* Add `ConsoleLogger.v3`
This addition expands the progress bar feature to count up the training/distillation steps to either the next evaluation pass or the maximum number of steps.
* Rename progress bar types
* Add defaults to docs
Minor fixes
* Move comment
* Minor punctuation fixes
* Explicitly check for `None` when validating progress bar type
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
* Convert all individual values explicitly to uint64 for array-based doc representations
* Temporarily test with latest numpy v1.24.0rc
* Remove unnecessary conversion from attr_t
* Reduce number of individual casts
* Convert specifically from int32 to uint64
* Revert "Temporarily test with latest numpy v1.24.0rc"
This reverts commit eb0e3c5006.
* Also use int32 in tests
Strings in replacement nodes where not added to the `StringStore`
when `EditTreeLemmatizer` was initialized from a set of labels. The
corresponding test did not capture this because it added the strings
through the examples that were passed to the initialization.
This change fixes both this bug in the initialization as the 'shadowing'
of the bug in the test.
If you don't have spacy-transformers installed, but try to use `init
config` with the GPU flag, you'll get an error. The issue is that the
`use_transformers` flag in the config is conflated with the GPU flag,
and then there's an attempt to access transformers config info that may
not exist.
There may be a better way to do this, but this stops the error.
* Support local filesystem remotes for projects
* Fix support for local filesystem remotes for projects
* Use `FluidPath` instead of `Pathy` to support both filesystem and
remote paths
* Create missing parent directories if required for local filesystem
* Add a more general `_file_exists` method to support both `Pathy`,
`Path`, and `smart_open`-compatible URLs
* Add explicit `smart_open` dependency starting with support for
`compression` flag
* Update `pathy` dependency to exclude older versions that aren't
compatible with required `smart_open` version
* Update docs to refer to `Pathy` instead of `smart_open` for project
remotes (technically you can still push to any `smart_open`-compatible
path but you can't pull from them)
* Add tests for local filesystem remotes
* Update pathy for general BlobStat sorting
* Add import
* Remove _file_exists since only Pathy remotes are supported
* Format CLI docs
* Clean up merge
* pymorph2 issues #11620, #11626, #11625:
- #11620: pymorphy2_lookup
- #11626: handle multiple forms pointing to the same normal form + handling empty POS tag
- #11625: matching DET that are labelled as PRON by pymorhp2
* Move lemmatizer algorithm changes back into RussianLemmatizer
* Fix uk pymorphy3_lookup mode init
* Move and update tests for ru/uk lookup lemmatizer modes
* Fix typo
* Remove traces of previous behavior for uninflected POS
* Refactor to private generic-looking pymorphy methods
* Remove xfailed uk lemmatizer cases
* Update spacy/lang/ru/lemmatizer.py
Co-authored-by: Richard Hudson <richard@explosion.ai>
Co-authored-by: Dmytro S Lituiev <d.lituiev@gmail.com>
Co-authored-by: Richard Hudson <richard@explosion.ai>
* Add `training.before_update` callback
This callback can be used to implement training paradigms like gradual (un)freezing of components (e.g: the Transformer) after a certain number of training steps to mitigate catastrophic forgetting during fine-tuning.
* Fix type annotation, default config value
* Generalize arguments passed to the callback
* Update schema
* Pass `epoch` to callback, rename `current_step` to `step`
* Add test
* Simplify test
* Replace config string with `spacy.blank`
* Apply suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Cleanup imports
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Check textcat values for validity
* Fix error numbers
* Clean up vals reference
* Check category value validity through training
The _validate_categories is called in update, which for multilabel is
inherited from the single label component.
* Formatting
* Add equality definition for vectors
This re-uses the check from sourcing components.
* Use the equality check
* Format
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix typos, add couple of new abbreviations, remove nonbreaking spaces
* Remove space from abbreviation
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update warning, add tests for project requirements check
* Make warning more general for differences between PEP 508 and pip
* Add tests for _check_requirements
* Parameterize test
* Add fallback in requirements check, only check once
* Rename to skip_requirements_check
* Update spacy/cli/project/run.py
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
* Fix default parameters for load functions
Some load functions used SimpleFrozenList() directly instead of the
_DEFAULT_EMPTY_PIPES parameter. That mostly worked as intended, but
the changes in #11459 check for equality using identity, not value, so a
warning is incorrectly raised sometimes, as in #11706.
This change just has all the load functions use the singleton value
instead.
* Add test that there are no warnings on module-based load
This will succeed due to changes in this branch, but local tests with
the latest release failed as intended.
