* Add doc.cats to spacy.gold at the paragraph level
Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.
* `spacy.gold.docs_to_json()` writes `docs.cats`
* `GoldCorpus` reads in cats in each `GoldParse`
* Update instances of gold_tuples to handle cats
Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.
* Add textcat to train CLI
* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
* For binary exclusive classes with provided label: F1 for label
* For 2+ exclusive classes: F1 macro average
* For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI
* Fix handling of unset arguments and config params
Fix handling of unset arguments and model confiug parameters in Scorer
initialization.
* Temporarily add sklearn requirement
* Remove sklearn version number
* Improve Scorer handling of models without textcats
* Fixing Scorer handling of models without textcats
* Update Scorer output for python 2.7
* Modify inf in Scorer for python 2.7
* Auto-format
Also make small adjustments to make auto-formatting with black easier and produce nicer results
* Move error message to Errors
* Update documentation
* Add cats to annotation JSON format [ci skip]
* Fix tpl flag and docs [ci skip]
* Switch to internal roc_auc_score
Switch to internal `roc_auc_score()` adapted from scikit-learn.
* Add AUCROCScore tests and improve errors/warnings
* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors
* Make reduced roc_auc_score functions private
Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.
* Check that data corresponds with multilabel flag
Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.
* Add textcat score to early stopping check
* Add more checks to debug-data for textcat
* Add example training data for textcat
* Add more checks to textcat train CLI
* Check configuration when extending base model
* Fix typos
* Update textcat example data
* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.
Co-authored-by: Ines Montani <ines@ines.io>
* Add early stopping
* Add return_score option to evaluate
* Fix missing str to path conversion
* Fix import + old python compatibility
* Fix bad beam_width setting during cpu evaluation in spacy train with gpu option turned on
* Add todo
* Auto-format
* Update wasabi pin
* Format training results with wasabi
* Remove loading animation from model saving
Currently behaves weirdly
* Inline messages
* Remove unnecessary path2str
Already taken care of by printer
* Inline messages in CLI
* Remove unused function
* Move loading indicator into loading function
* Check for invalid whitespace entities
* Support nowrap setting in util.prints
* Tidy up and fix whitespace
* Simplify script and use read_jsonl helper
* Add JSON schemas (see #2928)
* Deprecate Doc.print_tree
Will be replaced with Doc.to_json, which will produce a unified format
* Add Doc.to_json() method (see #2928)
Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.
* Remove outdated test
* Add write_json and write_jsonl helpers
* WIP: Update spacy train
* Tidy up spacy train
* WIP: Use wasabi for formatting
* Add GoldParse helpers for JSON format
* WIP: add debug-data command
* Fix typo
* Add missing import
* Update wasabi pin
* Add missing import
* 💫 Refactor CLI (#2943)
To be merged into #2932.
## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)
### Types of change
enhancement
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Update wasabi pin
* Delete old test
* Update errors
* Fix typo
* Tidy up and format remaining code
* Fix formatting
* Improve formatting of messages
* Auto-format remaining code
* Add tok2vec stuff to spacy.train
* Fix typo
* Update wasabi pin
* Fix path checks for when train() is called as function
* Reformat and tidy up pretrain script
* Update argument annotations
* Raise error if model language doesn't match lang
* Document new train command
* Add spacy.errors module
* Update deprecation and user warnings
* Replace errors and asserts with new error message system
* Remove redundant asserts
* Fix whitespace
* Add messages for print/util.prints statements
* Fix typo
* Fix typos
* Move CLI messages to spacy.cli._messages
* Add decorator to display error code with message
An implementation like this is nice because it only modifies the string when it's retrieved from the containing class – so we don't have to worry about manipulating tracebacks etc.
* Remove unused link in spacy.about
* Update errors for invalid pipeline components
* Improve error for unknown factories
* Add displaCy warnings
* Update formatting consistency
* Move error message to spacy.errors
* Update errors and check if doc returned by component is None
