Closes#2203. Closes#3268.
Lemmas set from outside the `Morphology` class were being overwritten. The result was especially confusing when deserialising, as it meant some lemmas could change when storing and retrieving a `Doc` object.
This PR applies two fixes:
1) When we go to set the lemma in the `Morphology` class, first check whether a lemma is already set. If so, don't overwrite.
2) When we load with `doc.from_array()`, take care to apply the `TAG` field first. This allows other fields to overwrite the `TAG` implied properties, if they're provided explicitly (e.g. the `LEMMA`).
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
<!--- Provide a general summary of your changes in the title. -->
## Description
This PR adds the abilility to override custom extension attributes during merging. This will only work for attributes that are writable, i.e. attributes registered with a default value like `default=False` or attribute that have both a getter *and* a setter implemented.
```python
Token.set_extension('is_musician', default=False)
doc = nlp("I like David Bowie.")
with doc.retokenize() as retokenizer:
attrs = {"LEMMA": "David Bowie", "_": {"is_musician": True}}
retokenizer.merge(doc[2:4], attrs=attrs)
assert doc[2].text == "David Bowie"
assert doc[2].lemma_ == "David Bowie"
assert doc[2]._.is_musician
```
### Types of change
enhancement
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* splitting up latin unicode interval
* removing hyphen as infix for French
* adding failing test for issue 1235
* test for issue #3002 which now works
* partial fix for issue #2070
* keep the hyphen as infix for French (as it was)
* restore french expressions with hyphen as infix (as it was)
* added succeeding unit test for Issue #2656
* Fix issue #2822 with custom Italian exception
* Fix issue #2926 by allowing numbers right before infix /
* splitting up latin unicode interval
* removing hyphen as infix for French
* adding failing test for issue 1235
* test for issue #3002 which now works
* partial fix for issue #2070
* keep the hyphen as infix for French (as it was)
* restore french expressions with hyphen as infix (as it was)
* added succeeding unit test for Issue #2656
* Fix issue #2822 with custom Italian exception
* Fix issue #2926 by allowing numbers right before infix /
* remove duplicate
* remove xfail for Issue #2179 fixed by Matt
* adjust documentation and remove reference to regex lib
* Fix matching on extension attrs and predicates
* Fix detection of match_id when using extension attributes. The match
ID is stored as the last entry in the pattern. We were checking for this
with nr_attr == 0, which didn't account for extension attributes.
* Fix handling of predicates. The wrong count was being passed through,
so even patterns that didn't have a predicate were being checked.
* Fix regex pattern
* Fix matcher set value test
* replace unicode categories with raw list of code points
* simplifying ranges
* fixing variable length quotes
* removing redundant regular expression
* small cleanup of regexp notations
* quotes and alpha as ranges instead of alterations
* removed most regexp dependencies and features
* exponential backtracking - unit tests
* rewrote expression with pathological backtracking
* disabling double hyphen tests for now
* test additional variants of repeating punctuation
* remove regex and redundant backslashes from load_reddit script
* small typo fixes
* disable double punctuation test for russian
* clean up old comments
* format block code
* final cleanup
* naming consistency
* french strings as unicode for python 2 support
* french regular expression case insensitive
This PR adds a test for an untested case of `Span.get_lca_matrix`, and fixes a bug for that scenario, which I introduced in [this PR](https://github.com/explosion/spaCy/pull/3089) (sorry!).
## Description
The previous implementation of get_lca_matrix was failing for the case `doc[j:k].get_lca_matrix()` where `j > 0`. A test has been added for this case and the bug has been fixed.
### Types of change
Bug fix
## Checklist
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
