Commit Graph

235 Commits

Author SHA1 Message Date
Daniël de Kok
7351f6bbeb Update thinc dependency to 9.0.0.dev4 2024-01-16 15:56:09 +01:00
Daniël de Kok
50c5e9a2dd Merge remote-tracking branch 'upstream/master' into sync-v4-master-20230612 2023-06-12 15:57:10 +02:00
Basile Dura
f96b9e03df
build: bump typer version to accept >=0.3<0.10 (#12631) 2023-05-15 08:06:58 +02:00
Adriane Boyd
476a2e7a0a
Allow cupy 12.0 for extras (#12490) 2023-03-31 13:48:15 +02:00
Paul O'Leary McCann
e656189ec3
Change GPU efficient textcat to use CNN, not BOW in generated configs (#11900)
* Change GPU efficient textcat to use CNN, not BOW

If you generate a config with a textcat component using GPU
(transformers), the defaut option (efficiency) uses a BOW architecture,
which does not use tok2vec features. While that can make sense as part
of a larger pipeline, in the case of just a transformer and a textcat,
that means the transformer is doing a lot of work for no purpose.

This changes it so that the CNN architecture is used instead. It could
also be changed to be the same as the accuracy config, which uses the
ensemble architecture.

* Add the transformer when using a textcat with GPU

* Switch ubuntu-latest to ubuntu-20.04 in main tests (#11928)

* Switch ubuntu-latest to ubuntu-20.04 in main tests

* Only use 20.04 for 3.6

* Require thinc v8.1.7

* Require thinc v8.1.8

* Break up longer expression

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-03-07 17:47:45 +01:00
Adriane Boyd
ec45f704b1
Drop python 3.6/3.7, remove unneeded compat (#12187)
* Drop python 3.6/3.7, remove unneeded compat

* Remove unused import

* Minimal python 3.8+ docs updates
2023-01-27 15:48:20 +01:00
Adriane Boyd
8548d4d16e Merge remote-tracking branch 'upstream/master' into update-v4-from-master-1 2023-01-27 08:29:09 +01:00
Daniël de Kok
b052b1b47f
Fix batching regression (#12094)
* Fix batching regression

Some time ago, the spaCy v4 branch switched to the new Thinc v9
schedule. However, this introduced an error in how batching is handed.

In the PR, the batchers were changed to keep track of their step,
so that the step can be passed to the schedule. However, the issue
is that the training loop repeatedly calls the batching functions
(rather than using an infinite generator/iterator). So, the step and
therefore the schedule would be reset each epoch. Before the schedule
switch we didn't have this issue, because the old schedules were
stateful.

This PR fixes this issue by reverting the batching functions to use
a (stateful) generator. Their registry functions do accept a `Schedule`
and we convert `Schedule`s to generators.

* Update batcher docs

* Docstring fixes

* Make minibatch take iterables again as well

* Bump thinc requirement to 9.0.0.dev2

* Use type declaration

* Convert another comment into a proper type declaration
2023-01-18 18:28:30 +01:00
Albert Villanova del Moral
25373d8e8e
Fix required maximum version of typing-extensions (#12036)
* Fix required maximum version of typing-extensions

* Restrict to <4.5.0, sync minimum pin

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2023-01-13 10:44:02 +01:00
svlandeg
b2fd9490e3 Merge branch 'copy_master' into copy_v4 2023-01-11 18:40:55 +01:00
Adriane Boyd
e0168ccce9
Allow spacy-transformers v1.2.x in transformers extra (#12092) 2023-01-11 13:54:58 +01:00
svlandeg
6852adc8b7 Merge branch 'copy_master' into copy_v4 2023-01-03 13:34:05 +01:00
Adriane Boyd
ef9e504eac
Rename modified textcat scorer to v2 (#11971)
As a follow-up to #11696, rename the modified scorer to v2 and move the
v1 scorer to `spacy-legacy`.
2022-12-29 14:01:08 +01:00
Daniël de Kok
20b63943f5
Adjust to new Schedule class and pass scores to Optimizer (#12008)
* Adjust to new `Schedule` class and pass scores to `Optimizer`

