* Handle spacy-legacy in package CLI for dependencies
* Implement legacy backoff in spacy registry.find
* Remove unused import
* Update and format test
* pass alignments to callbacks
* refactor for single callback loop
* Update spacy/matcher/matcher.pyx
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix surprises when asking for the root of a git repo
In the case of the first asset I wanted to get from git, the data I
wanted was the entire repository. I tried leaving "path" blank, which
gave a less-than-helpful error, and then I tried `path: "/"`, which
started copying my entire filesystem into the project. The path I should
have used was "".
I've made two changes to make this smoother for others:
- The 'path' within a git clone defaults to ""
- If the path points outside of the tmpdir that the git clone goes
into, we fail with an error
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* use a descriptive error instead of a default
plus some minor fixes from PR review
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* check for None values in assets
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
* Fix inference of epoch_resume
When an epoch_resume value is not specified individually, it can often
be inferred from the filename. The value inference code was there but
the value wasn't passed back to the training loop.
This also adds a specific error in the case where no epoch_resume value
is provided and it can't be inferred from the filename.
* Add new error
* Always use the epoch resume value if specified
Before this the value in the filename was used if found
* overfitting test on non-overlapping entities
* add failing overfitting test for overlapping entities
* failing test for list comprehension
* remove test that was put in separate PR
* bugfix
* cleanup
* test for error after Doc has been garbage collected
* warn about using a SpanGroup when the Doc has been garbage collected
* add warning to the docs
* rephrase slightly
* raise error instead of warning
* update
* move warning to doc property
* Refactor to use list comps and enumerate.
Replace loops that append to a list with a list comprehensions where this does not change the behavior; replace range(len(...)) loops with enumerate. Correct one typo in a comment. Replace a call to set() with a set literal.
* Undo double assignment.
Expand `tokens_to_key[j] = k = self._get_matcher_key(key, i, j)` to two statements.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Sign contributors agreement
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow passing in array vars for speedup
This fixes#8845. Not sure about the docstring changes here...
* Update docs
Types maybe need more detail? Maybe not?
* Run prettier on docs
* Update spacy/tokens/span.pyx
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add scores to output in spancat
This exposes the scores as an attribute on the SpanGroup. Includes a
basic test.
* Add basic doc note
* Vectorize score calcs
* Add "annotation format" section
* Update website/docs/api/spancategorizer.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Clean up doc section
* Ran prettier on docs
* Get arrays off the gpu before iterating over them
* Remove int() calls
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add stub files for main API classes
* Add contributor agreement for ezorita
* Update types for ndarray and hash()
* Fix __getitem__ and __iter__
* Add attributes of Doc and Token classes
* Overload type hints for Span.__getitem__
* Fix type hint overload for Span.__getitem__
Co-authored-by: Luca Dorigo <dorigoluca@gmail.com>
* Fix check for RIGHT_ATTRs in dep matcher
If a non-anchor node does not have RIGHT_ATTRS, the dep matcher throws
an E100, which says that non-anchor nodes must have LEFT_ID, REL_OP, and
RIGHT_ID. It specifically does not say RIGHT_ATTRS is required.
A blank RIGHT_ATTRS is also valid, and patterns with one will be
excepted. While not normal, sometimes a REL_OP is enough to specify a
non-anchor node - maybe you just want the head of another node
unconditionally, for example.
This change just sets RIGHT_ATTRS to {} if not present. Alternatively
changing E100 to state RIGHT_ATTRS is required could also be reasonable.
* Fix test
This test was written on the assumption that if `RIGHT_ATTRS` isn't
present an error will be raised. Since the proposed changes make it so
an error won't be raised this is no longer necessary.
* Revert test, update error message
Error message now lists missing keys, and RIGHT_ATTRS is required.
* Use list of required keys in error message
Also removes unused key param arg.
* Pass excludes when serializing vocab
Additional minor bug fix:
* Deserialize vocab in `EntityLinker.from_disk`
* Add test for excluding strings on load
* Fix formatting
* Support list values and IS_INTERSECT in Matcher
* Support list values as token attributes for set operators, not just as
pattern values.
* Add `IS_INTERSECT` operator.
* Fix incorrect `ISSUBSET` and `ISSUPERSET` in schema and docs.
* Rename IS_INTERSECT to INTERSECTS
