Commit Graph

8898 Commits

Author SHA1 Message Date
Matthew Honnibal
f9946154d9
Add SpanCategorizer component (#6747)
* Draft spancat model

* Add spancat model

* Add test for extract_spans

* Add extract_spans layer

* Upd extract_spans

* Add spancat model

* Add test for spancat model

* Upd spancat model

* Update spancat component

* Upd spancat

* Update spancat model

* Add quick spancat test

* Import SpanCategorizer

* Fix SpanCategorizer component

* Import SpanGroup

* Fix span extraction

* Fix import

* Fix import

* Upd model

* Update spancat models

* Add scoring, update defaults

* Update and add docs

* Fix type

* Update spacy/ml/extract_spans.py

* Auto-format and fix import

* Fix comment

* Fix type

* Fix type

* Update website/docs/api/spancategorizer.md

* Fix comment

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Better defense

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix labels list

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/extract_spans.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/pipeline/spancat.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Set annotations during update

* Set annotations in spancat

* fix imports in test

* Update spacy/pipeline/spancat.py

* replace MaxoutLogistic with LinearLogistic

* fix config

* various small fixes

* remove set_annotations parameter in update

* use our beloved tupley format with recent support for doc.spans

* bugfix to allow renaming the default span_key (scores weren't showing up)

* use different key in docs example

* change defaults to better-working parameters from project (WIP)

* register spacy.extract_spans.v1 for legacy purposes

* Upd dev version so can build wheel

* layers instead of architectures for smaller building blocks

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/spancategorizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Include additional scores from overrides in combined score weights

* Parameterize spans key in scoring

Parameterize the `SpanCategorizer` `spans_key` for scoring purposes so
that it's possible to evaluate multiple `spancat` components in the same
pipeline.

* Use the (intentionally very short) default spans key `sc` in the
  `SpanCategorizer`
* Adjust the default score weights to include the default key
* Adjust the scorer to use `spans_{spans_key}` as the prefix for the
  returned score
* Revert addition of `attr_name` argument to `score_spans` and adjust
  the key in the `getter` instead.

Note that for `spancat` components with a custom `span_key`, the score
weights currently need to be modified manually in
`[training.score_weights]` for them to be available during training. To
suppress the default score weights `spans_sc_p/r/f` during training, set
them to `null` in `[training.score_weights]`.

* Update website/docs/api/scorer.md

* Fix scorer for spans key containing underscore

* Increment version

* Add Spans to Evaluate CLI (#8439)

* Add Spans to Evaluate CLI

* Change to spans_key

* Add spans per_type output

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Fix spancat GPU issues (#8455)

* Fix GPU issues

* Require thinc >=8.0.6

* Switch to glorot_uniform_init

* Fix and test ngram suggester

* Include final ngram in doc for all sizes
* Fix ngrams for docs of the same length as ngram size
* Handle batches of docs that result in no ngrams
* Add tests

Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Nirant <NirantK@users.noreply.github.com>
2021-06-24 12:35:27 +02:00
Ines Montani
fb9b389f52
Merge pull request #8486 from adrianeboyd/bugfix/template-paths-vectors
Preserve paths.vectors/initialize.vectors setting in quickstart template
2021-06-24 13:12:18 +10:00
Ines Montani
a8e8d02ba7
Merge pull request #8465 from explosion/feature/spacy-package-readme 2021-06-24 13:11:08 +10:00
Ines Montani
3982be14e8 Improve fallbacks 2021-06-24 11:55:50 +10:00
Adriane Boyd
393c3c70d7
Various fixes for spans in Docs.from_docs (#8487)
* Fix spans offsets if a doc ends in a single space and no space is
  inserted
* Also include spans key in merged doc for empty spans lists
2021-06-23 15:51:35 +02:00
Adriane Boyd
5aa099505f Preserve paths.vectors/initialize.vectors setting in quickstart template 2021-06-23 11:07:14 +02:00
Ines Montani
cdcbd1023a Auto-generate README in spacy packge 2021-06-22 12:06:25 +10:00
Adriane Boyd
caba63b74f
Set version to v3.1.0 (#8452)
* Update test for v3.1

* Set version to v3.1.0
2021-06-21 10:41:40 +02:00
Adriane Boyd
9fde258053
Use minor version for compatibility check (#8403)
* Use minor version for compatibility check

* Use minor version of compatibility table
* Soften warning message about incompatible models
* Add test for presence of current version in compatibility table

* Add test for download compatibility table

* Use minor version of lower pin in error message if possible

* Fall back to spacy_git_version if available

* Fix unknown version string
2021-06-21 09:39:22 +02:00
Adriane Boyd
ec71a6b572
Filter W036 for entity ruler, etc. (#8424) 2021-06-21 09:34:29 +02:00
Adriane Boyd
7abfa25035
Don't use the same vocab for source models (#8388)
* Don't use the same vocab for source models

The source models should not be loaded with the vocab from the current
pipeline because this loads the vectors from the source model into the
current vocab.

The strings are all copied in `Language.create_pipe_from_source`, so if
the vectors are configured correctly in the current pipeline, the
sourced component will work as expected. If there is a vector mismatch,
a warning is shown. (It's not possible to inspect whether the vectors
are actually used by the component, so a warning is the best option.)

* Update comment on source model loading
2021-06-21 09:33:33 +02:00
Adriane Boyd
83fd04dee5
Update package CLI handling of README and LICENSE (#8422)
* Copy rather than move files to top-level of package
* Add all files to `MANIFEST.in` (primarily for older versions of pip)
* Include the `README.md` contents as `long_description` in the setup
2021-06-18 15:48:53 +02:00
Adriane Boyd
30d4eb506a
Fix setting empty entities in Example.from_dict (#8426) 2021-06-18 10:41:50 +02:00
Matthew Honnibal
6f5e308d17
Support negative examples in partial NER annotations (#8106)
* Support a cfg field in transition system

* Make NER 'has gold' check use right alignment for span

* Pass 'negative_samples_key' property into NER transition system

* Add field for negative samples to NER transition system

* Check neg_key in NER has_gold

* Support negative examples in NER oracle

* Test for negative examples in NER

* Fix name of config variable in NER

* Remove vestiges of old-style partial annotation

* Remove obsolete tests

* Add comment noting lack of support for negative samples in parser

* Additions to "neg examples" PR (#8201)

* add custom error and test for deprecated format

* add test for unlearning an entity

* add break also for Begin's cost

* add negative_samples_key property on Parser

* rename

* extend docs & fix some older docs issues

* add subclass constructors, clean up tests, fix docs

* add flaky test with ValueError if gold parse was not found

* remove ValueError if n_gold == 0

* fix docstring

* Hack in environment variables to try out training

* Remove hack

* Remove NER hack, and support 'negative O' samples

* Fix O oracle

* Fix transition parser

* Remove 'not O' from oracle

* Fix NER oracle

* check for spans in both gold.ents and gold.spans and raise if so, to prevent memory access violation

* use set instead of list in consistency check

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-06-17 17:33:00 +10:00
Adriane Boyd
02bac8f269
Fix non-deterministic deduplication in Greek lemmatizer (#8421) 2021-06-17 09:11:01 +02:00
svlandeg
bb9d2f1546 extend example to ensure the text is preserved 2021-06-16 23:56:35 +02:00
Sofie Van Landeghem
e796aab4b3
Resizable textcat (#7862)
* implement textcat resizing for TextCatCNN

* resizing textcat in-place

* simplify code

* ensure predictions for old textcat labels remain the same after resizing (WIP)

* fix for softmax

* store softmax as attr

* fix ensemble weight copy and cleanup

* restructure slightly

* adjust documentation, update tests and quickstart templates to use latest versions

* extend unit test slightly

* revert unnecessary edits

* fix typo

* ensemble architecture won't be resizable for now

* use resizable layer (WIP)

* revert using resizable layer

* resizable container while avoid shape inference trouble

* cleanup

* ensure model continues training after resizing

* use fill_b parameter

* use fill_defaults

* resize_layer callback

* format

* bump thinc to 8.0.4

* bump spacy-legacy to 3.0.6
2021-06-16 11:45:00 +02:00
Giovanni Toffoli
19521d525b
Added Italian POS-aware lemmatizer. (#8079)
* Added Italian POS-aware lemmatizer.