Requires https://github.com/explosion/thinc/pull/804

* Bump minimum Thinc requirement to 9.0.0.dev1
2022-12-29 08:03:24 +01:00
Adriane Boyd
64d2d27c5d
Add classifier for python 3.11 (#12013) 2022-12-22 10:53:16 +01:00
Daniël de Kok
207565a788 Merge remote-tracking branch 'upstream/master' into chore/v4-merge-master-20221222 2022-12-22 10:08:54 +01:00
Daniël de Kok
f9308aae13
Fix v4 branch to build against Thinc v9 (#11921)
* Move `thinc.extra.search` to `spacy.pipeline._parser_internals`

Backport of:
https://github.com/explosion/spaCy/pull/11317

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>

* Replace references to `thinc.backends.linalg` with `CBlas`

Backport of:
https://github.com/explosion/spaCy/pull/11292

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>

* Use cross entropy from `thinc.legacy`

* Require thinc>=9.0.0.dev0,<9.1.0

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>
2022-12-17 14:32:19 +01:00
Adriane Boyd
8c291ace0c
Extend to wasabi v1.1 (#11945)
* Extend to wasabi v1.1

* Temporarily run mypy and tests with newest wasabi

* Temporarily skip check requirements test

* Revert "Temporarily skip check requirements test"

This reverts commit 44f4ce20a8.

* Revert "Temporarily run mypy and tests with newest wasabi"

This reverts commit e677a2257c.
2022-12-12 08:38:36 +01:00
svlandeg
04fea09ffd Merge branch 'copy_master' into copy_v4 2022-12-05 08:56:15 +01:00
Adriane Boyd
1ebe7db07c
Support local filesystem remotes for projects (#11762)
* Support local filesystem remotes for projects

* Fix support for local filesystem remotes for projects
  * Use `FluidPath` instead of `Pathy` to support both filesystem and
    remote paths
  * Create missing parent directories if required for local filesystem
  * Add a more general `_file_exists` method to support both `Pathy`,
    `Path`, and `smart_open`-compatible URLs
* Add explicit `smart_open` dependency starting with support for
  `compression` flag
* Update `pathy` dependency to exclude older versions that aren't
  compatible with required `smart_open` version
* Update docs to refer to `Pathy` instead of `smart_open` for project
  remotes (technically you can still push to any `smart_open`-compatible
  path but you can't pull from them)
* Add tests for local filesystem remotes

* Update pathy for general BlobStat sorting

* Add import

* Remove _file_exists since only Pathy remotes are supported

* Format CLI docs

* Clean up merge
2022-11-29 11:40:58 +01:00
Adriane Boyd
681ec20914
Add smart_open requirement, update deprecated options (#11864)
* Switch from deprecated `ignore_ext` to `compression`
* Add upload/download test for local files
2022-11-25 13:00:57 +01:00
Paul O'Leary McCann
b76222e56a
Raise Typer limit (#11720)
* Raise typer limit to <0.7.0

* Raise limit to <0.8.0
2022-11-07 08:11:55 +01:00
Adriane Boyd
103b24fb25 Merge remote-tracking branch 'upstream/master' into chore/update-v4-from-master 2022-10-21 09:13:32 +02:00
Adriane Boyd
6b5a3e7219
Extend to pydantic v1.10 (#11635)
* Update types in `spacy.schemas` for updated pydantic+mypy
2022-10-14 08:16:49 +02:00
svlandeg
e3027c65b8 Merge branch 'copy_develop' into copy_v4 2022-10-03 14:12:16 +02:00
Adriane Boyd
6be6913ba5
Update cupy extras (#11279)
* Update cupy extras:

* Extend to v11
* Add `cupy-cuda11x` and `cupy-wheel`
* Update quickstart to use `cupy-wheel` for CUDA 10.2+

* Rename cuda-wheel to cuda-autodetect, remove repeated CUDA in menu
2022-09-13 09:04:53 +02:00
shademe
977b847cce
Merge branch 'develop' into merge-develop-into-v4 2022-09-07 11:35:47 +02:00
Adriane Boyd
4bce8fa755
Remove setup_requires from setup.cfg (#11384)
* Remove setup_requires from setup.cfg

* Update requirements test to ignore cython in setup.cfg
2022-08-29 13:23:24 +02:00
Edward
6723d76f24
Add ConsoleLogger.v2 (#11214)
* Init

