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7241 Commits

Author SHA1 Message Date
Matthw Honnibal
42e1109def Support option to not batch by number of words 2020-07-08 11:26:54 +02:00
Ines Montani
8cb7f9ccff
Improve assets and DVC handling (#5719) 
* Improve assets and DVC handling

* Remove outdated comment [ci skip]
 2020-07-07 20:51:50 +02:00
Sofie Van Landeghem
a39a110c4e
Few more Example unit tests (#5720) 
* small fixes in Example, UX

* add gold tests for aligned_spans and get_aligned_parse

* sentencizer unnecessary
 2020-07-07 18:46:00 +02:00
Matthw Honnibal
433dc3c9c9 Simplify PrecomputableAffine slightly 2020-07-07 17:22:47 +02:00
Matthw Honnibal
a4164f67ca Don't normalize gradients 2020-07-07 17:21:58 +02:00
Matthw Honnibal
8177f25b6c Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-07 17:21:10 +02:00
Ines Montani
fa00a85828
Merge pull request #5715 from explosion/chore/tidy-regression-tests 2020-07-07 11:22:07 +02:00
Matthw Honnibal
d1fd3438c3 Add dropout to parser hidden layer 2020-07-07 01:38:15 +02:00
Matthw Honnibal
f25761e513 Dont randomize cuts in parser 2020-07-06 17:51:25 +02:00
Matthw Honnibal
709fc5e4ad Clarify dropout and seed in Tok2Vec 2020-07-06 17:50:21 +02:00
Matthew Honnibal
19d42f42de Set version to v3.0.0a2 2020-07-06 17:43:12 +02:00
Matthew Honnibal
cc477be952
Improve gold-standard alignment (#5711) 
* Remove previous alignment

* Implement better alignment, using ragged data structure

* Use pytokenizations for alignment

* Fixes

* Fixes

* Fix overlapping entities in alignment

* Fix align split_sents

* Update test

* Commit align.py

* Try to appease setuptools

* Fix flake8

* use realistic entities for testing

* Update tests for better alignment

* Improve alignment heuristic

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
 2020-07-06 17:39:31 +02:00
Ines Montani
b6deef80f8 Fix class to pickling works as expected 2020-07-06 16:43:45 +02:00
Ines Montani
fa261d09e8 Add alternative CLI option 2020-07-06 15:57:38 +02:00
Adriane Boyd
c67fc6aa5b
Make docs_to_json backwards-compatible with v2 (#5714) 
* In `spacy convert -t json` output the JSON docs wrapped in a list

* Add back token-level `ner` alongside the doc-level `entities`
 2020-07-06 14:15:00 +02:00
Ines Montani
5b7b2a498d Tidy up and merge regression tests 2020-07-06 14:05:59 +02:00
Ines Montani
412dbb1f38
Remove dead and/or deprecated code (#5710) 
* Remove dead and/or deprecated code

* Remove n_threads

Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
 2020-07-06 13:06:25 +02:00
Sofie Van Landeghem
fcbf899b08
Feature/example only (#5707) 
* remove _convert_examples

* fix test_gold, raise TypeError if tuples are used instead of Example's

* throwing proper errors when the wrong type of objects are passed

* fix deprectated format in tests

* fix deprectated format in parser tests

* fix tests for NEL, morph, senter, tagger, textcat

* update regression tests with new Example format

* use make_doc

* more fixes to nlp.update calls

* few more small fixes for rehearse and evaluate

* only import ml_datasets if really necessary
 2020-07-06 13:02:36 +02:00
Matthw Honnibal
3f6f087113 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-04 23:52:12 +02:00
Matthw Honnibal
5642507823 Fix has_unknown_spaces in Doc.copy 2020-07-04 23:52:02 +02:00
Matthw Honnibal
8870a6ded7 Specify seeds in HashEmbed 2020-07-04 23:51:49 +02:00
Ines Montani
37c3bb35e2 Auto-format 2020-07-04 16:25:34 +02:00
Ines Montani
abd173937f Auto-format and update URL 2020-07-04 14:23:44 +02:00
Ines Montani
99aff16d60 Make argument shortcut consistent 2020-07-04 14:23:32 +02:00
Matthew Honnibal
2bd1bf81f1
Refactor pretrain and support character-based objective for v3 (#5706) 
* Start adding character-based stuff

