Commit Graph

20 Commits

Author SHA1 Message Date
Matthew Honnibal
333b1a308b
Adapt parser and NER for transformers (#5449)
* Draft layer for BILUO actions

* Fixes to biluo layer

* WIP on BILUO layer

* Add tests for BILUO layer

* Format

* Fix transitions

* Update test

* Link in the simple_ner

* Update BILUO tagger

* Update __init__

* Import simple_ner

* Update test

* Import

* Add files

* Add config

* Fix label passing for BILUO and tagger

* Fix label handling for simple_ner component

* Update simple NER test

* Update config

* Hack train script

* Update BILUO layer

* Fix SimpleNER component

* Update train_from_config

* Add biluo_to_iob helper

* Add IOB layer

* Add IOBTagger model

* Update biluo layer

* Update SimpleNER tagger

* Update BILUO

* Read random seed in train-from-config

* Update use of normal_init

* Fix normalization of gradient in SimpleNER

* Update IOBTagger

* Remove print

* Tweak masking in BILUO

* Add dropout in SimpleNER

* Update thinc

* Tidy up simple_ner

* Fix biluo model

* Unhack train-from-config

* Update setup.cfg and requirements

* Add tb_framework.py for parser model

* Try to avoid memory leak in BILUO

* Move ParserModel into spacy.ml, avoid need for subclass.

* Use updated parser model

* Remove incorrect call to model.initializre in PrecomputableAffine

* Update parser model

* Avoid divide by zero in tagger

* Add extra dropout layer in tagger

* Refine minibatch_by_words function to avoid oom

* Fix parser model after refactor

* Try to avoid div-by-zero in SimpleNER

* Fix infinite loop in minibatch_by_words

* Use SequenceCategoricalCrossentropy in Tagger

* Fix parser model when hidden layer

* Remove extra dropout from tagger

* Add extra nan check in tagger

* Fix thinc version

* Update tests and imports

* Fix test

* Update test

* Update tests

* Fix tests

* Fix test

Co-authored-by: Ines Montani <ines@ines.io>
2020-05-18 22:23:33 +02:00
Ines Montani
46568f40a7 Merge branch 'master' into tmp/sync 2020-03-26 13:38:14 +01:00
Sofie Van Landeghem
c6b12ab02a
Bugfix/get doc (#5049)
* new (broken) unit test

* fixing get_doc method
2020-03-02 11:49:28 +01:00
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Ines Montani
cfffdba7b1 Implement new API for {Phrase}Matcher.add (backwards-compatible) (#4522)
* Implement new API for {Phrase}Matcher.add (backwards-compatible)

* Update docs

* Also update DependencyMatcher.add

* Update internals

* Rewrite tests to use new API

* Add basic check for common mistake

Raise error with suggestion if user likely passed in a pattern instead of a list of patterns

* Fix typo [ci skip]
2019-10-25 22:21:08 +02:00
Ines Montani
3d8fd4b461 Revert #4334 2019-09-29 17:32:12 +02:00
Ines Montani
c9cd516d96 Move tests out of package (#4334)
* Move tests out of package

* Fix typo
2019-09-28 18:05:00 +02:00
Ines Montani
82045aac8a Merge regression tests 2019-07-10 12:49:18 +02:00
Ines Montani
c399162a82 Tidy up 2019-03-11 13:34:14 +01:00
Matthew Honnibal
80b94313b6 💫 Fix interaction of lemmatizer and tokenizer exceptions (#3388)
Closes #2203. Closes #3268.

Lemmas set from outside the `Morphology` class were being overwritten. The result was especially confusing when deserialising, as it meant some lemmas could change when storing and retrieving a `Doc` object.

This PR applies two fixes:

1) When we go to set the lemma in the `Morphology` class, first check whether a lemma is already set. If so, don't overwrite.
2) When we load with `doc.from_array()`, take care to apply the `TAG` field first. This allows other fields to overwrite the `TAG` implied properties, if they're provided explicitly (e.g. the `LEMMA`).