* Try reverting commit and see if CI changes
There is an error in CI that is probably unrelated.
Revert "Fix default parameters for load functions"
This reverts commit dc46b35687.
* Revert "Try reverting commit and see if CI changes"
This reverts commit 2514ed07ef.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update textcat scorer threshold behavior
For `textcat` (with exclusive classes) the scorer should always use a
threshold of 0.0 because there should be one predicted label per doc and
the numeric score for that particular label should not matter.
* Rename to test_textcat_multilabel_threshold
* Remove all uses of threshold for multi_label=False
* Update Scorer.score_cats API docs
* Add tests for score_cats with thresholds
* Update textcat API docs
* Fix types
* Convert threshold back to float
* Fix threshold type in docstring
* Improve formatting in Scorer API docs
* Handle docs with no entities
If a whole batch contains no entities it won't make it to the model, but
it's possible for individual Docs to have no entities. Before this
commit, those Docs would cause an error when attempting to concatenate
arrays because the dimensions didn't match.
It turns out the process of preparing the Ragged at the end of the span
maker forward was a little different from list2ragged, which just uses
the flatten function directly. Letting list2ragged do the conversion
avoids the dimension issue.
This did not come up before because in NEL demo projects it's typical
for data with no entities to be discarded before it reaches the NEL
component.
This includes a simple direct test that shows the issue and checks it's
resolved. It doesn't check if there are any downstream changes, so a
more complete test could be added. A full run was tested by adding an
example with no entities to the Emerson sample project.
* Add a blank instance to default training data in tests
Rather than adding a specific test, since not failing on instances with
no entities is basic functionality, it makes sense to add it to the
default set.
* Fix without modifying architecture
If the architecture is modified this would have to be a new version, but
this change isn't big enough to merit that.
* Fix multiple extensions and character offset
* Rename token_start/end to start/end
* Refactor Doc.from_json based on review
* Iterate over user_data items
* Only add non-empty underscore entries
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix flag handling in dvc
Prior to this commit, if a flag (--verbose or --quiet) was passed to
DVC, it would be added to the end of the generated dvc command line.
This would result in the command being interpreted as part of the actual
command to run, rather than an argument to dvc. This would result in
command lines like:
spacy project run preprocess --verbose
That would fail with an error that there's no such directory as
`--verbose`.
This change puts the flags at the front of the dvc command so that they
are interpreted correctly. It removes the `run_dvc_commands` function,
which had been reduced to just a for loop and wasn't used elsewhere.
A separate problem is that there's no way to specify the quiet behaviour
to dvc from the command line, though it's unclear if that's a bug.
* Add dvc quiet flag to docs
* Handle case in DVC where no commands are appropriate
If only have commands with no deps or outputs (admittedly unlikely), you
get a weird error about the dvc file not existing. This gives explicit
output instead.
* Add support for quiet flag
* Fix command execution
Commands are strings now because they're joined further up.
* Change enable/disable behavior so that arguments take precedence over config options. Extend error message on conflict. Add warning message in case of overwriting config option with arguments.
* Fix tests in test_serialize_pipeline.py to reflect changes to handling of enable/disable.
* Fix type issue.
* Move comment.
* Move comment.
* Issue UserWarning instead of printing wasabi message. Adjust test.
* Added pytest.warns(UserWarning) for expected warning to fix tests.
* Update warning message.
* Move type handling out of fetch_pipes_status().
* Add global variable for default value. Use id() to determine whether used values are default value.
* Fix default value for disable.
* Rename DEFAULT_PIPE_STATUS to _DEFAULT_EMPTY_PIPES.
* add punctuation to grc
Add support for special editorial punctuation that is common in ancient Greek texts. Ancient Greek texts, as found in digital and print form, have been largely edited by scholars. Restorations and improvements are normally marked with special characters that need to be handled properly by the tokenizer.
* add unit tests
* simplify regex
* move generic quotes to char classes
* rename unit test
* fix regex
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Preserve both `-` and `O` annotation in augmenters rather than relying
on `Example.to_dict`'s default support for one option outside of labeled
entity spans.
This is intended as a temporary workaround for augmenters for v3.4.x.
The behavior of `Example` and related IOB utils could be improved in the
general case for v3.5.
