* small fix
* frequency examples as counts for consistency
* consistent documentation about tensors returned by predict
* add entity linking to usage 101
* add entity linking infobox and KB section to 101
* entity-linking in linguistic features
* small typo corrections
* training example and docs for entity_linker
* predefined nlp and kb
* revert back to similarity encodings for simplicity (for now)
* set prior probabilities to 0 when excluded
* code clean up
* bugfix: deleting kb ID from tokens when entities were removed
* refactor train el example to use either model or vocab
* pretrain_kb example for example kb generation
* add to training docs for KB + EL example scripts
* small fixes
* error numbering
* ensure the language of vocab and nlp stay consistent across serialization
* equality with =
* avoid conflict in errors file
* add error 151
* final adjustements to the train scripts - consistency
* update of goldparse documentation
* small corrections
* push commit
* typo fix
* add candidate API to kb documentation
* update API sidebar with EntityLinker and KnowledgeBase
* remove EL from 101 docs
* remove entity linker from 101 pipelines / rephrase
* custom el model instead of existing model
* set version to 2.2 for EL functionality
* update documentation for 2 CLI scripts
* Improve load_language_data helper
* WIP: Add Lookups implementation
* Start moving lemma data over to JSON
* WIP: move data over for more languages
* Convert more languages
* Fix lemmatizer fixtures in tests
* Finish conversion
* Auto-format JSON files
* Fix test for now
* Make sure tables are stored on instance
* Update docstrings
* Update docstrings and errors
* Update test
* Add Lookups.__len__
* Add serialization methods
* Add Lookups.remove_table
* Use msgpack for serialization to disk
* Fix file exists check
* Try using OrderedDict for everything
* Update .flake8 [ci skip]
* Try fixing serialization
* Update test_lookups.py
* Update test_serialize_vocab_strings.py
* Fix serialization for lookups
* Fix lookups
* Fix lookups
* Fix lookups
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Give up on serialization test
* Xfail more serialization tests for 3.5
* Fix lookups for 2.7
* Modify retokenizer to use span root attributes
* tag/pos/morph are set to root tag/pos/morph
* lemma and norm are reset and end up as orth (not ideal, but better
than orth of first token)
* Also handle individual merge case
* Add test
* Attempt to handle ent_iob and ent_type in merges
* Fix check for whether B-ENT should become I-ENT
* Move IOB consistency check to after attrs
Move all IOB consistency checks after attrs are set and simplify to
check entire document, modifying I to B at the beginning of the document
or if the entity type of the previous token isn't the same.
* Move IOB consistency check for single merge
Move IOB consistency check after the token array is compressed for the
single merge case.
* Update spacy/tokens/_retokenize.pyx
Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
* Remove single vs. multiple merge distinction
Remove original single-instance `_merge()` and use `_bulk_merge()` (now
renamed `_merge()`) for all merges.
* Add out-of-bound check in previous entity check
* Updates/bugfixes for NER/IOB converters
* Converter formats `ner` and `iob` use autodetect to choose a converter if
possible
* `iob2json` is reverted to handle sentence-per-line data like
`word1|pos1|ent1 word2|pos2|ent2`
* Fix bug in `merge_sentences()` so the second sentence in each batch isn't
skipped
* `conll_ner2json` is made more general so it can handle more formats with
whitespace-separated columns
* Supports all formats where the first column is the token and the final
column is the IOB tag; if present, the second column is the POS tag
* As in CoNLL 2003 NER, blank lines separate sentences, `-DOCSTART- -X- O O`
separates documents
* Add option for segmenting sentences (new flag `-s`)
* Parser-based sentence segmentation with a provided model, otherwise with
sentencizer (new option `-b` to specify model)
* Can group sentences into documents with `n_sents` as long as sentence
segmentation is available
* Only applies automatic segmentation when there are no existing delimiters
in the data
* Provide info about settings applied during conversion with warnings and
suggestions if settings conflict or might not be not optimal.
* Add tests for common formats
* Add '(default)' back to docs for -c auto
* Add document count back to output
* Revert changes to converter output message
* Use explicit tabs in convert CLI test data
* Adjust/add messages for n_sents=1 default
* Add sample NER data to training examples
* Update README
* Add links in docs to example NER data
* Define msg within converters
Filtering by orth and tag, create variants of training docs with
alternate orth variants, e.g., unicode quotes, dashes, and ellipses.
The variants can be single tokens (dashes) or paired tokens (quotes)
with left and right versions.
Currently restricted to only add variants to training documents without
raw text provided, where only gold.words needs to be modified.
* Prevent subtok label if not learning tokens
The parser introduces the subtok label to mark tokens that should be
merged during post-processing. Previously this happened even if we did
not have the --learn-tokens flag set. This patch passes the config
through to the parser, to prevent the problem.
* Make merge_subtokens a parser post-process if learn_subtokens
* Fix train script
* Add test for 3830: subtok problem
* Fix handlign of non-subtok in parser training
* allow phrasematcher to link one match to multiple original patterns
* small fix for defining ent_id in the matcher (anti-ghost prevention)
* cleanup
* formatting
* Improve load_language_data helper
* WIP: Add Lookups implementation
* Start moving lemma data over to JSON
* WIP: move data over for more languages
* Convert more languages
* Fix lemmatizer fixtures in tests
* Finish conversion
* Auto-format JSON files
* Fix test for now
* Make sure tables are stored on instance