* Change logger to ConsoleLogger.v2

* adjust naming

* More naming adjustments

* Fix output_file reference error

* ignore type

* Add basic test for logger

* Hopefully fix mypy issue

* mypy ignore line

* Update mypy line

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update test method name

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Change file saving logic

* Fix finalize method

* increase spacy-legacy version in requirements

* Update docs

* small adjustments

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-08-29 10:23:05 +02:00
Paul O'Leary McCann
7a2c58864c
Move deps outside explosion to "third-party" (#11381) 2022-08-26 10:23:10 +02:00
Adriane Boyd
2a558a7cdc
Switch to mecab-ko as default Korean tokenizer (#11294)
* Switch to mecab-ko as default Korean tokenizer

Switch to the (confusingly-named) mecab-ko python module for default Korean
tokenization.

Maintain the previous `natto-py` tokenizer as
`spacy.KoreanNattoTokenizer.v1`.

* Temporarily run tests with mecab-ko tokenizer

* Fix types

* Fix duplicate test names

* Update requirements test

* Revert "Temporarily run tests with mecab-ko tokenizer"

This reverts commit d2083e7044.

* Add mecab_args setting, fix pickle for KoreanNattoTokenizer

* Fix length check

* Update docs

* Formatting

* Update natto-py error message

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>

Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
2022-08-26 10:11:18 +02:00
Paul O'Leary McCann
2d89dd9db8
Update natto-py version spec (#11222)
* Update natto-py version spec

* Update setup.cfg

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-07-28 07:45:02 +02:00
Adriane Boyd
66d6461c8f
Use thinc v8.1 (#11101) 2022-07-08 17:52:41 +02:00
Adriane Boyd
3bc1fe0a78
Update cupy extras (#11055)
* Add cuda116 and cuda117 extras

* Revert "remove `cuda116` extra from install widget (#11012)"

This reverts commit e7b498fb1f.

* Add cuda117 to quickstart
2022-06-30 11:24:37 +02:00
Adriane Boyd
d4e3f43639
Update thinc version to switch back to blis v0.7 (#11014) 2022-06-23 09:50:25 +02:00
Daniël de Kok
0271306f16
Use thinc-apple-ops>=0.1.0.dev0 with apple extras (#10904)
* Use thinc-apple-ops>=0.1.0.dev0 with `apple` extras

Also test with thinc-apple-ops that is at least 0.1.0.dev0.

* Check thinc-apple-ops on macOS with Python 3.10

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Use `pip install --pre` for installing thinc-apple-ops in CI

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2022-06-21 08:26:59 +02:00
Daniël de Kok
3d3fbeda9f
Update for CBlas changes in Thinc 8.1.0.dev2 (#10970) 2022-06-16 11:42:34 +02:00
Adriane Boyd
430592b3ce
Extend typing_extensions to <4.2.0 (#10899) 2022-06-02 17:22:34 +02:00
Daniël de Kok
85dd2b6c04
Parser: use C saxpy/sgemm provided by the Ops implementation (#10773)
* Parser: use C saxpy/sgemm provided by the Ops implementation

This is a backport of https://github.com/explosion/spaCy/pull/10747
from the parser refactor branch. It eliminates the explicit calls
to BLIS, instead using the saxpy/sgemm provided by the Ops
implementation.

This allows us to use Accelerate in the parser on M1 Macs (with
an updated thinc-apple-ops).

Performance of the de_core_news_lg pipe:

BLIS 0.7.0, no thinc-apple-ops:  6385 WPS
BLIS 0.7.0, thinc-apple-ops:    36455 WPS
BLIS 0.9.0, no thinc-apple-ops: 19188 WPS
BLIS 0.9.0, thinc-apple-ops:    36682 WPS
This PR, thinc-apple-ops:       38726 WPS

Performance of the de_core_news_lg pipe (only tok2vec -> parser):

BLIS 0.7.0, no thinc-apple-ops: 13907 WPS
BLIS 0.7.0, thinc-apple-ops:    73172 WPS
BLIS 0.9.0, no thinc-apple-ops: 41576 WPS
BLIS 0.9.0, thinc-apple-ops:    72569 WPS
This PR, thinc-apple-ops:       87061 WPS

