* adding unit test for spacy.load with disable/exclude string arg
* allow pure strings in from_config
* update docs
* upstream type adjustements
* docs update
* make docstring more consistent
* Update spacy/language.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* two more cleanups
* fix type in internal method
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix `test_{prefer,require}_gpu`
These tests assumed that GPUs are only supported with CuPy, but since Thinc 8.1
we also support Metal Performance Shaders.
* test_misc: arrange thinc imports to be together
* Add lang folder for la (Latin)
* Add Latin lang classes
* Add minimal tokenizer exceptions
* Add minimal stopwords
* Add minimal lex_attrs
* Update stopwords, tokenizer exceptions
* Add la tests; register la_tokenizer in conftest.py
* Update spacy/lang/la/lex_attrs.py
Remove duplicate form in Latin lex_attrs
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update natto-py version spec (#11222)
* Update natto-py version spec
* Update setup.cfg
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add scorer to textcat API docs config settings (#11263)
* Update docs for pipeline initialize() methods (#11221)
* Update documentation for dependency parser
* Update documentation for trainable_lemmatizer
* Update documentation for entity_linker
* Update documentation for ner
* Update documentation for morphologizer
* Update documentation for senter
* Update documentation for spancat
* Update documentation for tagger
* Update documentation for textcat
* Update documentation for tok2vec
* Run prettier on edited files
* Apply similar changes in transformer docs
* Remove need to say annotated example explicitly
I removed the need to say "Must contain at least one annotated Example"
because it's often a given that Examples will contain some gold-standard
annotation.
* Run prettier on transformer docs
* chore: add 'concepCy' to spacy universe (#11255)
* chore: add 'concepCy' to spacy universe
* docs: add 'slogan' to concepCy
* Support full prerelease versions in the compat table (#11228)
* Support full prerelease versions in the compat table
* Fix types
* adding spans to doc_annotation in Example.to_dict (#11261)
* adding spans to doc_annotation in Example.to_dict
* to_dict compatible with from_dict: tuples instead of spans
* use strings for label and kb_id
* Simplify test
* Update data formats docs
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix regex invalid escape sequences (#11276)
* Add W605 to the errors raised by flake8 in the CI (#11283)
* Clean up automated label-based issue handling (#11284)
* Clean up automated label-based issue handline
1. upgrade tiangolo/issue-manager to latest
2. move needs-more-info to tiangolo
3. change needs-more-info close time to 7 days
4. delete old needs-more-info config
* Use old, longer message
* Fix label name
* Fix Dutch noun chunks to skip overlapping spans (#11275)
* Add test for overlapping noun chunks
* Skip overlapping noun chunks
* Update spacy/tests/lang/nl/test_noun_chunks.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Docs: displaCy documentation - data types, `parse_{deps,ents,spans}`, spans example (#10950)
* add in spans example and parse references
* rm autoformatter
* rm extra ents copy
* TypedDict draft
* type fixes
* restore non-documentation files
* docs update
* fix spans example
* fix hyperlinks
* add parse example
* example fix + argument fix
* fix api arg in docs
* fix bad variable replacement
* fix spacing in style
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* fix spacing on table
* fix spacing on table
* rm temp files
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* include span_ruler for default warning filter (#11333)
* Add uk pipelines to website (#11332)
* Check for . in factory names (#11336)
* Make fixes for PR #11349
* Fix roman numeral coverage in #11349
Co-authored-by: Patrick J. Burns <patricks@diyclassics.org>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Lj Miranda <12949683+ljvmiranda921@users.noreply.github.com>
Co-authored-by: Jules Belveze <32683010+JulesBelveze@users.noreply.github.com>
Co-authored-by: stefawolf <wlf.ste@gmail.com>
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
* Add token and span custom attributes to to_json()
* Change logic for to_json
* Add functionality to from_json
* Small adjustments
* Move token/span attributes to new dict key
* Fix test
* Fix the same test but much better
* Add backwards compatibility tests and adjust logic
* Add test to check if attributes not set in underscore are not saved in the json
* Add tests for json compatibility
* Adjust test names
* Fix tests and clean up code
* Fix assert json tests
* small adjustment
* adjust naming and code readability
* Adjust naming, added more tests and changed logic
* Fix typo
* Adjust errors, naming, and small test optimization
* Fix byte tests
* Fix bytes tests
* Change naming and json structure
* update schema
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/tokens/doc.pyx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/tokens/doc.pyx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update schema for underscore attributes
* Adjust underscore schema
* adjust schema tests
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* adding spans to doc_annotation in Example.to_dict
* to_dict compatible with from_dict: tuples instead of spans
* use strings for label and kb_id
* Simplify test
* Update data formats docs
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* add additional REL_OP
* change to condition and new rel_op symbols
* add operators to docs
* add the anchor while we're in here
* add tests
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
After the precomputable affine table of shape [nB, nF, nO, nP] is
computed, padding with shape [1, nF, nO, nP] is assigned to the first
row of the precomputed affine table. However, when we are indexing the
precomputed table, we get a row of shape [nF, nO, nP]. CuPy versions
before 10.0 cannot paper over this shape difference.