Also added the code used to build the lookup tables by POS.

* Create gtoffoli.md

* Add imports and format

* Remove helper script

* Use lemma_lookup instead of lemma_lookup_legacy

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-06-16 11:14:45 +02:00
svlandeg
29d83dec0c adjust whitespace tokenizer to avoid sep in split() 2021-06-16 10:58:45 +02:00
Antti Ajanki
5a6125c227
[Finnish tokenizer] Handle conjunction contractions (#8105) 2021-06-16 10:56:47 +02:00
Adriane Boyd
5646fcbe46 Merge remote-tracking branch 'upstream/develop' into chore/develop-into-master-v3.1 2021-06-15 15:05:17 +02:00
Adriane Boyd
480a3bf3be
Make JsonlReader path optional (#8396)
To avoid config errors during training when `[corpora.pretrain.path]` is
`None` with the default `spacy.JsonlCorpus.v1` reader, make the reader
path optional, similar to `spacy.Corpus.v1`.
2021-06-15 14:55:15 +02:00
Paul O'Leary McCann
94e1346f44
Change span lemmas to use original whitespace (fix #8368) (#8391)
* Change span lemmas to use original whitespace (fix #8368)

This is a redo of #8371 based off master.

The test for this required some changes to existing tests. I don't think
the changes were significant but I'd like someone to check them.

* Remove mystery docstring

This sentence was uncompleted for years, and now we will never know how
it ends.
2021-06-15 13:24:54 +02:00
Paul O'Leary McCann
2c105cdbce
Raise error if deps not provided with heads (#8335)
* Fill in deps if not provided with heads

Before this change, if heads were passed without deps they would be
silently ignored, which could be confusing. See #8334.

* Use "dep" instead of a blank string

This is the customary placeholder dep. It might be better to show an
error here instead though.

* Throw error on heads without deps

* Add a test

* Fix tests

* Formatting

* Fix all tests

* Fix a test I missed

* Revise error message

* Clean up whitespace

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-06-15 13:23:32 +02:00
Sofie Van Landeghem
0fd0d949c4
fix 's typo's across code base (#8384) 2021-06-15 10:57:08 +02:00
Adriane Boyd
6b69b8934b
Set version to v3.1.0.dev0 (#8379) 2021-06-14 11:17:35 +02:00
Sofie Van Landeghem
8729307e67
register extract_ngrams layer (#8358)
* register extract_ngrams layer

* fix import

* bump spacy-legacy to 3.0.6

* revert bump (wrong PR)
2021-06-14 10:30:30 +02:00
Adriane Boyd
b98d216205
Update Catalan language data (#8308)
* Update Catalan language data

Update Catalan language data based on contributions from the Text Mining
Unit at the Barcelona Supercomputing Center:

https://github.com/TeMU-BSC/spacy4release/tree/main/lang_data

* Update tokenizer settings for UD Catalan AnCora

Update for UD Catalan AnCora v2.7 with merged multi-word tokens.

* Update test

* Move prefix patternt to more generic infix pattern

* Clean up
2021-06-11 10:21:22 +02:00
Adriane Boyd
d9be9e6cf9
Move README.md and LICENSES_SOURCES in package (#8297)
In addition to `LICENSE`, move the files `README.md` and
`LICENSES_SOURCES` to the top directory in `spacy package` if present in
the model directory.
2021-06-11 10:20:24 +02:00
Adriane Boyd
f4008bdb13
Restrict pymorphy2 requirement to pymorphy2 mode (#8299)
For the Russian and Ukrainian lemmatizers, restrict the `pymorphy2`
requirement to the mode `pymorphy2` so that lookup or other lemmatizer
modes can be loaded without installing `pymorphy2`.
2021-06-11 10:19:22 +02:00
graue70
f34dd0b98f
Fix typos in comments (#8279) 2021-06-07 10:43:54 +02:00
Adriane Boyd
9dfd3c9484 Use warnings.warn instead of logger.warning 2021-06-04 17:44:08 +02:00
Sofie Van Landeghem
f0277bdeab Show warning if entity_ruler runs without patterns (#7807)
* Show warning if entity_ruler runs without patterns

* Show warning if matcher runs without patterns

* fix wording

* unit test for warning once (WIP)

* warn W036 only once

* cleanup

* create filter_warning helper
2021-06-04 17:37:38 +02:00
Paul O'Leary McCann
d959603d51
Don't add duplicate patterns all the time in EntityRuler (fix #8216) (#8246)
* Don't add duplicate patterns (fix #8216)

* Refactor EntityRuler init

This simplifies the EntityRuler init code. This is helpful as prep for
allowing the EntityRuler to reset itself.

* Make EntityRuler.clear reset matchers

Includes a new test for this.

* Tidy PhraseMatcher instantiation

Since the attr can be None safely now, the guard if is no longer
required here.

Also renamed the `_validate` attr. Maybe it's not needed?

* Fix NER test

* Add test to make sure patterns aren't increasing

* Move test to regression tests
2021-06-03 09:05:26 +02:00
Jean-Hugues Roy
ff5cf3606c
Improvements to French stopwords list (#7941)
* "y" etc.

Many changes described in pull request

* Update spacy/lang/fr/stop_words.py

* Update spacy/lang/fr/stop_words.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-06-02 11:50:49 +02:00
Vito De Tullio
3672464e25
applying suggestion to avoid mypy errors (#8265)
* applying suggestion to avoid mypy errors

* sign contributor agreement
2021-06-02 19:25:30 +10:00
Adriane Boyd
4aa1a7d5a3
Remove unsupported attrs from attrs.IDS (#8132)
The attributes `PROB`, `CLUSTER` and `SENT_END` are not supported by
`Lexeme.get_struct_attr` so should not be included through `attrs.IDS`
as supported attributes in `Doc.to_array` and other methods.
2021-06-02 19:16:57 +10:00
Paul O'Leary McCann
d54631f68b
Fix other open calls without context managers (#8245) 2021-05-31 19:04:29 +10:00
Dhruv Naik
283f64a98d
Fix bug from Entityruler: ent_ids returns None for phrases (#8169)
* bugfix for explosion/spaCy#8168

* add test for explosion/spaCy#8168
2021-05-31 18:38:53 +10:00
Narayan Acharya
6b79714080
Address missing config overrides post load of models (#8208) 2021-05-31 18:36:52 +10:00
Sofie Van Landeghem
fff662e41f
Ensemble textcat with listener (#8012)
* add unit test for two listeners, with a textcat ensemble in the middle

* return zero gradients instead of None in accumulate_gradient
2021-05-31 18:21:06 +10:00
Sofie Van Landeghem
ff91e6dac7
Show warning if entity_ruler runs without patterns (#7807)
* Show warning if entity_ruler runs without patterns

* Show warning if matcher runs without patterns

* fix wording

* unit test for warning once (WIP)

* warn W036 only once

* cleanup

* create filter_warning helper
2021-05-31 18:20:27 +10:00
Paul O'Leary McCann
d1a221a374
Add all symbols in Unicode Currency Symbols block (#8212)
* Add all symbols in Unicode Currency Symbols block

In #8102 it came up that the rupee symbol was treated different from
dollar / euro / yen symbols. This adds many symbols not already
included.

* Fix test

* Fix training test
2021-05-31 18:03:40 +10:00
Paul O'Leary McCann
04239e94c7
Use a context manager when reading model (fix #7036) (#8244) 2021-05-31 17:36:17 +10:00
Ines Montani
5957ab74f7
Merge pull request #8112 from svlandeg/bugfix/replace-trf 2021-05-28 11:35:17 +10:00
Sofie Van Landeghem
3c58c0323f
fix docs (#8200) 2021-05-27 10:48:59 +02:00
Sofie Van Landeghem
290bd6ed39
ensure tolerance is properly passed on (#8158) 2021-05-27 18:10:28 +10:00
Adriane Boyd
cd6bd91c3a
Switch default train corpus max_length to 0 in quickstart (#8142)
The behavior of `spacy.Corpus.v1` is unexpected enough for `max_length
!= 0` that `0` is a better default for users creating a new config with
the quickstart.