* Start adding character-based objective

* Start adding character-based stuff

* Start adding character-based objective

* Remove outdated comment

* Update pretraining models

* Add/fix character-based multi-task models

* Refactor pretrain and support character-based objective

* Update pretrain config

* Remove unused

* Fix flake8 errors

* Clean up imports

* Format

* Format

* Update Thinc version

* Raise error if vectors objective but no vectors
 2020-07-03 17:57:28 +02:00
Ines Montani
84fb3a3fb3 Auto-format and fix tuple 2020-07-03 15:20:10 +02:00
Matthew Honnibal
e1b3e8ee11 Set version to v3.0.0a1 2020-07-03 13:21:08 +02:00
Matthew Honnibal
a902b5f217
Record whether Doc objects are built from known spacing (#5697) 
* Tell convert CLI to store user data for Doc

* Remove assert

* Add has_unknwon_spaces flag on Doc

* Do not tokenize docs with unknown spaces in Corpus

* Handle conversion of unknown spaces in Example

* Fixes

* Fixes

* Draft has_known_spaces support in DocBin

* Add test for serialize has_unknown_spaces

* Fix DocBin serialization when has_unknown_spaces

* Use serialization in test
 2020-07-03 12:58:16 +02:00
Adriane Boyd
abad56db7d
Add conllu2docs converter (#5704) 
Add conllu2docs converter adapted from conllu2json converter
 2020-07-03 12:54:32 +02:00
Jan Jessewitsch
e4dcac4a4b
Merging multiple docs into one (#5032) 
* Add static method to Doc to allow merging of multiple docs.

* Add error description for the error that occurs if docs with different
vocabs (from different languages) are merged in Doc.from_docs().

* Add test for Doc.from_docs() implementation.

* Fix using numpy's concatenate in Doc.from_docs.

* Replace typing's type annotations in from_docs.

* Simply remove type annotations in from_docs.

* Add documentation for Doc.from_docs to api.

* Simplify from_docs, its test and the api doc for codebase consistency.

* Fix merging of Doc objects that end with whitespaces (Achieved by simply not setting the SPACY attribute on whitespace tokens). Remove two unnecessary imports of attributes.

* Add merging of user data from Doc objects in from_docs. Add user data test case to corresponding test. Add applicable warning messages.

* Fix incorrect setting of tokens idx by using concatenated spaces (again). Add test case to corresponding test.

* Add MORPH to attrs

* Update warnings calls

* Remove out-dated error from merge

* Rename space_delimiter to ensure_whitespace

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2020-07-03 11:32:42 +02:00
Sofie Van Landeghem
41b65fd0f8
fix to pretrain script (#5699) 
* fix to pretrain script

* remove unnecessary import
 2020-07-02 21:48:01 +02:00
Adriane Boyd
a723fa02a1
DocBin: add version number, missing attributes and strings (#5685) 
* Add version number to DocBin

Add a version number to DocBin for future use.

