* Support local filesystem remotes for projects
* Fix support for local filesystem remotes for projects
* Use `FluidPath` instead of `Pathy` to support both filesystem and
remote paths
* Create missing parent directories if required for local filesystem
* Add a more general `_file_exists` method to support both `Pathy`,
`Path`, and `smart_open`-compatible URLs
* Add explicit `smart_open` dependency starting with support for
`compression` flag
* Update `pathy` dependency to exclude older versions that aren't
compatible with required `smart_open` version
* Update docs to refer to `Pathy` instead of `smart_open` for project
remotes (technically you can still push to any `smart_open`-compatible
path but you can't pull from them)
* Add tests for local filesystem remotes
* Update pathy for general BlobStat sorting
* Add import
* Remove _file_exists since only Pathy remotes are supported
* Format CLI docs
* Clean up merge
* Update warning, add tests for project requirements check
* Make warning more general for differences between PEP 508 and pip
* Add tests for _check_requirements
* Parameterize test
* Add fallback in requirements check, only check once
* Rename to skip_requirements_check
* Update spacy/cli/project/run.py
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
* Fix flag handling in dvc
Prior to this commit, if a flag (--verbose or --quiet) was passed to
DVC, it would be added to the end of the generated dvc command line.
This would result in the command being interpreted as part of the actual
command to run, rather than an argument to dvc. This would result in
command lines like:
spacy project run preprocess --verbose
That would fail with an error that there's no such directory as
`--verbose`.
This change puts the flags at the front of the dvc command so that they
are interpreted correctly. It removes the `run_dvc_commands` function,
which had been reduced to just a for loop and wasn't used elsewhere.
A separate problem is that there's no way to specify the quiet behaviour
to dvc from the command line, though it's unclear if that's a bug.
* Add dvc quiet flag to docs
* Handle case in DVC where no commands are appropriate
If only have commands with no deps or outputs (admittedly unlikely), you
get a weird error about the dvc file not existing. This gives explicit
output instead.
* Add support for quiet flag
* Fix command execution
Commands are strings now because they're joined further up.
* new error message when 'project run assets'
* new error message when 'project run assets'
* Update spacy/cli/project/run.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Try cloning repo from main & master
* fixup! Try cloning repo from main & master
* fixup! fixup! Try cloning repo from main & master
* refactor clone and check for repo:branch existence
* spacing fix
* make mypy happy
* type util function
* Update spacy/cli/project/clone.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: draft for optional flag/download_all options.
* Allow assets to be optional in spacy project: added OPTIONAL_DEFAULT reflecting default asset optionality.
* Allow assets to be optional in spacy project: renamed --all to --extra.
* Allow assets to be optional in spacy project: included optional flag in project config test.
* Allow assets to be optional in spacy project: added documentation.
* Allow assets to be optional in spacy project: fixing deprecated --all reference.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Allow assets to be optional in spacy project: fixed project_assets() docstring.
* Allow assets to be optional in spacy project: adjusted wording in justification of optional assets.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: switched to as keyword in project.yml. Updated docs.
* Allow assets to be optional in spacy project: updated comment.
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in output.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in docstring..
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test..
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: replacing 'optional' with 'extra' in test.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Allow assets to be optional in spacy project: renamed OPTIONAL_DEFAULT to EXTRA_DEFAULT.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Check for assets with size of 0 bytes
* Update spacy/cli/project/assets.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* 🚨 Ignore all existing Mypy errors
* 🏗 Add Mypy check to CI
* Add types-mock and types-requests as dev requirements
* Add additional type ignore directives
* Add types packages to dev-only list in reqs test
* Add types-dataclasses for python 3.6
* Add ignore to pretrain
* 🏷 Improve type annotation on `run_command` helper
The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.
* 🔧 Allow variable type redefinition in limited contexts
These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:
```python
def process(items: List[str]) -> None:
# 'items' has type List[str]
items = [item.split() for item in items]
# 'items' now has type List[List[str]]
...