* Require thinc >=8.1.0,<8.2.0

* Lower thinc lowerbound to 8.1.0.dev0

* Use best CPU ops for CBLAS when the parser model is on the GPU

* Fix another unguarded cblas() call

* Fix: use ops as a shorthand for self.model.ops

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>

Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com>
2022-05-27 11:20:52 +02:00
Richard Hudson
32954c3bcb
Fix issues for Mypy 0.950 and Pydantic 1.9.0 (#10786)
* Make changes to typing

* Correction

* Format with black

* Corrections based on review

* Bumped Thinc dependency version

* Bumped blis requirement

* Correction for older Python versions

* Update spacy/ml/models/textcat.py

Co-authored-by: Daniël de Kok <me@github.danieldk.eu>

* Corrections based on review feedback

* Readd deleted docstring line

Co-authored-by: Daniël de Kok <me@github.danieldk.eu>
2022-05-25 09:33:54 +02:00
Adriane Boyd
64602d997d
Require srsly v2.4.3+ due to buffer overflow vulnerability (#10651) 2022-04-13 11:41:40 +02:00
Lj Miranda
02dafa3a84
Add debug diff command in spaCy CLI (#10502)
* Add initial design for diff command

For now, the diffing process looks like this:
- The default config is created based from some values in the user
config (e.g. which pipeline components were used, the lang, etc.)
- The user must supply manually if it was optimized for acc/efficiency
and if pretraining was involved.

* Make diff command structure similar to siblings

* Include gpu as a user option for CLI

* Make variables more explicit

* Fix type declaration for optimize enum

* Improve docstrings for diff CLI

* Add debug-diff to website API docs

* Switch position of configs so that user config is modded

* Add markdown flag for debug diff

This commit adds a --markdown (--md) flag that allows easier
copy-pasting to Github issues. Please note that this commit is dependent
on an unreleased version of wasabi (for the time being).

For posterity, the related PR is found here: https://github.com/ines/wasabi/pull/20

* Bump version of wasabi to 0.9.1

So that we can use the add_symbols parameter.

* Apply suggestions from code review

Co-authored-by: Ines Montani <ines@ines.io>

* Update docs based on code review suggestions

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Change command name from diff -> diff-config

* Clarify when options are relevant or not

* Rerun prettier on cli.md

Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2022-04-07 10:48:45 +02:00
Adriane Boyd
88933ca878 Revert "Add click pin to avoid typer issues (#10573)"
This reverts commit 9966e08f32.
2022-03-31 14:16:21 +02:00
Adriane Boyd
9966e08f32
Add click pin to avoid typer issues (#10573) 2022-03-29 11:15:24 +02:00
Daniël de Kok
e5debc68e4
Tagger: use unnormalized probabilities for inference (#10197)
* Tagger: use unnormalized probabilities for inference

Using unnormalized softmax avoids use of the relatively expensive exp function,
which can significantly speed up non-transformer models (e.g. I got a speedup
of 27% on a German tagging + parsing pipeline).

* Add spacy.Tagger.v2 with configurable normalization

Normalization of probabilities is disabled by default to improve
performance.

* Update documentation, models, and tests to spacy.Tagger.v2

* Move Tagger.v1 to spacy-legacy

* docs/architectures: run prettier

* Unnormalized softmax is now a Softmax_v2 option

* Require thinc 8.0.14 and spacy-legacy 3.0.9
2022-03-15 14:15:31 +01:00
Paul O'Leary McCann
91acc3ea75
Fix entity linker batching (#9669)
* Partial fix of entity linker batching

* Add import

* Better name

* Add `use_gold_ents` option, docs

* Change to v2, create stub v1, update docs etc.

* Fix error type

Honestly no idea what the right type to use here is.
ConfigValidationError seems wrong. Maybe a NotImplementedError?

* Make mypy happy

* Add hacky fix for init issue

* Add legacy pipeline entity linker

* Fix references to class name

* Add __init__.py for legacy

* Attempted fix for loss issue

* Remove placeholder V1

* formatting

* slightly more interesting train data

* Handle batches with no usable examples

This adds a test for batches that have docs but not entities, and a
check in the component that detects such cases and skips the update step
as thought the batch were empty.