* Remove side effects from Doc.__init__()
* Changes based on review comment
* Readd test
* Change interface of Doc.__init__()
* Simplify test
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update doc.md
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* replicate bug with tok2vec in annotating components
* add overfitting test with a frozen tok2vec
* remove broadcast from predict and check doc.tensor instead
* remove broadcast
* proper error
* slight rephrase of documentation
* Enable Cython<->Python bindings for `Pipe` and `TrainablePipe` methods
* `pipes_with_nvtx_range`: Skip hooking methods whose signature cannot be ascertained
When loading pipelines from a config file, the arguments passed to individual pipeline components is validated by `pydantic` during init. For this, the validation model attempts to parse the function signature of the component's c'tor/entry point so that it can check if all mandatory parameters are present in the config file.
When using the `models_and_pipes_with_nvtx_range` as a `after_pipeline_creation` callback, the methods of all pipeline components get replaced by a NVTX range wrapper **before** the above-mentioned validation takes place. This can be problematic for components that are implemented as Cython extension types - if the extension type is not compiled with Python bindings for its methods, they will have no signatures at runtime. This resulted in `pydantic` matching the *wrapper's* parameters with the those in the config and raising errors.
To avoid this, we now skip applying the wrapper to any (Cython) methods that do not have signatures.
* new error message when 'project run assets'
* new error message when 'project run assets'
* Update spacy/cli/project/run.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Due to problems with the javascript conversion in the website
quickstart, remove the `has_letters` setting to simplify generating
`attrs` for the default `tok2vec`.
Additionally reduce `PREFIX` as in the trained pipelines.
* Add a dry run flag to download
* Remove --dry-run, add --url option to `spacy info` instead
* Make mypy happy
* Print only the URL, so it's easier to use in scripts
* Don't add the egg hash unless downloading an sdist
* Update spacy/cli/info.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add two implementations of requirements
* Clean up requirements sample slightly
This should make mypy happy
* Update URL help string
* Remove requirements option
* Add url option to docs
* Add URL to spacy info model output, when available
* Add types-setuptools to testing reqs
* Add types-setuptools to requirements
* Add "compatible", expand docstring
* Update spacy/cli/info.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Run prettier on CLI docs
* Update docs
Add a sidebar about finding download URLs, with some examples of the new
command.
* Add download URLs to table on model page
* Apply suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Updates from review
* download url -> download link
* Update docs
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* `Matcher`: Better type checking of values in `SetPredicate`
`SetPredicate`: Emit warning and return `False` on unexpected value types
* Rename `value_type_mismatch` variable
* Inline warning
* Remove unexpected type warning from `_SetPredicate`
* Ensure that `str` values are not interpreted as sequences
Check elements of sequence values for convertibility to `str` or `int`
* Add more `INTERSECT` and `IN` test cases
* Test for inputs with multiple characters
* Return `False` early instead of using a boolean flag
* Remove superfluous `int` check, parentheses
* Apply suggestions from code review
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Appy suggestions from code review
* Clarify test comment
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* adding unit test for spacy.load with disable/exclude string arg
* allow pure strings in from_config
* update docs
* upstream type adjustements
* docs update
* make docstring more consistent
* Update spacy/language.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* two more cleanups
* fix type in internal method
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix `test_{prefer,require}_gpu`
These tests assumed that GPUs are only supported with CuPy, but since Thinc 8.1
we also support Metal Performance Shaders.
* test_misc: arrange thinc imports to be together
* Add lang folder for la (Latin)
* Add Latin lang classes
* Add minimal tokenizer exceptions
* Add minimal stopwords
* Add minimal lex_attrs
* Update stopwords, tokenizer exceptions
* Add la tests; register la_tokenizer in conftest.py
* Update spacy/lang/la/lex_attrs.py
Remove duplicate form in Latin lex_attrs
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Update natto-py version spec (#11222)
* Update natto-py version spec
* Update setup.cfg
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Add scorer to textcat API docs config settings (#11263)
* Update docs for pipeline initialize() methods (#11221)
* Update documentation for dependency parser
* Update documentation for trainable_lemmatizer
* Update documentation for entity_linker
* Update documentation for ner
* Update documentation for morphologizer
* Update documentation for senter
* Update documentation for spancat
* Update documentation for tagger
* Update documentation for textcat
* Update documentation for tok2vec
* Run prettier on edited files
* Apply similar changes in transformer docs
* Remove need to say annotated example explicitly
I removed the need to say "Must contain at least one annotated Example"
because it's often a given that Examples will contain some gold-standard
annotation.