If not, documents are skipped, sometimes the entire corpus is skipped,
and sometimes documents are (quite unexpectedly for your average user)
split into sentences.
2021-05-20 14:48:09 +02:00
Sofie Van Landeghem
202943bc8c
KB & NEL to/from bytes (#8113)
* unit test for pickling KB

* add pickling test for NEL

* KB to_bytes and from_bytes

* NEL to_bytes and from_bytes

* xfail pickle tests for now

* fix docs

* cleanup
2021-05-20 18:11:30 +10:00
Adriane Boyd
2c545c4c5b
Fix offsets in Span.get_lca_matrix (#8116)
* Fix range in Span.get_lca_matrix

Fix the adjusted token index / lca matrix index ranges for
`_get_lca_matrix` for spans.

* The range for `k` should correspond to the adjusted indices in
`lca_matrix` with the `start` indexed at `0`

* Update test for v3.x
2021-05-17 16:54:23 +02:00
Sofie Van Landeghem
0dffc5d9e2
Custom warning if the doc_bin is too large (#8069)
* custom warning if the doc_bin is too large

* cleanup

* Update spacy/errors.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* fix numbering

* fixing numbering once more

* fixing this seems to be pretty hard

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-05-17 15:48:40 +02:00
Adriane Boyd
b120fb3511
Handle errors while multiprocessing (#8004)
* Handle errors while multiprocessing

Handle errors while multiprocessing without hanging.

* Return the traceback for errors raised while processing a batch, which
  can be handled by the top-level error handler
* Allow for shortened batches due to custom error handlers that ignore
  errors and skip documents

* Define custom components at a higher level

* Also move up custom error handler

* Use simpler component for test

* Switch error type

* Adjust test

* Only call top-level error handler for exceptions

* Register custom test components within tests

Use global functions (so they can be pickled) but register the
components only within the individual tests.
2021-05-17 13:28:39 +02:00
Adriane Boyd
8a2602051c
Update debug data for textcat (#8066)
* Check for unsupported cats values
* Only show labels if train/dev mismatched
* Don't show label counts (only counting positive labels seems odd)
* Use warnings for mismatched train/dev labels
2021-05-17 13:27:04 +02:00
Adriane Boyd
1d59fdbd39
Update Vietnamese tokenizer (#8099)
* Adapt tokenization methods from `pyvi` to preserve text encoding and
whitespace
* Add serialization support similar to Chinese and Japanese

Note: as for Chinese and Japanese, some settings are duplicated in
`config.cfg` and `tokenizer/cfg`.
2021-05-17 18:16:20 +10:00
Adriane Boyd
fe3a4aa846
Add ENT_ID and NORM to DocBin strings (#8054)
Save strings for token attributes `ENT_ID` and `NORM` in `DocBin`
strings.
2021-05-17 18:06:11 +10:00
Adriane Boyd
82fa81d095
Make all Span attrs writable (#8062)
Also allow `Span` string properties `label_` and `kb_id_` to be writable
following #6696.
2021-05-17 18:05:45 +10:00
svlandeg
235e9f5488 call replace_listener_cfg attr if it's available 2021-05-12 17:19:38 +02:00
svlandeg
44a3a58599 call replace_listener attr if it's available 2021-05-12 16:01:02 +02:00
svlandeg
ece8be4fec extend test to training with replaced tok2vec layer 2021-05-12 11:32:22 +02:00
Adriane Boyd
d5bbd1f94f
Handle partial entities in Span.as_doc (#8055)
* Handle partial entities in Span.as_doc

In `Span.as_doc` replace partial entities at the beginning or end of the
span with missing entity annotation.

Fixes a bug where invalid entity annotation (no initial `B`) was
returned for an initial partial entity.

* Check for empty span in ents conversion

Note: `Span.as_doc()` will still fail on an empty span due to failures
in `Span.vector`.
2021-05-11 17:10:16 +02:00
Paul O'Leary McCann
bdeaf3a18b
Fix/fix en ordinals (#8028)
* Fix #8019

"th" is not the only ordinal ending.

* Add some more ordinal tests
2021-05-07 10:26:42 +02:00
Adriane Boyd
6788d90f61
Preserve existing ENT_KB_ID annotation in NER (#7988)
* Preserve existing ENT_KB_ID annotation in NER

Preserve `ent_kb_id` annotation on existing entity spans, which is not
preserved by the transition system.

* Simplify kb_id assignment

* Simplify further
2021-05-06 18:49:55 +10:00
Sofie Van Landeghem
02a6a5fea0
Fix 'debug model' for transformers + generalize (#7973)
* add overrides to docs

* fix debug model with transformer

* assume training data is set in config
2021-05-06 18:43:32 +10:00
Adriane Boyd
cc5aeaed29
Add Chinese PTB tags to glossary (#7993) 2021-05-06 18:43:03 +10:00
Adriane Boyd
0a22fed634
Fix span offsets for Matcher(as_spans) on spans (#7992)
Fix returned span offsets for `Matcher(as_spans=True)(span)`.
2021-05-06 18:42:44 +10:00
Adriane Boyd
7d5db41ac3
Skip vector ngram backoff if minn is not set (#7925) 2021-05-06 18:34:35 +10:00
Sofie Van Landeghem
e9037d8fc0
make EntityLinker robust for nO=None (#7930) 2021-05-06 18:14:47 +10:00
Adriane Boyd
a71194362f
Fix Docs.from_docs for all empty docs (#8009) 2021-05-05 18:44:14 +02:00
Adriane Boyd
31528f62ed
Add / to nb infixes (#7991) 2021-05-04 11:00:10 +02:00
Santiago Castro
e99ff6f255
Fix typo in Language docstrings (#7958) 2021-05-03 14:44:09 +02:00
Adriane Boyd
7cf5bd072f
Refactor util.to_ternary_int (#7944)
* Refactor to avoid literal comparison with `is`
* Extend tests
2021-04-29 16:58:54 +02:00
Sevdimali
49aed683cc
Azerbaijani language added (#7911) 2021-04-28 14:42:02 +02:00
Paul O'Leary McCann
8007d5c814
Check if the resume path points to a directory (#7919)
This came up in #7878, but if --resume-path is a directory then loading
the weights will fail. On Linux this will give a straightforward error
message, but on Windows it gives "Permission Denied", which is
confusing.
2021-04-28 09:17:15 +02:00
Paul O'Leary McCann
de6b5ed14d
Fix percent unk display in debug data (#7886)
* Fix percent unk display

This was showing (ratio %), so 10% would show as 0.10%. Fix by
multiplying ration by 100.

Might want to add a warning if this is over a threshold.

* Only show whole-integer percents
2021-04-27 09:16:35 +02:00
Janis Klaise
1690595e4d
Update load_lookups return type and docstring (#7907)
* Update load_lookups return type and docstring

* Add contributor agreement
2021-04-27 09:13:39 +02:00
Adriane Boyd
ae855a4625
Clean up Morphology imports and definitions (#7441)
* Clean up Morphology imports and definitions

* Whitespace formatting
2021-04-26 16:54:23 +02:00
Adriane Boyd
ceee1ecf17
Replace cpdef variables with cdef (#7834) 2021-04-26 16:54:02 +02:00
Adriane Boyd
95c0833656
Add training option to set annotations on update (#7767)
* Add training option to set annotations on update

Add a `[training]` option called `set_annotations_on_update` to specify
a list of components for which the predicted annotations should be set
on `example.predicted` immediately after that component has been
updated. The predicted annotations can be accessed by later components
in the pipeline during the processing of the batch in the same `update`
call.