* Remove todo about data verification

Check for empty data was moved further up so this should be OK now - the
case in question shouldn't be possible.

* Fix gradient calculation

The model doesn't know which entities are not in the kb, so it generates
embeddings for the context of all of them.

However, the loss does know which entities aren't in the kb, and it
ignores them, as there's no sensible gradient.

This has the issue that the gradient will not be calculated for some of
the input embeddings, which causes a dimension mismatch in backprop.
That should have caused a clear error, but with numpyops it was causing
nans to happen, which is another problem that should be addressed
separately.

This commit changes the loss to give a zero gradient for entities not in
the kb.

* add failing test for v1 EL legacy architecture

* Add nasty but simple working check for legacy arch

* Clarify why init hack works the way it does

* Clarify use_gold_ents use case

* Fix use gold ents related handling

* Add tests for no gold ents and fix other tests

* Use aligned ents function (not working)

This doesn't actually work because the "aligned" ents are gold-only. But
if I have a different function that returns the intersection, *then*
this will work as desired.

* Use proper matching ent check

This changes the process when gold ents are not used so that the
intersection of ents in the pred and gold is used.

* Move get_matching_ents to Example

* Use model attribute to check for legacy arch

* Rename flag

* bump spacy-legacy to lower 3.0.9

Co-authored-by: svlandeg <svlandeg@github.com>
2022-03-04 09:17:36 +01:00
Adriane Boyd
39f1b13e77
Update sudachipy extras (#10072)
By @polm, redone from #9917 after incorrect (reverted) rebase.

`sudachipy>=0.5.2` is needed for newer dictionaries. `sudachipy<0.6.0`
is kept for users who might still prefer the older version, in
particular to be able to compile it without rust.
2022-01-17 11:48:39 +01:00
Adriane Boyd
add52935ff
Revert "Bump sudachipy version (#9917)" (#10071)
This reverts commit 58bdd8607b.
2022-01-17 10:38:37 +01:00
Paul O'Leary McCann
58bdd8607b
Bump sudachipy version (#9917)
* Edited Slovenian stop words list (#9707)

* Noun chunks for Italian (#9662)

* added it vocab

* copied portuguese

* added possessive determiner

* added conjed Nps

* added nmoded Nps

* test misc

* more examples

* fixed typo

* fixed parenth

* fixed comma

* comma fix

* added syntax iters

* fix some index problems

* fixed index

* corrected heads for test case

* fixed tets case

* fixed determiner gender

* cleaned left over

* added example with apostophe

* French NP review (#9667)

* adapted from pt

* added basic tests

* added fr vocab

* fixed noun chunks

* more examples

* typo fix

* changed naming

* changed the naming

* typo fix

* Add Japanese kana characters to default exceptions (fix #9693) (#9742)

This includes the main kana, or phonetic characters, used in Japanese.

There are some supplemental kana blocks in Unicode outside the BMP that
could also be included, but because their actual use is rare I omitted
them for now, but maybe they should be added. The omitted blocks are:

- Kana Supplement
- Kana Extended (A and B)
- Small Kana Extension

* Remove NER words from stop words in Norwegian (#9820)

Default stop words in Norwegian bokmål (nb) in Spacy contain important entities, e.g. France, Germany, Russia, Sweden and USA, police district, important units of time, e.g. months and days of the week, and organisations.

Nobody expects their presence among the default stop words. There is a danger of users complying with the general recommendation of filtering out stop words, while being unaware of filtering out important entities from their data.

See explanation in https://github.com/explosion/spaCy/issues/3052#issuecomment-986756711 and comment https://github.com/explosion/spaCy/issues/3052#issuecomment-986951831

* Bump sudachipy version

* Update sudachipy versions

* Bump versions

Bumping to the most recent dictionary just to keep thing current.
Bumping sudachipy to 5.2 because older versions don't support recent
dictionaries.

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Duygu Altinok <duygu@explosion.ai>
Co-authored-by: Haakon Meland Eriksen <haakon.eriksen@far.no>
2022-01-17 08:16:22 +01:00
Adriane Boyd
18e5638af0
Extend cupy to v10.x (#9911)
* Add extra for `cupy-cuda115`
2021-12-20 15:48:35 +01:00