* Run prettier on transformer docs
* chore: add 'concepCy' to spacy universe (#11255)
* chore: add 'concepCy' to spacy universe
* docs: add 'slogan' to concepCy
* Support full prerelease versions in the compat table (#11228)
* Support full prerelease versions in the compat table
* Fix types
* adding spans to doc_annotation in Example.to_dict (#11261)
* adding spans to doc_annotation in Example.to_dict
* to_dict compatible with from_dict: tuples instead of spans
* use strings for label and kb_id
* Simplify test
* Update data formats docs
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Fix regex invalid escape sequences (#11276)
* Add W605 to the errors raised by flake8 in the CI (#11283)
* Clean up automated label-based issue handling (#11284)
* Clean up automated label-based issue handline
1. upgrade tiangolo/issue-manager to latest
2. move needs-more-info to tiangolo
3. change needs-more-info close time to 7 days
4. delete old needs-more-info config
* Use old, longer message
* Fix label name
* Fix Dutch noun chunks to skip overlapping spans (#11275)
* Add test for overlapping noun chunks
* Skip overlapping noun chunks
* Update spacy/tests/lang/nl/test_noun_chunks.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Docs: displaCy documentation - data types, `parse_{deps,ents,spans}`, spans example (#10950)
* add in spans example and parse references
* rm autoformatter
* rm extra ents copy
* TypedDict draft
* type fixes
* restore non-documentation files
* docs update
* fix spans example
* fix hyperlinks
* add parse example
* example fix + argument fix
* fix api arg in docs
* fix bad variable replacement
* fix spacing in style
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* fix spacing on table
* fix spacing on table
* rm temp files
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* include span_ruler for default warning filter (#11333)
* Add uk pipelines to website (#11332)
* Check for . in factory names (#11336)
* Make fixes for PR #11349
* Fix roman numeral coverage in #11349
Co-authored-by: Patrick J. Burns <patricks@diyclassics.org>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Paul O'Leary McCann <polm@dampfkraft.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Lj Miranda <12949683+ljvmiranda921@users.noreply.github.com>
Co-authored-by: Jules Belveze <32683010+JulesBelveze@users.noreply.github.com>
Co-authored-by: stefawolf <wlf.ste@gmail.com>
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
* Fix lookup usage (fix#11347)
Before using the lookups table in the French (and Catalan) lemmatizers,
there's a check to see if the current term is in the table. But it's
checking a string against hashes, so it's always false. Also the table
lookup function is designed so you don't have to do that anyway.
* Use the lookup table directly
* Use string, not token
* Add token and span custom attributes to to_json()
* Change logic for to_json
* Add functionality to from_json
* Small adjustments
* Move token/span attributes to new dict key
* Fix test
* Fix the same test but much better
* Add backwards compatibility tests and adjust logic
* Add test to check if attributes not set in underscore are not saved in the json
* Add tests for json compatibility
* Adjust test names
* Fix tests and clean up code
* Fix assert json tests
* small adjustment
* adjust naming and code readability
* Adjust naming, added more tests and changed logic
* Fix typo
* Adjust errors, naming, and small test optimization
* Fix byte tests
* Fix bytes tests
* Change naming and json structure
* update schema
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/tokens/doc.pyx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/tokens/doc.pyx
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update spacy/schemas.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Update schema for underscore attributes
* Adjust underscore schema
* adjust schema tests
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* adding spans to doc_annotation in Example.to_dict
* to_dict compatible with from_dict: tuples instead of spans
* use strings for label and kb_id
* Simplify test
* Update data formats docs
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Added examples for Slovene
* Update spacy/lang/sl/examples.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Corrected a typo in one of the sentences
* Updated support for Slovenian
* Some minor changes to corrections
* Added forint currency
* Corrected HYPHENS_PERMITTED regex and some formatting
* Minor changes
* Un-xfail tokenizer test
* Format
Co-authored-by: Luka Dragar <D20124481@mytudublin.ie>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* add additional REL_OP
* change to condition and new rel_op symbols
* add operators to docs
* add the anchor while we're in here
* add tests
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
After the precomputable affine table of shape [nB, nF, nO, nP] is
computed, padding with shape [1, nF, nO, nP] is assigned to the first
row of the precomputed affine table. However, when we are indexing the
precomputed table, we get a row of shape [nF, nO, nP]. CuPy versions
before 10.0 cannot paper over this shape difference.
This change fixes compatibility with CuPy < 10.0 by squeezing the first
dimension of the padding before assignment.
* precompute_hiddens/Parser: do not look up CPU ops
`get_ops("cpu")` is quite expensive. To avoid this, we want to cache the
result as in #11068. However, for 3.x we do not want to change the ABI.
So we avoid the expensive lookup by using NumpyOps. This should have a
minimal impact, since `get_ops("cpu")` was only used when the model ops
were `CupyOps`. If the ops are `AppleOps`, we are still passing through
the correct BLAS implementation.