```
This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`
These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.
* 🏷 Add type annotation to converters mapping
* 🚨 Fix Mypy error in convert CLI argument verification
* 🏷 Improve type annotation on `resolve_dot_names` helper
* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`
* 🏷 Add type annotations for more `Vocab` attributes
* 🏷 Add loose type annotation for gold data compilation
* 🏷 Improve `_format_labels` type annotation
* 🏷 Fix `get_lang_class` type annotation
* 🏷 Loosen return type of `Language.evaluate`
* 🏷 Don't accept `Scorer` in `handle_scores_per_type`
* 🏷 Add `string_to_list` overloads
* 🏷 Fix non-Optional command-line options
* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`
* ➕ Install `typing_extensions` in Python 3.8+
The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.
Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.
These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.
* 🏷 Improve type annotation for `Language.pipe`
These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.
Fixes#8772
* ➖ Don't install `typing-extensions` in Python 3.8+
After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉
These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.
* resolve mypy errors for Strict pydantic types
* refactor code to avoid missing return statement
* fix types of convert CLI command
* avoid list-set confustion in debug_data
* fix typo and formatting
* small fixes to avoid type ignores
* fix types in profile CLI command and make it more efficient
* type fixes in projects CLI
* put one ignore back
* type fixes for render
* fix render types - the sequel
* fix BaseDefault in language definitions
* fix type of noun_chunks iterator - yields tuple instead of span
* fix types in language-specific modules
* 🏷 Expand accepted inputs of `get_string_id`
`get_string_id` accepts either a string (in which case it returns its
ID) or an ID (in which case it immediately returns the ID). These
changes extend the type annotation of `get_string_id` to indicate that
it can accept either strings or IDs.
* 🏷 Handle override types in `combine_score_weights`
The `combine_score_weights` function allows users to pass an `overrides`
mapping to override data extracted from the `weights` argument. Since it
allows `Optional` dictionary values, the return value may also include
`Optional` dictionary values.
These changes update the type annotations for `combine_score_weights` to
reflect this fact.
* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`
* 🏷 Fix redefinition of `wandb_logger`
These changes fix the redefinition of `wandb_logger` by giving a
separate name to each `WandbLogger` version. For
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3`
as `wandb_logger` for now.
* more fixes for typing in language
* type fixes in model definitions
* 🏷 Annotate `_RandomWords.probs` as `NDArray`
* 🏷 Annotate `tok2vec` layers to help Mypy
* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6
Also remove an import that I forgot to move to the top of the module 😅
* more fixes for matchers and other pipeline components
* quick fix for entity linker
* fixing types for spancat, textcat, etc
* bugfix for tok2vec
* type annotations for scorer
* add runtime_checkable for Protocol
* type and import fixes in tests
* mypy fixes for training utilities
* few fixes in util
* fix import
* 🐵 Remove unused `# type: ignore` directives
* 🏷 Annotate `Language._components`
* 🏷 Annotate `spacy.pipeline.Pipe`
* add doc as property to span.pyi
* small fixes and cleanup
* explicit type annotations instead of via comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
* Fix surprises when asking for the root of a git repo
In the case of the first asset I wanted to get from git, the data I
wanted was the entire repository. I tried leaving "path" blank, which
gave a less-than-helpful error, and then I tried `path: "/"`, which
started copying my entire filesystem into the project. The path I should
have used was "".
I've made two changes to make this smoother for others:
- The 'path' within a git clone defaults to ""
- If the path points outside of the tmpdir that the git clone goes
into, we fail with an error
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* use a descriptive error instead of a default
plus some minor fixes from PR review
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
* check for None values in assets
Signed-off-by: Elia Robyn Speer <elia@explosion.ai>
Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
* add capture argument to project_run and run_commands
* git bump to 3.0.1
* Set version to 3.0.1.dev0
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