* Rename to annotates / annotating_components

* Add test for `annotating_components` when training from config

* Add documentation
2021-04-26 16:53:53 +02:00
Jacopo Farina
c105ed10fd
Remove torino from stop words (#7634)
Torino is the proper name of a city and the token has no other meaning
2021-04-26 16:53:43 +02:00
Sofie Van Landeghem
e0b29f8ef7
Fix scoring normalization (#7629)
* fix scoring normalization

* score weights by total sum instead of per component

* cleanup

* more cleanup
2021-04-26 16:53:38 +02:00
Sofie Van Landeghem
95e3cf576b
Optionally append lang for packaged model name (#7417)
* Add empty lines at the end of Python files

* Only prepend the lang code if it's not there already

* Update spacy/cli/package.py

* fix whitespace stripping
2021-04-26 16:53:21 +02:00
Adriane Boyd
8a95475b3d
Set version to v3.0.6 (#7854) 2021-04-22 16:33:26 +02:00
Adriane Boyd
36ecba224e
Set up GPU CI testing (#7293)
* Set up CI for tests with GPU agent

* Update tests for enabled GPU

* Fix steps filename

* Add parallel build jobs as a setting

* Fix test requirements

* Fix install test requirements condition

* Fix pipeline models test

* Reset current ops in prefer/require testing

* Fix more tests

* Remove separate test_models test

* Fix regression 5551

* fix StaticVectors for GPU use

* fix vocab tests

* Fix regression test 5082

* Move azure steps to .github and reenable default pool jobs

* Consolidate/rename azure steps

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-22 14:58:29 +02:00
Adriane Boyd
bdb485cc80
Add callback to copy vocab/tokenizer from model (#7750)
* Add callback to copy vocab/tokenizer from model

Add callback `spacy.copy_from_base_model.v1` to copy the tokenizer
settings and/or vocab (including vectors) from a base model.

* Move spacy.copy_from_base_model.v1 to spacy.training.callbacks

* Add documentation

* Modify to specify model as tokenizer and vocab params
2021-04-22 12:36:50 +02:00
Adriane Boyd
f68fc29130
Update sent_starts in Example.from_dict (#7847)
* Update sent_starts in Example.from_dict

Update `sent_starts` for `Example.from_dict` so that `Optional[bool]`
values have the same meaning as for `Token.is_sent_start`.

Use `Optional[bool]` as the type for sent start values in the docs.

* Use helper function for conversion to ternary ints
2021-04-22 11:32:45 +02:00
Adriane Boyd
f4339f9bff
Fix tokenizer cache flushing (#7836)
* Fix tokenizer cache flushing

Fix/simplify tokenizer init detection in order to fix cache flushing
when properties are modified.

* Remove init reloading logic

* Remove logic disabling `_reload_special_cases` on init
  * Setting `rules` last in `__init__` (as before) means that setting
    other properties doesn't reload any special cases
  * Reset `rules` first in `from_bytes` so that setting other properties
    during deserialization doesn't reload any special cases
    unnecessarily
* Reset all properties in `Tokenizer.from_bytes` to allow any settings
  to be `None`

* Also reset special matcher when special cache is flushed

* Remove duplicate special case validation

* Add test for special cases flushing

* Extend test for tokenizer deserialization of None values
2021-04-22 18:14:57 +10:00
Sofie Van Landeghem
cfad7e21d5
fix config parsing of ints/strings (#7755)
* add few failing tests for parsing integers and strings

* bump thinc to 8.0.3
2021-04-22 18:09:13 +10:00
Adriane Boyd
d2bdaa7823
Replace negative rows with 0 in StaticVectors (#7674)
* Replace negative rows with 0 in StaticVectors

Replace negative row indices with 0-vectors in `StaticVectors`.

* Increase versions related to StaticVectors

* Increase versions of all architctures and layers related to
`StaticVectors`
* Improve efficiency of 0-vector operations

Parallel `spacy-legacy` PR: https://github.com/explosion/spacy-legacy/pull/5

* Update config defaults to new versions

* Update docs
2021-04-22 18:04:15 +10:00
Adriane Boyd
0e7f94b247
Update Tokenizer.explain with special matches (#7749)
* Update Tokenizer.explain with special matches

Update `Tokenizer.explain` and the pseudo-code in the docs to include
the processing of special cases that contain affixes or whitespace.

* Handle optional settings in explain

* Add test for special matches in explain

Add test for `Tokenizer.explain` for special cases containing affixes.
2021-04-19 19:08:20 +10:00
Adriane Boyd
07b41c38ae
Register CharEmbed layer (#7805) 2021-04-19 18:39:34 +10:00
Sofie Van Landeghem
c786e98e56
assemble CLI command (#7783)
* assemble CLI command

* ensure assemble runs even without training section

* cleanup
2021-04-19 18:39:11 +10:00
Adriane Boyd
15bd230413
Set catalogue lower pin to v2.0.3 (#7762)
* Set catalogue lower pin to v2.0.2

* Update importlib-metadata pins to match

* Require catalogue v2.0.3

Switch to vendored `importlib-metadata` v3.2.0 provided by `catalogue`.
2021-04-19 18:37:17 +10:00
Adriane Boyd
1ad646cbcf
Improve checks for sourced components (#7490)
* Improve checks for sourced components

* Remove language class checks

* Convert python warning to logger warning

* Remove unused warning

* Fix formatting
2021-04-19 18:36:32 +10:00
Sofie Van Landeghem
05bdbe28bb
Fix vectors data on GPU (#7626)
* ensure vectors data is stored on right device

* ensure the added vector is on the right device

* move vector to numpy before iterating

* move best_rows to numpy before iterating
2021-04-19 18:30:03 +10:00
Bram Vanroy
ed561cf428
Terminology: deprecated vs obsolete (#7621)
* Terminology: deprecated vs obsolete

Typically, deprecated is used for functionality that is bound to become unavailable but that can still be used. Obsolete is used for features that have been removed. In E941, I think what is meant is "obsolete" since loading a model by a shortcut simply does not work anymore (and throws an error). This is different from downloading a model with a shortcut, which is deprecated but still works.

In light of this, perhaps all other error codes should be checked as well.

* clarify that the link command is removed and not just deprecated

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-12 14:37:00 +02:00
Sofie Van Landeghem
8d7af5b2b1
Ensure hyphen in config file works as string value (#7642)
* add test for serializing '-' in a config file

* bump srsly to 2.4.1
2021-04-12 14:35:57 +02:00
Sofie Van Landeghem
27dbbb9903
Bugfix/nel crossing sentence (#7630)
* ensure each entity gets a KB ID, even when it's not within a sentence

* cleanup
2021-04-12 18:08:01 +10:00
Adriane Boyd
73a8c0f992
Update debug data further for v3 (#7602)
* Update debug data further for v3

* Remove new/existing label distinction (new labels are not immediately
distinguishable because the pipeline is already initialized)
* Warn on missing labels in training data for all components except parser
* Separate textcat and textcat_multilabel sections
* Add section for morphologizer

* Reword missing label warnings
2021-04-09 11:53:42 +02:00
Stanislav Schmidt
2516896849
Make vocab update in get_docs deterministic (#7603)
* Make vocab update in get_docs deterministic

The attribute `DocBin.strings` is a set. In `DocBin.get_docs`
a given vocab is updated by iterating over this set.
Iteration over a python set produces an arbitrary ordering,
therefore vocab is updated non-deterministically.

When training (fine-tuning) a spacy model, the base model's
vocabulary will be updated with the new vocabulary in the
training data in exactly the way described above. After
serialization, the file `model/vocab/strings.json` will
be sorted in an arbitrary way. This prevents reproducible
model training.

* Revert "Make vocab update in get_docs deterministic"

This reverts commit d6b87a2f55.

