Commit Graph

15714 Commits

Author SHA1 Message Date
Paul O'Leary McCann
a44b7d4622
Add experimental coref docs (#11291)
* Add experimental coref docs

* Docs cleanup

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Apply changes from code review

* Fix prettier formatting

It seems a period after a number made this think it was a list?

* Update docs on examples for initialize

* Add docs for coref scorers

* Remove 3.4 notes from coref

There won't be a "new" tag until it's in core.

* Add docs for span cleaner

* Fix docs

* Fix docs to match spacy-experimental

These weren't properly updated when the code was moved out of spacy
core.

* More doc fixes

* Formatting

* Update architectures

* Fix links

* Fix another link

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2022-09-27 18:11:23 +09:00
Adriane Boyd
877671e09a
Preserve missing entity annotation in augmenters (#11540)
Preserve both `-` and `O` annotation in augmenters rather than relying
on `Example.to_dict`'s default support for one option outside of labeled
entity spans.

This is intended as a temporary workaround for augmenters for v3.4.x.
The behavior of `Example` and related IOB utils could be improved in the
general case for v3.5.
2022-09-27 10:16:51 +02:00
Paul O'Leary McCann
936a5f0506
Fix English pipeline names in 3.4 release notes (#11542) 2022-09-27 08:25:24 +02:00
Richard Hudson
6f692a06d5
Remove side effects from Doc.__init__() (#11506)
* Remove side effects from Doc.__init__()

* Changes based on review comment

* Readd test

* Change interface of Doc.__init__()

* Simplify test

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update doc.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-09-26 15:58:21 +02:00
Basile Dura
f40d2fac29
fix: remove duplicate v3.2 (#11530) 2022-09-23 13:18:51 +02:00
Kevin Humphreys
0da324ab5b reinstate FUZZY operator
with length-based distance function
2022-09-22 19:26:52 -07:00
Kevin Humphreys
eab96f7c03 fix min distance 2022-09-22 15:37:19 -07:00
Raphael Mitsch
af9b01ef97
Add dependency check to project step runs (#11226)
* Add dependency check to project step running.

* Fix dependency mismatch warning.

* Remove newline.

* Add types-setuptools to setup.cfg.

* Move types-setuptools to test requirements. Move warnings into _validate_requirements(). Handle file reading in project_run().

* Remove newline formatting for output of package conflicts.

* Show full version conflict message instead of just package name.

* Update spacy/cli/project/run.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Fix typo.

* Re-add rephrasing of message for conflicting packages. Remove requirements path redundancy.

* Update spacy/cli/project/run.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/cli/project/run.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Print unified message for requirement conflicts and missing requirements.

* Update spacy/cli/project/run.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Fix warning message.

* Print conflict/missing messages individually.

* Print conflict/missing messages individually.

* Add check_requirements setting in project.yml to disable requirements check.

* Update website/docs/usage/projects.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/usage/projects.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update description of project.yml structure in projects.md.

* Update website/docs/usage/projects.md

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Prettify projects docs.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-16 16:54:31 +02:00
github-actions[bot]
279358be63
Auto-format code with black (#11513)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-09-16 11:50:19 +02:00
Sofie Van Landeghem
df0b815c23
more explicit Example constructor example (#11489)
* make constructor example for Example more explicit

* shorten example and add spaces
2022-09-16 09:26:33 +02:00
Kevin Humphreys
4a677acf5d don't allow more edits than characters 2022-09-15 16:14:24 -07:00
Kevin Humphreys
252e9ab3af exclude whitespace tokens 2022-09-15 15:50:07 -07:00
Kevin Humphreys
a1c984043a remove polyleven 2022-09-15 12:42:17 -07:00
Kevin Humphreys
711f16cc82 Merge branch 'master' into rapidfuzz 2022-09-15 11:54:16 -07:00
Sofie Van Landeghem
d5c8498f2f
disable mypy run for Python 3.10 (#11508) (#11511) 2022-09-15 17:41:25 +02:00
Sofie Van Landeghem
0509f90874
add dot (#11500) 2022-09-15 17:29:42 +02:00
Sofie Van Landeghem
ca1ad67458
disable mypy run for Python 3.10 (#11508) 2022-09-15 15:51:19 +02:00
Kevin Humphreys
b393525b50 Merge branch 'rapidfuzz' of https://github.com/kwhumphreys/spaCy into rapidfuzz 2022-09-14 15:56:18 -07:00
Kevin Humphreys
b7599dfb2f fuzzy match only on oov tokens 2022-09-14 15:54:05 -07:00
Adriane Boyd
7c98245c0c
Add levenshtein from polyleven (#11418)
Add a simple levenshtein distance function using the implementation from
the polyleven library as `spacy.matcher.levenshtein`.
2022-09-14 17:05:22 +02:00
Richard Hudson
3f0c3ad7d3
Correct alignment example and documentation (#11491)
* Correct example and documentation