* Add POS to all attributes in DocBin

* Add morph string to strings in DocBin

* Update DocBin API

* Add string for ENT_KB_ID in DocBin
 2020-07-02 17:41:50 +02:00
Ines Montani
d36632553a
Merge pull request #5688 from explosion/remove-deprecated 
Remove deprecated methods: Doc.print_tree, Doc.merge, Span.merge
 2020-07-02 15:10:30 +02:00
Ines Montani
8a5b9a6d5f
Merge pull request #5693 from svlandeg/bugfix/nel-v3 2020-07-02 14:45:46 +02:00
Ines Montani
ee8a830248
Merge pull request #5687 from svlandeg/bugfix/init-model 
Fixing init_model
 2020-07-02 14:10:28 +02:00
svlandeg
04ed4d60a8 raise error when links are not aligned to tokens 2020-07-02 13:57:35 +02:00
svlandeg
f503817623 fix parsing entity links in new gold format 2020-07-02 13:48:11 +02:00
Ines Montani
60c2695131 Remove deprecated methods 2020-07-01 22:33:39 +02:00
Ines Montani
fe4cfd0632 Start updating website for v3 [ci skip] 2020-07-01 21:26:39 +02:00
svlandeg
a30bc77415 bugfixing prune_vectors and vectors_loc 2020-07-01 21:00:47 +02:00
Matthw Honnibal
94a0cf46fd Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 18:45:45 +02:00
Matthw Honnibal
6a0a27e5c2 Fix max_steps 2020-07-01 18:08:14 +02:00
Ines Montani
8d90e44d74 Fix title 2020-07-01 15:38:01 +02:00
Ines Montani
8fb574900a Update parent package and version 2020-07-01 15:35:23 +02:00
Matthew Honnibal
0ada186dda Set version to v3.0.0.dev14 2020-07-01 15:31:04 +02:00
Matthw Honnibal
cb51bb637b Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 15:17:27 +02:00
Matthw Honnibal
7734cbc34d Set batch size in begin_training 2020-07-01 15:16:59 +02:00
Matthw Honnibal
1f7709e9a6 Improve max length check in corpus 2020-07-01 15:16:43 +02:00
Matthw Honnibal
2fa56484b2 Fix eval batch size 2020-07-01 15:16:25 +02:00
Matthw Honnibal
c5d12d1a22 Allow batch size to be set for evaluation in spacy train 2020-07-01 15:04:36 +02:00
Matthw Honnibal
f5532757a3 Filter out 0-length examples in Corpus 2020-07-01 15:02:37 +02:00
Ines Montani
bc87ba97e0
Merge pull request #5681 from svlandeg/bugfix/exec-cwd 2020-07-01 14:13:19 +02:00
Matthw Honnibal
52338a07bb Set version to v3.0.0.dev13 2020-07-01 02:49:17 +02:00
Matthw Honnibal
fa6d473390 Fix parser maxout_pieces=1 2020-07-01 02:48:58 +02:00
Matthw Honnibal
35af5819e0 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-07-01 01:03:39 +02:00
Matthw Honnibal
0d6edf5397 Clean up debug code in transition_system 2020-07-01 01:03:20 +02:00
Matthw Honnibal
a1b6add4c8 Fix parser gold cutting and gradient normalization 2020-07-01 01:02:58 +02:00
Matthw Honnibal
8c5a88e777 Fix per-epoch shuffling 2020-07-01 01:02:35 +02:00
svlandeg
a7d547c65e small fix 2020-06-30 21:56:17 +02:00
svlandeg
8eca7e995e add try-except to git commands to get an informative warning 2020-06-30 21:53:40 +02:00
Ines Montani
b032943c34 Fix funny printing again 2020-06-30 21:33:41 +02:00
Matthw Honnibal
d525552979 Fix efficiency of parser backprop_nonlinearity 2020-06-30 21:22:54 +02:00
Ines Montani
d64644d9d1 Adjust auto-formatting 2020-06-30 20:36:30 +02:00
Ines Montani
6da3500728 Fix command substitution 2020-06-30 20:35:51 +02:00
svlandeg
e7aff9c5fc bugfix exec usage in dvc.yaml 2020-06-30 18:51:20 +02:00
svlandeg
60f97bc519 add custom warning when run_command fails 2020-06-30 17:28:43 +02:00
svlandeg
39953c7c60 fix print_run_help with new arg order 2020-06-30 17:28:09 +02:00
svlandeg