This change fixes compatibility with CuPy < 10.0 by squeezing the first
dimension of the padding before assignment.
* precompute_hiddens/Parser: do not look up CPU ops
`get_ops("cpu")` is quite expensive. To avoid this, we want to cache the
result as in #11068. However, for 3.x we do not want to change the ABI.
So we avoid the expensive lookup by using NumpyOps. This should have a
minimal impact, since `get_ops("cpu")` was only used when the model ops
were `CupyOps`. If the ops are `AppleOps`, we are still passing through
the correct BLAS implementation.
* _NUMPY_OPS -> NUMPY_OPS
* `strings`: More roubust type checking of keys/IDs, coerce `int`-like types to `hash_t`
* Preserve existing public API behaviour
* Fix return type
* Replace `bool` with `bint`, rename to `_try_coerce_to_hash`, replace `id` with `hash`
* Avoid unnecessary re-encoding and re-calculation of strings and hashs respectively
* Rename variables named `hash`
Add comment on early return
* `TrainablePipe`: Add NVTX range decorator
* Annotate `TrainablePipe` subclasses with NVTX ranges
* Export function signature to allow introspection of args in tests
* Revert "Annotate `TrainablePipe` subclasses with NVTX ranges"
This reverts commit d8684f7372.
* Revert "Export function signature to allow introspection of args in tests"
This reverts commit f4405ca3ad.
* Revert "`TrainablePipe`: Add NVTX range decorator"
This reverts commit 26536eb6b8.
* Add `spacy.pipes_with_nvtx_range` pipeline callback
* Show warnings for all missing user-defined pipe functions that need to be annotated
Fix imports, typos
* Rename `DEFAULT_ANNOTATABLE_PIPE_METHODS` to `DEFAULT_NVTX_ANNOTATABLE_PIPE_METHODS`
Reorder import
* Walk model nodes directly whilst applying NVTX ranges
Ignore pipe method wrapper when applying range
* Min_max_operators
1. Modified API and Usage for spaCy website to include min_max operator
2. Modified matcher.pyx to include min_max function {n,m} and its variants
3. Modified schemas.py to include min_max validation error
4. Added test cases to test_matcher_api.py, test_matcher_logic.py and test_pattern_validation.py
* attempt to fix mypy/pydantic compat issue
* formatting
* Update spacy/tests/matcher/test_pattern_validation.py
Co-authored-by: Source-Shen <82353723+Source-Shen@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* vectors: avoid expensive comparisons between numpy ints and Python ints
* vectors: avoid failure on lists of ints
* Convert another numpy int to Python
Distinguish between vectors that are 0 vs. missing vectors when warning
about missing vectors.
Update `Doc.has_vector` to match `Span.has_vector` and
`Token.has_vector` for cases where the vocab has vectors but none of the
tokens in the container have vectors.
* Handle Russian, Ukrainian and Bulgarian
* Corrections
* Correction
* Correction to comment
* Changes based on review
* Correction
* Reverted irrelevant change in punctuation.py
* Remove unnecessary group
* Reverted accidental change
* Try cloning repo from main & master
* fixup! Try cloning repo from main & master
* fixup! fixup! Try cloning repo from main & master
* refactor clone and check for repo:branch existence
* spacing fix
* make mypy happy
* type util function
* Update spacy/cli/project/clone.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Enable flag on spacy.load: foundation for include, enable arguments.
* Enable flag on spacy.load: fixed tests.
* Enable flag on spacy.load: switched from pretrained model to empty model with added pipes for tests.
* Enable flag on spacy.load: switched to more consistent error on misspecification of component activity. Test refactoring. Added to default config.
* Enable flag on spacy.load: added support for fields not in pipeline.
* Enable flag on spacy.load: removed serialization fields from supported fields.
* Enable flag on spacy.load: removed 'enable' from config again.
* Enable flag on spacy.load: relaxed checks in _resolve_component_activation_status() to allow non-standard pipes.
* Enable flag on spacy.load: fixed relaxed checks for _resolve_component_activation_status() to allow non-standard pipes. Extended tests.
* Enable flag on spacy.load: comments w.r.t. resolution workarounds.
* Enable flag on spacy.load: remove include fields. Update website docs.
* Enable flag on spacy.load: updates w.r.t. changes in master.
* Implement Doc.from_json(): update docstrings.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): remove newline.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): change error message for E1038.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Enable flag on spacy.load: wrapped docstring for _resolve_component_status() at 80 chars.
* Enable flag on spacy.load: changed exmples for enable flag.
* Remove newline.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix docstring for Language._resolve_component_status().
* Rename E1038 to E1042.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* account for NER labels with a hyphen in the name
* cleanup
* fix docstring
* add return type to helper method
* shorter method and few more occurrences
* user helper method across repo
* fix circular import
* partial revert to avoid circular import