* Added altered example.md

* Changes based on review + apply prettier

* Remote unnecessary 'the'

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>
2022-09-14 09:36:55 +02:00
Adriane Boyd
6be6913ba5
Update cupy extras (#11279)
* Update cupy extras:

* Extend to v11
* Add `cupy-cuda11x` and `cupy-wheel`
* Update quickstart to use `cupy-wheel` for CUDA 10.2+

* Rename cuda-wheel to cuda-autodetect, remove repeated CUDA in menu
2022-09-13 09:04:53 +02:00
Kevin Humphreys
a6d26a0195 switch to polyleven
(Python package)
2022-09-12 16:45:51 -07:00
Kevin Humphreys
568a843c09 revert changes added for fuzzy param 2022-09-12 16:45:51 -07:00
Kevin Humphreys
3591a69d35 switch to FUZZYn predicates
use Levenshtein distance.
remove fuzzy param.
remove rapidfuzz_capi.
2022-09-12 16:45:51 -07:00
Kevin Humphreys
974e5f9902 case fix 2022-09-12 16:45:51 -07:00
Kevin Humphreys
e636f4941b simplify fuzzy sets 2022-09-12 16:45:51 -07:00
Kevin Humphreys
9c0f9368a9 handle fuzzy sets 2022-09-12 16:45:51 -07:00
Kevin Humphreys
0859e391c6 remove unnecessary dependency 2022-09-12 16:45:50 -07:00
Kevin Humphreys
ee25d434b6 tidying 2022-09-12 16:45:50 -07:00
Kevin Humphreys
3dba984db9 fix type properly 2022-09-12 16:45:50 -07:00
Kevin Humphreys
63f5e1331d add fuzzy attribute list 2022-09-12 16:45:50 -07:00
Kevin Humphreys
594674db92 add FUZZY predicate 2022-09-12 16:45:50 -07:00
Kevin Humphreys
426f3349d4 fix type 2022-09-12 16:45:50 -07:00
Kevin Humphreys
3a63ad1913 include rapidfuzz_capi
not yet used
2022-09-12 16:45:50 -07:00
Kevin Humphreys
66e9fdd246 add fuzzy param to EntityMatcher 2022-09-12 16:45:50 -07:00
Kevin Humphreys
dacfb57b03 enable fuzzy matching 2022-09-12 16:45:50 -07:00
Sofie Van Landeghem
cc10a27c59
Prevent tok2vec to broadcast to listeners when predicting (#11385)
* replicate bug with tok2vec in annotating components

* add overfitting test with a frozen tok2vec

* remove broadcast from predict and check doc.tensor instead

* remove broadcast

* proper error

* slight rephrase of documentation
2022-09-12 15:36:48 +02:00
Madeesh Kannan
0ec9a696e6
Fix config validation failures caused by NVTX pipeline wrappers (#11460)
* Enable Cython<->Python bindings for `Pipe` and `TrainablePipe` methods

* `pipes_with_nvtx_range`: Skip hooking methods whose signature cannot be ascertained

When loading pipelines from a config file, the arguments passed to individual pipeline components is validated by `pydantic` during init. For this, the validation model attempts to parse the function signature of the component's c'tor/entry point so that it can check if all mandatory parameters are present in the config file.

When using the `models_and_pipes_with_nvtx_range` as a `after_pipeline_creation` callback, the methods of all pipeline components get replaced by a NVTX range wrapper **before** the above-mentioned validation takes place. This can be problematic for components that are implemented as Cython extension types - if the extension type is not compiled with Python bindings for its methods, they will have no signatures at runtime. This resulted in `pydantic` matching the *wrapper's* parameters with the those in the config and raising errors.

