* Improve NER per type scoring
* include all gold labels in per type scoring, not only when recall > 0
* improve efficiency of per type scoring
* Create Scorer tests, initially with NER tests
* move regression test #3968 (per type NER scoring) to Scorer tests
* add new test for per type NER scoring with imperfect P/R/F and per
type P/R/F including a case where R == 0.0
* failing unit test for issue 3962
* attempt to fix Issue #3962
* create artificial unit test example
* using length instead of self.length
* sp
* reformat with black
* find better ancestor within span and use generic 'dep'
* attach to span.root if there is no appropriate ancestor
* comment span text
* clean up ancestor code
* reconstruct dep tree to keep same number of sentences
Expected an `entity_ruler.jsonl` file in the top-level model directory, so the path passed to from_disk by default (model path plus componentn name), but with the suffix ".jsonl".
* Perserve flags in EntityRuler
The EntityRuler (explosion/spaCy#3526) does not preserve
overwrite flags (or `ent_id_sep`) when serialized. This
commit adds support for serialization/deserialization preserving
overwrite and ent_id_sep flags.
* add signed contributor agreement
* flake8 cleanup
mostly blank line issues.
* mark test from the issue as needing a model
The test from the issue needs some language model for serialization
but the test wasn't originally marked correctly.
* Adds `phrase_matcher_attr` to allow args to PhraseMatcher
This is an added arg to pass to the `PhraseMatcher`. For example,
this allows creation of a case insensitive phrase matcher when the
`EntityRuler` is created. References explosion/spaCy#3822
* remove unneeded model loading
The model didn't need to be loaded, and I replaced it with
a change that doesn't require it (using existings fixtures)
* updated docstring for new argument
* updated docs to reflect new argument to the EntityRuler constructor
* change tempdir handling to be compatible with python 2.7
* return conflicted code to entityruler
Some stuff got cut out because of merge conflicts, this
returns that code for the phrase_matcher_attr.
* fixed typo in the code added back after conflicts
* flake8 compliance
When I deconflicted the branch there were some flake8 issues
introduced. This resolves the spacing problems.
* test changes: attempts to fix flaky test in python3.5
These tests seem to be alittle flaky in 3.5 so I changed the check to avoid
the comparisons that seem to be fail sometimes.
* Perserve flags in EntityRuler
The EntityRuler (explosion/spaCy#3526) does not preserve
overwrite flags (or `ent_id_sep`) when serialized. This
commit adds support for serialization/deserialization preserving
overwrite and ent_id_sep flags.
* add signed contributor agreement
* flake8 cleanup
mostly blank line issues.
* mark test from the issue as needing a model
The test from the issue needs some language model for serialization
but the test wasn't originally marked correctly.
* remove unneeded model loading
The model didn't need to be loaded, and I replaced it with
a change that doesn't require it (using existings fixtures)
* change tempdir handling to be compatible with python 2.7
* Adds code to handle item saved before this change.
This code chanes how the save files are handled and how the bytes
are stored as well. This code adds check to dispatch correctly
if it encounters bytes or files saved in the old format (and tests
for those cases).
* use util function for tempdir management
Updated after PR comments: this code now uses the make_tempdir function from util
instead of doing it by hand.
* fix(util): fix decaying function output
* fix(util): better test and adhere to code standards
* fix(util): correct variable name, pytestify test, update website text
spaCy v2.1 switched to the built-in re module, where v2.0 had been using
the third-party regex library. When the tokenizer was deserialized on
Python2.7, the `re.compile()` function was called with expressions that
featured escaped unicode codepoints that were not in Python2.7's unicode
database.
Problems occurred when we had a range between two of these unknown
codepoints, like this:
```
'[\\uAA77-\\uAA79]'
```
On Python2.7, the unknown codepoints are not unescaped correctly,
resulting in arbitrary out-of-range characters being matched by the
expression.
This problem does not occur if we instead have a range between two
unicode literals, rather than the escape sequences. To fix the bug, we
therefore add a new compat function that unescapes unicode sequences
using the `ast.literal_eval()` function. Care is taken to ensure we
do not also escape non-unicode sequences.
Closes#3356.
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
Closes#2203. Closes#3268.
Lemmas set from outside the `Morphology` class were being overwritten. The result was especially confusing when deserialising, as it meant some lemmas could change when storing and retrieving a `Doc` object.
This PR applies two fixes:
1) When we go to set the lemma in the `Morphology` class, first check whether a lemma is already set. If so, don't overwrite.
2) When we load with `doc.from_array()`, take care to apply the `TAG` field first. This allows other fields to overwrite the `TAG` implied properties, if they're provided explicitly (e.g. the `LEMMA`).
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
<!--- Provide a general summary of your changes in the title. -->
## Description
This PR adds the abilility to override custom extension attributes during merging. This will only work for attributes that are writable, i.e. attributes registered with a default value like `default=False` or attribute that have both a getter *and* a setter implemented.
```python
Token.set_extension('is_musician', default=False)
doc = nlp("I like David Bowie.")
with doc.retokenize() as retokenizer:
attrs = {"LEMMA": "David Bowie", "_": {"is_musician": True}}
retokenizer.merge(doc[2:4], attrs=attrs)
assert doc[2].text == "David Bowie"
assert doc[2].lemma_ == "David Bowie"
assert doc[2]._.is_musician
```
### Types of change
enhancement
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* splitting up latin unicode interval
* removing hyphen as infix for French
* adding failing test for issue 1235
* test for issue #3002 which now works
* partial fix for issue #2070
* keep the hyphen as infix for French (as it was)
* restore french expressions with hyphen as infix (as it was)
* added succeeding unit test for Issue #2656
* Fix issue #2822 with custom Italian exception
* Fix issue #2926 by allowing numbers right before infix /
* splitting up latin unicode interval
* removing hyphen as infix for French
* adding failing test for issue 1235
* test for issue #3002 which now works
* partial fix for issue #2070
* keep the hyphen as infix for French (as it was)
* restore french expressions with hyphen as infix (as it was)
* added succeeding unit test for Issue #2656
* Fix issue #2822 with custom Italian exception
* Fix issue #2926 by allowing numbers right before infix /
* remove duplicate
* remove xfail for Issue #2179 fixed by Matt
* adjust documentation and remove reference to regex lib
* Fix matching on extension attrs and predicates
* Fix detection of match_id when using extension attributes. The match
ID is stored as the last entry in the pattern. We were checking for this
with nr_attr == 0, which didn't account for extension attributes.
* Fix handling of predicates. The wrong count was being passed through,
so even patterns that didn't have a predicate were being checked.
* Fix regex pattern
* Fix matcher set value test
