Commit Graph

17 Commits

Author SHA1 Message Date
adrianeboyd
82159b5c19 Updates/bugfixes for NER/IOB converters (#4186)
* Updates/bugfixes for NER/IOB converters

* Converter formats `ner` and `iob` use autodetect to choose a converter if
  possible

* `iob2json` is reverted to handle sentence-per-line data like
  `word1|pos1|ent1 word2|pos2|ent2`

  * Fix bug in `merge_sentences()` so the second sentence in each batch isn't
    skipped

* `conll_ner2json` is made more general so it can handle more formats with
  whitespace-separated columns

  * Supports all formats where the first column is the token and the final
    column is the IOB tag; if present, the second column is the POS tag

  * As in CoNLL 2003 NER, blank lines separate sentences, `-DOCSTART- -X- O O`
    separates documents

  * Add option for segmenting sentences (new flag `-s`)

  * Parser-based sentence segmentation with a provided model, otherwise with
    sentencizer (new option `-b` to specify model)

  * Can group sentences into documents with `n_sents` as long as sentence
    segmentation is available

  * Only applies automatic segmentation when there are no existing delimiters
    in the data

* Provide info about settings applied during conversion with warnings and
  suggestions if settings conflict or might not be not optimal.

* Add tests for common formats

* Add '(default)' back to docs for -c auto

* Add document count back to output

* Revert changes to converter output message

* Use explicit tabs in convert CLI test data

* Adjust/add messages for n_sents=1 default

* Add sample NER data to training examples

* Update README

* Add links in docs to example NER data

* Define msg within converters
2019-08-29 12:04:01 +02:00
Ines Montani
aea1c93a05 Replace cytoolz.partition_all with util.minibatch 2019-05-11 21:12:09 +02:00
Ines Montani
0bf6441863 Fix .iob converter (closes #3620) 2019-05-11 19:15:26 +02:00
Ines Montani
5d0b60999d Merge branch 'master' into develop 2019-02-07 20:54:07 +01:00
Gavriel Loria
9a5003d5c8 iob converter: add 'exception' for error 'too many values' (#3159)
* added contributor agreement

* issue #3128 throw exception on bad IOB/2 formatting

* Update spacy/cli/converters/iob2json.py with ValueError

Co-Authored-By: gavrieltal <gtloria@protonmail.com>
2019-01-16 13:44:16 +01:00
Ines Montani
ae880ef912 Tidy up merge conflict leftovers 2018-12-18 13:58:30 +01:00
Ines Montani
61d09c481b Merge branch 'master' into develop 2018-12-18 13:48:10 +01:00
Matthew Honnibal
0a60726215 Remove cytoolz usage in CLI 2018-12-06 20:37:00 +01:00
Gavriel Loria
9c8c4287bf Accept iob2 and allow generic whitespace (#2999)
* accept non-pipe whitespace as delimiter; allow iob2 filename

* added small documentation note for IOB2 allowance

* added contributor agreement
2018-12-06 15:50:25 +01:00
Ines Montani
5b2741f751 Remove unused cytoolz / itertools imports 2018-12-03 02:12:07 +01:00
Ines Montani
37c7c85a86 💫 New JSON helpers, training data internals & CLI rewrite (#2932)
* Support nowrap setting in util.prints

* Tidy up and fix whitespace

* Simplify script and use read_jsonl helper

* Add JSON schemas (see #2928)

* Deprecate Doc.print_tree

Will be replaced with Doc.to_json, which will produce a unified format

* Add Doc.to_json() method (see #2928)

Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.

* Remove outdated test

* Add write_json and write_jsonl helpers

* WIP: Update spacy train

* Tidy up spacy train

* WIP: Use wasabi for formatting

* Add GoldParse helpers for JSON format

* WIP: add debug-data command

* Fix typo

* Add missing import

* Update wasabi pin

* Add missing import

* 💫 Refactor CLI (#2943)

To be merged into #2932.

## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)

### Types of change
enhancement

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Update wasabi pin

* Delete old test

* Update errors

* Fix typo

* Tidy up and format remaining code

* Fix formatting

* Improve formatting of messages

* Auto-format remaining code

* Add tok2vec stuff to spacy.train

* Fix typo

* Update wasabi pin

* Fix path checks for when train() is called as function

* Reformat and tidy up pretrain script

* Update argument annotations

* Raise error if model language doesn't match lang

* Document new train command
2018-11-30 20:16:14 +01:00
Ines Montani
3141e04822
💫 New system for error messages and warnings (#2163)
* Add spacy.errors module

* Update deprecation and user warnings

* Replace errors and asserts with new error message system

* Remove redundant asserts

* Fix whitespace

* Add messages for print/util.prints statements

* Fix typo

* Fix typos

* Move CLI messages to spacy.cli._messages

* Add decorator to display error code with message

An implementation like this is nice because it only modifies the string when it's retrieved from the containing class – so we don't have to worry about manipulating tracebacks etc.

* Remove unused link in spacy.about

* Update errors for invalid pipeline components

* Improve error for unknown factories

* Add displaCy warnings

* Update formatting consistency

* Move error message to spacy.errors

* Update errors and check if doc returned by component is None
2018-04-03 15:50:31 +02:00
Matthew Honnibal
f942903429 Improve sentence merging in iob2json 2017-10-02 17:02:10 +02:00
Matthew Honnibal
31681d20e0 Fix concatenation in iob2json converter 2017-10-02 16:50:26 +02:00
Matthew Honnibal
5cf47b847b Handle iob with no tag in converter 2017-05-28 08:11:39 -05:00
Matthew Honnibal
5a87bcf35f Fix converters 2017-05-26 11:32:34 -05:00
Matthew Honnibal
08766240c3 Add incomplete iob converter 2017-05-19 13:27:51 -05:00