* Sort strings in StringStore serialization

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-09 11:53:13 +02:00
Adriane Boyd
8008e2f75b
Use morph hash in lemmatizer cache key (#7690)
Use the morph hash rather than the `MorphAnalysis` object in the cache
key so that the `Lemmatizer` can be pickled.
2021-04-08 13:22:38 +02:00
Adriane Boyd
e6b7600adf
Fix parser sourcing in NER converter (#7631) 2021-04-08 12:25:03 +02:00
Sofie Van Landeghem
204c2f116b
Extend score_spans for overlapping & non-labeled spans (#7209)
* extend span scorer with consider_label and allow_overlap

* unit test for spans y2x overlap

* add score_spans unit test

* docs for new fields in scorer.score_spans

* rename to include_label

* spell out if-else for clarity

* rename to 'labeled'

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-04-08 12:19:17 +02:00
Paul O'Leary McCann
c362006cb9
Fix is_sent_start when converting from JSON (fix #7635) (#7655)
Data in the JSON format is split into sentences, and each sentence is
saved with is_sent_start flags. Currently the flags are 1 for the first
token and 0 for the others. When deserialized this results in a pattern
of True, None, None, None... which makes single-sentence documents look
as though they haven't had sentence boundaries set.

Since items saved in JSON format have been split into sentences already,
the is_sent_start values should all be True or False.
2021-04-08 18:24:52 +10:00
Adriane Boyd
82d3caf861
Implement replace_listeners for source in config (#7620)
Implement replace_listeners for sourced components loaded from a config.
2021-04-08 18:21:22 +10:00
broaddeep
ee159b8543
Support match alignments (#7321)
* Support match alignments

* change naming from match_alignments to with_alignments, add conditional flow if with_alignments is given, validate with_alignments, add related test case

* remove added errors, utilize bint type, cleanup whitespace

* fix no new line in end of file

* Minor formatting

* Skip alignments processing if as_spans is set

* Add with_alignments to Matcher API docs

* Update website/docs/api/matcher.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-04-08 18:10:14 +10:00
Adriane Boyd
ff84075839
Support large/infinite training corpora (#7208)
* Support infinite generators for training corpora

Support a training corpus with an infinite generator in the `spacy
train` training loop:

* Revert `create_train_batches` to the state where an infinite generator
can be used as the in the first epoch of exactly one epoch without
resulting in a memory leak (`max_epochs != 1` will still result in a
memory leak)
* Move the shuffling for the first epoch into the corpus reader,
renaming it to `spacy.Corpus.v2`.

* Switch to training option for shuffling in memory

Training loop:

* Add option `training.shuffle_train_corpus_in_memory` that controls
whether the corpus is loaded in memory once and shuffled in the training
loop
  * Revert changes to `create_train_batches` and rename to
`create_train_batches_with_shuffling` for use with `spacy.Corpus.v1` and
a corpus that should be loaded in memory
  * Add `create_train_batches_without_shuffling` for a corpus that
should not be shuffled in the training loop: the corpus is merely
batched during training

Corpus readers:

* Restore `spacy.Corpus.v1`
* Add `spacy.ShuffledCorpus.v1` for a corpus shuffled in memory in the
reader instead of the training loop
  * In combination with `shuffle_train_corpus_in_memory = False`, each
epoch could result in a different augmentation

* Refactor create_train_batches, validation

* Rename config setting to `training.shuffle_train_corpus`
* Refactor to use a single `create_train_batches` method with a
`shuffle` option
* Only validate `get_examples` in initialize step if:
  * labels are required
  * labels are not provided

* Switch back to max_epochs=-1 for streaming train corpus

* Use first 100 examples for stream train corpus init

* Always check validate_get_examples in initialize
2021-04-08 18:08:04 +10:00
graue70
81fd595223
Fix __add__ method of PRFScore (#7557)
* Add failing test for PRFScore

* Fix erroneous implementation of __add__

* Simplify constructor

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-04-08 17:34:14 +10:00
Paul O'Leary McCann
7944761ba7
Add warning if initial vectors are empty (#7641)
See #7637, where this came up.
2021-04-04 20:20:24 +02:00
Ayush Chaurasia
3c2ce41dd8
W&B integration: Optional support for dataset and model checkpoint logging and versioning (#7429)
* Add optional artifacts logging

* Update docs

* Update spacy/training/loggers.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/training/loggers.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/training/loggers.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Bump WandbLogger Version

* Add documentation of v1 to legacy docs

* bump spacy-legacy to 3.0.2 (to be released)

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-04-01 19:36:23 +02:00
Adriane Boyd
348d1829c7
Preserve user data for DependencyMatcher on spans (#7528)
* Preserve user data for DependencyMatcher on spans

* Clean underscore in test

* Modify test to use extensions stored in user data
2021-03-30 12:26:22 +02:00
m0canu1
921feee092
Added more exception to the italian language from https://forum.wordr… (#7246)
* Added more exception to the italian language from https://forum.wordreference.com/threads/le-abbreviazioni-nella-lingua-italiana-abbreviations-in-italian.2464189/

* Remove unnecessary exception

Co-authored-by: Alexandru Mocanu <alexandru.mocanu@augeos.it>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-03-30 10:23:32 +02:00
Adriane Boyd
27a48f2802
Fix/update extension copying in Span.as_doc and Doc.from_docs (#7574)
* Adjust custom extension data when copying user data in `Span.as_doc()`
* Restrict `Doc.from_docs()` to adjusting offsets for custom extension
data
  * Update test to use extension
  * (Duplicate bug fix for character offset from #7497)
2021-03-30 09:49:12 +02:00
Adriane Boyd
3ae8661085
Fix tensor retokenization for non-numpy ops (#7527)
Implement manual `append` and `delete` for non-numpy ops.
2021-03-29 22:34:48 +11:00
Adriane Boyd
139f655f34
Merge doc.spans in Doc.from_docs() (#7497)
Merge data from `doc.spans` in `Doc.from_docs()`.

* Fix internal character offset set when merging empty docs (only
affects tokens and spans in `user_data` if an empty doc is in the list
of docs)
2021-03-29 22:34:01 +11:00
Adriane Boyd
d59f968d08
Keep sent starts without parse in retokenization (#7424)
In the retokenizer, only reset sent starts (with
`set_children_from_head`) if the doc is parsed. If there is no parse,
merged tokens have the unset `token.is_sent_start == None` by default after
retokenization.
2021-03-29 22:32:00 +11:00
Paul O'Leary McCann
cdab341a75 Remove mention of -1 for early stopping (fix #7535)
Maybe this used to work differently, but currently a negative patience
just causes immediate termination.
2021-03-23 11:50:35 +09:00
Ines Montani
4bd3d01aaf
Merge pull request #7471 from polm/fix/listener-warnings 2021-03-22 12:45:02 +01:00
Ines Montani
d545ab4ca4
Merge pull request #7495 from adrianeboyd/bugfix/norm-ux
Update lexeme_norm checks
2021-03-22 12:44:52 +01:00
Ines Montani
66ebd5c69e
Merge pull request #7491 from adrianeboyd/bugfix/corpus-depr-props
Update deprecated doc.is_sentenced in Corpus
2021-03-21 02:17:24 +01:00
Adriane Boyd
39153ef90f Update lexeme_norm checks
* Add util method for check
* Add new languages to list with lexeme norm tables
* Add check to all relevant components
* Add config details to warning message

Note that we're not actually inspecting the model config to see if
`NORM` is used as an attribute, so it may warn in cases where it's not
relevant.
2021-03-19 10:59:27 +01:00
Adriane Boyd
c771ec22f0 Update matcher errors and docs
* Mention `tagger+attribute_ruler` in `POS`/`MORPH` error messages for
`Matcher` and `PhraseMatcher`
* Document `Matcher.__call__(allow_missing=)`
2021-03-19 10:11:18 +01:00
Adriane Boyd
48b90c8e1c Update deprecated doc.is_sentenced in Corpus 2021-03-19 09:43:52 +01:00
Ines Montani
4f9aaa2366
Merge pull request #7451 from adrianeboyd/chore/add-py.typed
Add py.typed
2021-03-19 02:08:16 +01:00
Ines Montani
66b900a76d
Merge pull request #7440 from adrianeboyd/bugfix/ru-pymorph2-lookup-lemmatize
Rename and update Russian pymorphy2 lookup lemmatize
2021-03-19 01:54:08 +01:00
Ines Montani
2c6fa8c890
Merge pull request #7489 from adrianeboyd/bugfix/callbacks-entry-points
Check for callbacks entry points
2021-03-19 01:53:53 +01:00
Adriane Boyd
0ad9e16ec3 Check for callbacks entry points 2021-03-18 21:18:25 +01:00
Lukas Winkler
3c362ac520
replace "is not" with != 2021-03-18 21:09:11 +01:00
Paul O'Leary McCann
40bc01e668 Proactively remove unused listeners
With this the changes in initialize.py might be unecessary.