To avoid this, we now skip applying the wrapper to any (Cython) methods that do not have signatures.
2022-09-12 14:55:41 +02:00
kadarakos
6b83fee58d
Assets message (#11458)
* new error message when 'project run assets'

* new error message when 'project run assets'

* Update spacy/cli/project/run.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-09 17:17:10 +02:00
Adriane Boyd
8a86a35eab
Remove has_letters in config template (#11465)
Due to problems with the javascript conversion in the website
quickstart, remove the `has_letters` setting to simplify generating
`attrs` for the default `tok2vec`.

Additionally reduce `PREFIX` as in the trained pipelines.
2022-09-09 15:10:04 +02:00
github-actions[bot]
0c72c6bb2c
Auto-format code with black (#11468)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2022-09-09 11:21:17 +02:00
Madeesh Kannan
aac9a58c29
Add docs for the spacy.models_and_pipes_with_nvtx_range.v1 callback (#11463)
* Add docs for the `spacy.models_and_pipes_with_nvtx_range.v1` callback

* Add `new` tag
2022-09-09 10:46:01 +02:00
Paul O'Leary McCann
2602a30d32
Fix DVC command example (#11457)
This command doesn't have the project dir, but it's required.
2022-09-08 13:42:47 +02:00
Raphael Mitsch
1f23c615d7
Refactor KB for easier customization (#11268)
* Add implementation of batching + backwards compatibility fixes. Tests indicate issue with batch disambiguation for custom singular entity lookups.

* Fix tests. Add distinction w.r.t. batch size.

* Remove redundant and add new comments.

* Adjust comments. Fix variable naming in EL prediction.

* Fix mypy errors.

* Remove KB entity type config option. Change return types of candidate retrieval functions to Iterable from Iterator. Fix various other issues.

* Update spacy/pipeline/entity_linker.py

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Update spacy/pipeline/entity_linker.py

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Update spacy/kb_base.pyx

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Update spacy/kb_base.pyx

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Update spacy/pipeline/entity_linker.py

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Add error messages to NotImplementedErrors. Remove redundant comment.

* Fix imports.

* Remove redundant comments.

* Rename KnowledgeBase to InMemoryLookupKB and BaseKnowledgeBase to KnowledgeBase.

* Fix tests.

* Update spacy/errors.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Move KB into subdirectory.

* Adjust imports after KB move to dedicated subdirectory.

* Fix config imports.

* Move Candidate + retrieval functions to separate module. Fix other, small issues.

* Fix docstrings and error message w.r.t. class names. Fix typing for candidate retrieval functions.

* Update spacy/kb/kb_in_memory.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/models/entity_linker.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix typing.

* Change typing of mentions to be Span instead of Union[Span, str].

* Update docs.

* Update EntityLinker and _architecture docs.

* Update website/docs/api/entitylinker.md

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

* Adjust message for E1046.

* Re-add section for Candidate in kb.md, add reference to dedicated page.

* Update docs and docstrings.

* Re-add section + reference for KnowledgeBase.get_alias_candidates() in docs.

* Update spacy/kb/candidate.pyx

* Update spacy/kb/kb_in_memory.pyx

* Update spacy/pipeline/legacy/entity_linker.py

* Remove canididate.md. Remove mistakenly added config snippet in entity_linker.py.

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-08 10:38:07 +02:00
Paul O'Leary McCann
515d5c65d5
Add dev docs on satellite packages (#11435)
* Add dev docs on satellite packages

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Add displacy link

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-09-07 15:24:22 +02:00
Adriane Boyd
f292569b1a
Merge pull request #11444 from shadeMe/merge-master-into-develop
Merge `master` into `develop`
2022-09-06 19:58:21 +02:00
shademe
21000ae935
Merge branch 'master' into merge-master-into-develop 2022-09-06 17:50:07 +02:00
Paul O'Leary McCann
ff0522f8da Fix asent pip package name 2022-09-06 19:19:05 +09:00
Sofie Van Landeghem
d801cccd38
Merge pull request #11430 from rmitsch/chore/synch-develop
Synch develop with master
2022-09-05 15:07:18 +02:00