cd632d8ec2 move folder for exec argument one up 2020-06-30 17:19:36 +02:00
svlandeg
1ae6fa2554 move subcommand one place up as project_dir has default 2020-06-30 16:04:53 +02:00
svlandeg
a46b76f188 use current working dir as default throughout 2020-06-30 15:39:24 +02:00
svlandeg
b228111925 fix funny printing 2020-06-30 14:54:45 +02:00
Ines Montani
8e20505970 Resolve within working_dir context manager 2020-06-30 13:29:45 +02:00
Ines Montani
72175b5c60 Update project command 2020-06-30 13:17:26 +02:00
Ines Montani
c5e31acb06 Make working_dir yield absolute cwd path 2020-06-30 13:17:14 +02:00
Ines Montani
3aca404735 Make run_command take string and list 2020-06-30 13:17:00 +02:00
Ines Montani
7584fdafec Fix typo 2020-06-30 12:59:13 +02:00
svlandeg
140c4896a0 split_command util function 2020-06-30 12:54:15 +02:00
Matthw Honnibal
57e09747dc Improve efficiency of get_oracle_sequences 2020-06-30 11:50:48 +02:00
Matthw Honnibal
233945bfe0 Fix init for padding 2020-06-30 11:50:24 +02:00
svlandeg
d23be563eb remove redundant setting of no_args_is_help 2020-06-30 11:23:35 +02:00
svlandeg
b311ce982f Merge remote-tracking branch 'upstream/develop' into fix/small-edits 
# Conflicts:
#	spacy/cli/project.py
 2020-06-30 11:17:31 +02:00
svlandeg
7e4cbda89a fix project_init for relative path 2020-06-30 11:09:53 +02:00
Matthw Honnibal
85ed5730a2 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-06-30 01:14:16 +02:00
Ines Montani
e8033df81e Also handle python3 and pip3 2020-06-29 20:30:42 +02:00
Ines Montani
c874dde66c Show help on "spacy project" 2020-06-29 20:11:34 +02:00
Ines Montani
1d2c646e57 Fix init and remove .dvc/plots 2020-06-29 20:07:21 +02:00
Matthw Honnibal
5bed6fc431 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2020-06-29 19:55:24 +02:00
svlandeg
1176783310 fix one more shlex.split 2020-06-29 18:37:42 +02:00
svlandeg
ff233d5743 print details on error msg (e.g. PermissionError on specific file) 2020-06-29 18:22:33 +02:00
svlandeg
894b8e7ff6 throw warning (instead of crashing) when temp dir can't be cleaned 2020-06-29 18:16:39 +02:00
svlandeg
efe7eb71f2 create subfolder in working dir 2020-06-29 17:46:08 +02:00
svlandeg
3487214ba1 fix shlex.split for non-posix 2020-06-29 17:45:47 +02:00
Ines Montani
126050f259 Improve asset fetching 
Get all paths first and run dvc add once so it only shows one progress bar and one combined git command (if repo is git repo)
 2020-06-29 16:55:24 +02:00
Ines Montani
7c08713baa Improve error messages 2020-06-29 16:54:47 +02:00
Ines Montani
24664efa23 Import project_run_all function 2020-06-29 16:54:19 +02:00
svlandeg
f8dddeda27 print help msg when just calling 'project' without args 2020-06-29 16:38:15 +02:00
svlandeg
bf43ebbf61 fix typo's 2020-06-29 16:32:25 +02:00
Matthew Honnibal
67928036f2 Set version to v3.0.0.dev12 2020-06-29 14:45:43 +02:00
Sofie Van Landeghem
8d3c0306e1
refactor fixes (#5664) 
* fixes in ud_train, UX for morphs

* update pyproject with new version of thinc

* fixes in debug_data script

* cleanup of old unused error messages

* remove obsolete TempErrors

* move error messages to errors.py

* add ENT_KB_ID to default DocBin serialization

* few fixes to simple_ner

* fix tags
 2020-06-29 14:33:00 +02:00
Sofie Van Landeghem
fc3cb1fa9e
NER align tests (#5656) 
* one_to_man works better. misalignment doesn't yet.

* fix tests

* restore example

* xfail alignment tests
 2020-06-29 13:59:17 +02:00