Requires testing.
2021-03-17 22:41:41 +09:00
Paul O'Leary McCann
ef77c88638 Don't warn about components not in the pipeline
See here:

https://github.com/explosion/spaCy/discussions/7463

Still need to check if there are any side effects of listeners being
present but not in the pipeline, but this commit will silence the
warnings.
2021-03-17 14:56:04 +09:00
Adriane Boyd
02b5c8a1a2 Add py.typed 2021-03-16 09:48:31 +01:00
Adriane Boyd
3bcf74aca7 Rename and update ru pymorphy2 lookup lemmatize
* To allow default lookup lemmatization with a blank Russian model,
rename pymorphy2 lookup mode to `pymorphy2_lookup`

* Bug fix: update pymorphy2 lookup lemmatize to return list rather than
string
2021-03-15 11:11:06 +01:00
Ines Montani
068b97a617
Merge pull request #7408 from adrianeboyd/bugfix/load-keyword-only 2021-03-13 04:25:50 +01:00
Adriane Boyd
03e9e7b567 Add --code option to init fill-config 2021-03-12 10:03:57 +01:00
Adriane Boyd
ce6317231f Add --code to spacy debug CLI 2021-03-12 09:51:26 +01:00
Adriane Boyd
508cb3bef7
Also exclude user hooks in displacy conversion (#7419) 2021-03-12 09:41:59 +01:00
Adriane Boyd
deffc3a532
Update package requirements tests (#7409)
* Add hypothesis to packages skipped in version check

* Add numpy back to tests following 2df1ab8a
2021-03-11 16:24:31 +01:00
Adriane Boyd
124304b146 Add vocab kwarg back to spacy.load
* Additional minor formatting and docs cleanup
2021-03-11 10:58:59 +01:00
Adriane Boyd
fbf3a755d7 Make spacy.load kwargs keyword-only 2021-03-11 09:36:58 +01:00
Adriane Boyd
53a3b967ac
Update thinc pin and set version to v3.0.5 (#7389) 2021-03-10 11:10:53 +01:00
Adriane Boyd
3b911ee5ef
Set version to v3.0.4 (#7376) 2021-03-09 16:49:41 +01:00
Adriane Boyd
d746ea6278
Add warning about GPU selection in Jupyter notebooks (#7075)
* Initial warning

* Update check

* Redo edit

* Move jupyter warning to helper method

* Add link with details to warnings
2021-03-09 15:35:21 +01:00
Ines Montani
37fc495f5d
Merge pull request #7353 from jankrepl/fix_entity_rules_labels 2021-03-09 15:09:24 +01:00
Sofie Van Landeghem
932887b950
textcat scoring fix and multi_label docs (#6974)
* add multi-label textcat to menu

* add infobox on textcat API

* add info to v3 migration guide

* small edits

* further fixes in doc strings

* add infobox to textcat architectures

* add textcat_multilabel to overview of built-in components

* spelling

* fix unrelated warn msg

* Add textcat_multilabel to quickstart [ci skip]

* remove separate documentation page for multilabel_textcategorizer

* small edits

* positive label clarification

* avoid duplicating information in self.cfg and fix textcat.score

* fix multilabel textcat too

* revert threshold to storage in cfg

* revert threshold stuff for multi-textcat

Co-authored-by: Ines Montani <ines@ines.io>
2021-03-09 23:04:22 +11:00
Sofie Van Landeghem
39de3602e0
return custom error in nlp.initialize (#7104)
* return custom error in nlp.initialize

* Rename error

Co-authored-by: Ines Montani <ines@ines.io>
2021-03-09 23:01:31 +11:00
Jan Krepl
f26b61e001 Make sure sorted 2021-03-09 10:49:53 +01:00
Adriane Boyd
3f3e8110dc
Fix lowercase augmentation (#7336)
* Fix aborted/skipped augmentation for `spacy.orth_variants.v1` if
lowercasing was enabled for an example
* Simplify `spacy.orth_variants.v1` for `Example` vs. `GoldParse`
* Preserve reference tokenization in `spacy.lower_case.v1`
2021-03-09 14:02:32 +11:00
Sofie Van Landeghem
cd70c3cb79
Fixing pretrain (#7342)
* initialize NLP with train corpus

* add more pretraining tests

* more tests

* function to fetch tok2vec layer for pretraining

* clarify parameter name

* test different objectives

* formatting

* fix check for static vectors when using vectors objective

* clarify docs

* logger statement

* fix init_tok2vec and proc.initialize order

* test training after pretraining

* add init_config tests for pretraining

* pop pretraining block to avoid config validation errors

* custom errors
2021-03-09 14:01:13 +11:00
Adriane Boyd
97bcf2ae3a
Fix patience for identical scores (#7250)
* Fix patience for identical scores

Fix training patience so that the earliest best step is chosen for
identical max scores.

* Restore break, remove print

* Explicitly define best_step for clarity
2021-03-06 18:42:14 +11:00
Ines Montani
ea555b03e0
Merge pull request #7255 from adrianeboyd/bugfix/extraneous-tok2vec
Omit unused tok2vec/transformer components
2021-03-03 23:15:06 +11:00
svlandeg
d900c55061 consistently use registry as callable 2021-03-02 17:56:28 +01:00
Adriane Boyd
8a4200d4e9 Omit unused tok2vec/transformer components
Omit unused tok2vec/transformer components in quickstart template.
2021-03-02 15:53:30 +01:00
Sofie Van Landeghem
212f0e779e
Support doc.spans in Example.from_dict (#7197)
* add support for spans in Example.from_dict

* add unit tests

* update error to E879
2021-03-03 01:12:54 +11:00
Adriane Boyd
fb98862337
Add hint for --gpu-id to CLI device info (#7234)
* Add hint for --gpu-id to CLI device info

If the user has `cupy` and an available GPU, add a hint about using
`--gpu-id 0` to the CLI output.

* Undo change to original CPU message
2021-03-03 01:11:18 +11:00
Ines Montani
635ae55b74
Merge pull request #7237 from adrianeboyd/bugfix/is-cython-func-7224 2021-03-03 00:05:16 +11:00
Adriane Boyd
0efb7413f9 Use make_tempdir instead 2021-03-01 17:54:14 +01:00
Adriane Boyd
e9f7f9a4bc Fix is_cython_func for additional imported code
* Fix `is_cython_func` for imported code loaded under `python_code`
module name
* Add `make_named_tempfile` context manager to test utils to test
loading of imported code
* Add test for validation of `initialize` params in custom module
2021-03-01 16:37:39 +01:00
Sofie Van Landeghem
dd99872bb0
Fix spans weak ref in doc copy (#7225)
* failing unit test