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-11 01:31:21 +01:00
Ines Montani
8f45ff3dc2 Adjust formatting [ci skip] 2019-03-11 00:47:41 +01:00
Sofie
9a478b6db8 Clean up of char classes, few tokenizer fixes and faster default French tokenizer (#3293)
* splitting up latin unicode interval

* removing hyphen as infix for French

* adding failing test for issue 1235

* test for issue #3002 which now works

* partial fix for issue #2070

* keep the hyphen as infix for French (as it was)

* restore french expressions with hyphen as infix (as it was)

* added succeeding unit test for Issue #2656

* Fix issue #2822 with custom Italian exception

* Fix issue #2926 by allowing numbers right before infix /

* splitting up latin unicode interval

* removing hyphen as infix for French

* adding failing test for issue 1235

* test for issue #3002 which now works

* partial fix for issue #2070

* keep the hyphen as infix for French (as it was)

* restore french expressions with hyphen as infix (as it was)

* added succeeding unit test for Issue #2656

* Fix issue #2822 with custom Italian exception

* Fix issue #2926 by allowing numbers right before infix /

* remove duplicate

* remove xfail for Issue #2179 fixed by Matt

* adjust documentation and remove reference to regex lib
2019-02-20 22:10:13 +01:00
Ines Montani
f146121092 💫 Make handling of [Pipe].labels consistent (#3273)
* Make handling of [Pipe].labels consistent

* Un-xfail passing test

* Update spacy/pipeline/pipes.pyx

Co-Authored-By: ines <ines@ines.io>

* Update spacy/pipeline/pipes.pyx

Co-Authored-By: ines <ines@ines.io>

* Update spacy/tests/pipeline/test_pipe_methods.py

Co-Authored-By: ines <ines@ines.io>

* Update spacy/pipeline/pipes.pyx

Co-Authored-By: ines <ines@ines.io>

* Move error message to spacy.errors

* Fix textcat labels and test

* Make EntityRuler.labels return tuple as well
2019-02-15 06:03:19 +11:00
Ines Montani
25602c794c Tidy up and fix small bugs and typos 2019-02-08 14:14:49 +01:00
Ines Montani
323fc26880 Tidy up and format remaining files 2018-11-30 17:43:08 +01:00
Ines Montani
b6e991440c 💫 Tidy up and auto-format tests (#2967)
* Auto-format tests with black

* Add flake8 config

* Tidy up and remove unused imports

* Fix redefinitions of test functions

* Replace orths_and_spaces with words and spaces

* Fix compatibility with pytest 4.0

* xfail test for now

Test was previously overwritten by following test due to naming conflict, so failure wasn't reported

* Unfail passing test

* Only use fixture via arguments

Fixes pytest 4.0 compatibility
2018-11-27 01:09:36 +01:00
Matthew Honnibal
d5a6c63b62 Add regression test for #2482 2018-09-28 15:18:30 +02:00
Ines Montani
5d56eb70d7 Tidy up tests 2018-09-27 16:41:57 +02:00
Ines Montani
75f3234404
💫 Refactor test suite (#2568)
## Description

Related issues: #2379 (should be fixed by separating model tests)

* **total execution time down from > 300 seconds to under 60 seconds** 🎉
* removed all model-specific tests that could only really be run manually anyway – those will now live in a separate test suite in the [`spacy-models`](https://github.com/explosion/spacy-models) repository and are already integrated into our new model training infrastructure
* changed all relative imports to absolute imports to prepare for moving the test suite from `/spacy/tests` to `/tests` (it'll now always test against the installed version)
* merged old regression tests into collections, e.g. `test_issue1001-1500.py` (about 90% of the regression tests are very short anyways)
* tidied up and rewrote existing tests wherever possible

### Todo

- [ ] move tests to `/tests` and adjust CI commands accordingly
- [x] move model test suite from internal repo to `spacy-models`
- [x] ~~investigate why `pipeline/test_textcat.py` is flakey~~
- [x] review old regression tests (leftover files) and see if they can be merged, simplified or deleted
- [ ] update documentation on how to run tests


### Types of change
enhancement, tests

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-07-24 23:38:44 +02:00