* ensure that doc.spans refers to the copied doc, not the old

* add type info
2021-02-28 12:32:48 +11:00
Ines Montani
408b94887a
Merge pull request #7207 from adrianeboyd/docs/get-noun-chunks [ci skip]
Extend docs related to Vocab.get_noun_chunks
2021-02-27 11:51:08 +11:00
Ines Montani
dc46fa078f
Merge pull request #7220 from svlandeg/docs/has_annotation [ci skip]
has_annotation docs fix
2021-02-27 11:50:34 +11:00
Ines Montani
0dbc2a1b16
Merge pull request #7222 from adrianeboyd/bugfix/quickstart-recs-bg-bn
Fix formatting in bg/bn quickstart recs
2021-02-27 11:50:02 +11:00
svlandeg
2010219a7f import wandb failure - UX 2021-02-26 18:00:39 +01:00
Adriane Boyd
ee7bb0b393 Fix formatting in bg/bn quickstart recs 2021-02-26 17:08:37 +01:00
svlandeg
248339039e fix type in docs 2021-02-26 14:27:10 +01:00
Adriane Boyd
e43d43db32
Allow sourcing disabled components (#7215)
Check `component_names` instead of `pipe_names` to allow sourcing
disabled components.
2021-02-26 13:50:56 +01:00
Adriane Boyd
10c930cc96
Re-refactor Sentencizer with Pipe API (#7176)
Reapply the refactoring (#4721) so that `Sentencizer` uses the faster
`predict` and `set_annotations` for both `__call__` and `pipe`.
2021-02-26 09:48:14 +01:00
Adriane Boyd
6a37f343d5 Extend docs related to Vocab.get_noun_chunks 2021-02-25 16:38:21 +01:00
Ines Montani
592678fb7d
Merge pull request #7073 from adrianeboyd/feature/logger-level-in-formatter
Add time and level to default logging formatter
2021-02-24 22:40:46 +11:00
Sofie Van Landeghem
0563cd73d6
Fix SpanGroup import (#7182)
* import SpanGroup from tokens module

* revert edits from different PR

* add to __all__
2021-02-24 21:06:16 +11:00
Sofie Van Landeghem
b92f81d5da
fix NEL config and IO, and n_sents functionality (#7100)
* fix NEL config and IO, and n_sents functionality

* add docs

* fix test
2021-02-22 14:49:52 +11:00
Sofie Van Landeghem
113e8d082b
only evaluate named entities for NEL if there is a corresponding gold span (#7074) 2021-02-22 11:06:50 +11:00
Adriane Boyd
264862c67a
Fix Ukrainian lemmatizer init (#7127)
Fix class variable and init for `UkrainianLemmatizer` so that it loads
the `uk` dictionaries rather than having the parent `RussianLemmatizer`
override with the `ru` settings.
2021-02-22 11:05:08 +11:00
Sofie Van Landeghem
ba5a50f62b
NEL docs & UX (#7129)
* EL set_kb docs fix

* custom warning for set_kb mistake
2021-02-22 11:04:22 +11:00
Boian Tzonev
cca8651fc8
Bulgarian tokenizer exceptions (#7114)
* [Bulgarian] Add tokenizer exceptions and like_num for Bulgarian

* [Bulgarian] Add tokenizer exceptions and like_num for Bulgarian
2021-02-19 19:19:19 +01:00
Sofie Van Landeghem
709c9e75af
span.ent only returns first sentence (#7084)
* return first sentence when span contains sentence boundary

* docs fix

* small fixes

* cleanup
2021-02-19 23:02:38 +11:00
Adriane Boyd
30e1a89aeb
Fix displacy output in evaluate CLI (#7122)
Now that `nlp.evaluate()` does not modify the examples, rerun the
pipeline on the (limited) texts in order to provide the predicted
annotation in the displacy output option.
2021-02-19 23:01:20 +11:00
Adriane Boyd
4188beda87
Fix conll converter option (#7071)
Map `conll` to the NER converter, not the `CoNLL-U` converter.
2021-02-18 10:22:41 +01:00
Adriane Boyd
a3293efc48 Add time and level to default logging formatter 2021-02-15 14:19:20 +01:00
Ines Montani
1e3a326e53 Change Dutch transformer recommendation [ci skip]
https://github.com/explosion/spaCy/discussions/6529#discussioncomment-366620
2021-02-14 15:30:16 +11:00
Ines Montani
f4f46b617f
Preserve sourced components in fill-config (fixes #7055) (#7058) 2021-02-14 14:02:14 +11:00
Matthew Honnibal
0fb8d437c0
Fix sentence fragments bug (#7056, #7035) (#7057)
* Add test for #7035

* Update test for issue 7056

* Fix test

* Fix transitions method used in testing

* Fix state eol detection when rebuffer

* Clean up redundant fix
2021-02-14 13:38:13 +11:00
Ines Montani
660642902a Increment version [ci skip] 2021-02-14 13:36:13 +11:00
Matthew Honnibal
b31471b5b8 Set version to v3.0.2 2021-02-13 23:50:00 +11:00
Ines Montani
9ba715ed16 Tidy up and auto-format 2021-02-13 12:55:56 +11:00
Ines Montani
34ee0fbd70
Merge pull request #7011 from Shumie82/master 2021-02-13 12:30:42 +11:00
Ines Montani
e583050547
Merge pull request #7039 from svlandeg/debug 2021-02-13 11:53:41 +11:00
Ines Montani
6c450decfc Fix punctuation settings and add to initialize tests 2021-02-13 11:51:21 +11:00
Ines Montani
f4712a634e
Merge pull request #7046 from adrianeboyd/bugfix/vocab-pickle-noun-chunks-6891
Include noun chunks method when pickling Vocab
2021-02-13 11:43:03 +11:00
Adriane Boyd
0ee2ae86bf Update trf quickstart recommendations
Add/update trf recommendations for Bengali, Hindi, Sinhala, and Tamil
based on #7044.
2021-02-12 15:55:17 +01:00
svlandeg
03b4ec7d7f fix typo 2021-02-12 14:30:16 +01:00
Adriane Boyd
5e47a54d29 Include noun chunks method when pickling Vocab 2021-02-12 13:27:46 +01:00
svlandeg
aa3ad8825d loop instead of any 2021-02-12 13:14:30 +01:00
svlandeg
278e9eaa14 remove ner 2021-02-11 21:08:04 +01:00
svlandeg
ebeedfc70b regression test for 7029 2021-02-11 20:56:48 +01:00
svlandeg
a52d466bfc any instead of all 2021-02-11 20:50:55 +01:00
Shumi
4e514f1ea8
Update stop_words.py
I have deleted line 1 to 5 and the statement print(STOP_WORDS)
2021-02-11 21:30:34 +02:00
Shumi
0d57e84b7b
Update lex_attrs.py
I have removed line 1 to 4
2021-02-11 21:28:23 +02:00
Shumi
37ec67f868
Update examples.py
I have removed two lines:
# coding: utf8
from __future__ import unicode_literals

And updated: >>> from spacy.lang.tn.examples import sentences
2021-02-11 21:25:58 +02:00
Shumi
39eeba6760
Update __init__.py
Added infixes = TOKENIZER_INFIXES
2021-02-11 21:20:46 +02:00
Ines Montani
26bf642afd
Fix issue #7019: Handle None scores in evaluate printer (#7026) 2021-02-11 16:45:23 +11:00
Ines Montani
6b9026a219
Merge pull request #7000 from explosion/feature/project-yml-overrides
Support env vars and CLI overrides for project.yml
2021-02-11 12:31:45 +11:00
Ines Montani
ad9ce3c8f6 Fix issue #6950: allow pickling Tok2Vec with listeners 2021-02-11 11:37:39 +11:00
Shumi
ed3397727e
Delete tag_map.py
Tag map file is deleted. I will add it later because it was failing validations
2021-02-10 20:41:18 +02:00
Shumi
7c8721b1bd
Update tag_map.py
Updated tag_map
2021-02-10 20:21:22 +02:00
Shumi
f6be28cfb2
Added files to Setswana Language
Add South African Setswana Language
2021-02-10 20:15:13 +02:00
Shumi
24046fef17
South African Setswana language
Please accept the additional of Setswana language
2021-02-10 20:12:33 +02:00
Peter Baumann
61b04a70d5
Run PhraseMatcher on Spans (#6918)
* Add regression test

* Run PhraseMatcher on Spans

* Add test for PhraseMatcher on Spans and Docs

* Add SCA

* Add test with 3 matches in Doc, 1 match in Span

* Update docs

* Use doc.length for find_matches in tokenizer

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-02-10 23:43:32 +11:00
Ines Montani
21176c69b0 Update and add test 2021-02-10 14:12:00 +11:00
Ines Montani
c08b3f294c Support env vars and CLI overrides for project.yml 2021-02-10 13:45:27 +11:00
Koichi Yasuoka
8ed788660b
Several callable objects do not have __qualname__ 2021-02-09 14:43:02 +09:00
Adriane Boyd
6108dabdc8 Rephrase error related to sample data initialization
Now that the initialize step is fully implemented, the source of E923 is
typically missing or improperly converted/formatted data rather than a
bug in spaCy, so rephrase the error and message and remove the prompt to
open an issue.
2021-02-08 09:21:36 +01:00
Sofie Van Landeghem
6ed423c16c
reduce memory load when reading all vectors from file (#6945)
* reduce memory load when reading all vectors from file

* one more small typo fix
2021-02-07 08:05:43 +08:00
Sofie Van Landeghem
a323ef90df
ensure the loss value is cast as float (#6928) 2021-02-07 07:51:56 +08:00
melonwater211
a7977b5143
The test spacy/tests/vocab_vectors/test_lexeme.py::test_vocab_lexeme_add_flag_auto_id seems to fail occasionally when the test suite is run in a random order. (#6956)
```python
    def test_vocab_lexeme_add_flag_auto_id(en_vocab):
        is_len4 = en_vocab.add_flag(lambda string: len(string) == 4)
        assert en_vocab["1999"].check_flag(is_len4) is True
        assert en_vocab["1999"].check_flag(IS_DIGIT) is True
        assert en_vocab["199"].check_flag(is_len4) is False
>       assert en_vocab["199"].check_flag(IS_DIGIT) is True
E       assert False is True
E        +  where False = <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840>(3)
E        +    where <built-in method check_flag of spacy.lexeme.Lexeme object at 0x7fa155c36840> = <spacy.lexeme.Lexeme object at 0x7fa155c36840>.check_flag

spacy/tests/vocab_vectors/test_lexeme.py:49: AssertionError
```

>  `pytest==6.1.1`
>
>  `numpy==1.19.2`
>
> `Python version: 3.8.3`

To reproduce the error, run `pytest --random-order-bucket=global --random-order-seed=170158 -v spacy/tests`

If `test_vocab_lexeme_add_flag_auto_id` is run after `test_vocab_lexeme_add_flag_provided_id`, it fails.
It seems like `test_vocab_lexeme_add_flag_provided_id` uses the `IS_DIGIT` bit for testing purposes but does not reset the bit.

This solution seems to work but, if anyone has a better fix, please let me know and I will integrate it.
2021-02-07 07:51:34 +08:00
René Octavio Queiroz Dias
59271e887a
fix: TransformerListener with TextCatEnsemble (#6951)
* bug: Regression test
Issue #6946

* fix: Fix issue #6946

* chore: Remove regression test
2021-02-06 13:44:51 +01:00
René Octavio Queiroz Dias
999ff03b19
fix: Fix textcat labels to expect a Optional[Iterable[str]] instead of Optional[Dict] (#6911)
* docs: Add agreement

* bug: Regression test

Issue #6908

* fix: Changed from Dict to Iterable[str]

Fix #6908

* Update test to use make_tempdir

* fix: Fix WindowsPath error

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-02-04 23:37:13 +01:00
Adriane Boyd
b903de3fcb
Pass on vocab arg in spacy.blank() (#6924) 2021-02-04 15:09:01 +01:00
svlandeg
f852af2acf add capture arg 2021-02-02 19:47:12 +01:00
Matthew Honnibal
b6a198481b Set version to v3.0.0 2021-02-02 20:26:17 +11:00
Sofie Van Landeghem
f319d2765f
Add capture argument to project_run (#6878)
* add capture argument to project_run and run_commands

* git bump to 3.0.1

* Set version to 3.0.1.dev0

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
2021-02-02 10:11:15 +08:00
Sofie Van Landeghem
f638306598
remove link_components flag again (#6883) 2021-02-02 10:08:40 +08:00
Ines Montani
a59f3fcf5d Make wheel the default format and update docs [ci skip] 2021-02-01 23:18:43 +11:00
Ines Montani
b9573e9e22 Fix pip args 2021-02-01 23:15:00 +11:00
Ines Montani
b46073234a Fix default clone branch and error handling [ci skip] 2021-02-01 22:29:04 +11:00
Sofie Van Landeghem
acabb284dd
Fix linking resumed components (#6859)
* link components across enabled, resumed and frozen

* revert renaming

* revert renaming, the sequel
2021-02-01 22:19:58 +11:00
Adriane Boyd
35a863cd27 Remove nlp.tokenizer from quickstart template
Remove `nlp.tokenizer` from quickstart template so that the default
language-specific tokenizer settings are filled instead.
2021-02-01 11:20:12 +01:00
svlandeg
91e72c031e reformatting 2021-01-30 17:29:33 +01:00
svlandeg
a8d84188f0 add stop words
Co-authored-by: tewodrosm <tedmaam2006@gmail.com>
2021-01-30 17:26:49 +01:00
Ines Montani
f058cbd751 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2021-01-30 21:03:25 +11:00
Ines Montani
14f631f52c Update parent package and version [ci skip] 2021-01-30 20:12:42 +11:00
Ines Montani
3435b894df Remove nightly reference from auto docs [ci skip] 2021-01-30 20:12:08 +11:00
Ines Montani
d0c3775712 Replace links to nightly docs [ci skip] 2021-01-30 20:09:38 +11:00
Ines Montani
b26a3daa9a
Merge pull request #6860 from explosion/feature/package-wheel 2021-01-30 14:17:01 +11:00
Ines Montani
2332c4280b Update and use unified --build option 2021-01-30 13:11:36 +11:00
Ines Montani
e6accb3a9e Tidy up and auto-format 2021-01-30 12:52:33 +11:00
Ines Montani
817b0db521 Fix escape sequence 2021-01-30 12:39:58 +11:00
Ines Montani
526b416118 Tidy up comments 2021-01-30 12:34:09 +11:00
Ines Montani
30765674d0 Merge branch 'master' into develop 2021-01-30 12:20:28 +11:00
Ines Montani
2609ba4e89 Support building wheel in spacy package 2021-01-30 11:54:02 +11:00
Pamphile ROY
41ee75ac6d
Remove --no-cache-dir when downloading models
When `--no-cache-dir` is present, it prevents caching to properly function.

If the user still wants to do this, there is the possibility to pass options with `user_pip_args`.
But you should not enforce options like these. In my case this is preventing some docker build (using buildkit caching) to have proper caching of models.
2021-01-29 15:37:44 +01:00
Ines Montani
bbf080dfe5
Merge pull request #6645 from bittlingmayer/patch-3 2021-01-30 01:26:28 +11:00
Adriane Boyd
bced6309e5
Add full exceptions with spaces 2021-01-29 14:27:22 +01:00
Ines Montani
7886d59c56 Add check for remove_listener method 2021-01-29 23:47:30 +11:00
Ines Montani
7694f76dd1 Update warning and mention replace_listeners 2021-01-29 23:46:01 +11:00
Ines Montani
94232aea08 Improve E889 2021-01-29 23:39:23 +11:00
Ines Montani
924396c20c Merge branch 'feature/replace-listeners' of https://github.com/explosion/spaCy into feature/replace-listeners 2021-01-29 21:43:10 +11:00
Ines Montani
2102082478 Make Tok2Vec.remove_listener return bool
Whether listener was removed
2021-01-29 21:41:38 +11:00
Ines Montani
e766e8c56d
Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-01-29 21:41:17 +11:00
Ines Montani
bc089b693c Update tests 2021-01-29 19:38:09 +11:00
Ines Montani
325f47500d Move replacement logic to Language.from_config 2021-01-29 19:37:04 +11:00
Ines Montani
0f3e3eedc2 Add Tok2vec.remove_listener 2021-01-29 19:36:38 +11:00