* _NUMPY_OPS -> NUMPY_OPS
* `strings`: More roubust type checking of keys/IDs, coerce `int`-like types to `hash_t`
* Preserve existing public API behaviour
* Fix return type
* Replace `bool` with `bint`, rename to `_try_coerce_to_hash`, replace `id` with `hash`
* Avoid unnecessary re-encoding and re-calculation of strings and hashs respectively
* Rename variables named `hash`
Add comment on early return
* `TrainablePipe`: Add NVTX range decorator
* Annotate `TrainablePipe` subclasses with NVTX ranges
* Export function signature to allow introspection of args in tests
* Revert "Annotate `TrainablePipe` subclasses with NVTX ranges"
This reverts commit d8684f7372.
* Revert "Export function signature to allow introspection of args in tests"
This reverts commit f4405ca3ad.
* Revert "`TrainablePipe`: Add NVTX range decorator"
This reverts commit 26536eb6b8.
* Add `spacy.pipes_with_nvtx_range` pipeline callback
* Show warnings for all missing user-defined pipe functions that need to be annotated
Fix imports, typos
* Rename `DEFAULT_ANNOTATABLE_PIPE_METHODS` to `DEFAULT_NVTX_ANNOTATABLE_PIPE_METHODS`
Reorder import
* Walk model nodes directly whilst applying NVTX ranges
Ignore pipe method wrapper when applying range
* Min_max_operators
1. Modified API and Usage for spaCy website to include min_max operator
2. Modified matcher.pyx to include min_max function {n,m} and its variants
3. Modified schemas.py to include min_max validation error
4. Added test cases to test_matcher_api.py, test_matcher_logic.py and test_pattern_validation.py
* attempt to fix mypy/pydantic compat issue
* formatting
* Update spacy/tests/matcher/test_pattern_validation.py
Co-authored-by: Source-Shen <82353723+Source-Shen@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* vectors: avoid expensive comparisons between numpy ints and Python ints
* vectors: avoid failure on lists of ints
* Convert another numpy int to Python
Distinguish between vectors that are 0 vs. missing vectors when warning
about missing vectors.
Update `Doc.has_vector` to match `Span.has_vector` and
`Token.has_vector` for cases where the vocab has vectors but none of the
tokens in the container have vectors.
* Handle Russian, Ukrainian and Bulgarian
* Corrections
* Correction
* Correction to comment
* Changes based on review
* Correction
* Reverted irrelevant change in punctuation.py
* Remove unnecessary group
* Reverted accidental change
* Try cloning repo from main & master
* fixup! Try cloning repo from main & master
* fixup! fixup! Try cloning repo from main & master
* refactor clone and check for repo:branch existence
* spacing fix
* make mypy happy
* type util function
* Update spacy/cli/project/clone.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Enable flag on spacy.load: foundation for include, enable arguments.
* Enable flag on spacy.load: fixed tests.
* Enable flag on spacy.load: switched from pretrained model to empty model with added pipes for tests.
* Enable flag on spacy.load: switched to more consistent error on misspecification of component activity. Test refactoring. Added to default config.
* Enable flag on spacy.load: added support for fields not in pipeline.
* Enable flag on spacy.load: removed serialization fields from supported fields.
* Enable flag on spacy.load: removed 'enable' from config again.
* Enable flag on spacy.load: relaxed checks in _resolve_component_activation_status() to allow non-standard pipes.
* Enable flag on spacy.load: fixed relaxed checks for _resolve_component_activation_status() to allow non-standard pipes. Extended tests.
* Enable flag on spacy.load: comments w.r.t. resolution workarounds.
* Enable flag on spacy.load: remove include fields. Update website docs.
* Enable flag on spacy.load: updates w.r.t. changes in master.
* Implement Doc.from_json(): update docstrings.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): remove newline.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): change error message for E1038.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Enable flag on spacy.load: wrapped docstring for _resolve_component_status() at 80 chars.
* Enable flag on spacy.load: changed exmples for enable flag.
* Remove newline.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix docstring for Language._resolve_component_status().
* Rename E1038 to E1042.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* account for NER labels with a hyphen in the name
* cleanup
* fix docstring
* add return type to helper method
* shorter method and few more occurrences
* user helper method across repo
* fix circular import
* partial revert to avoid circular import
The float -1 was returned rather than the integer -1 as the row for
unknown keys. This doesn't introduce a realy bug, since such floats
cast (without issues) to int in the conversion to NumPy arrays. Still,
it's nice to to do the correct thing :).
The `forward` of `precomputable_biaffine` performs matrix multiplication
and then `vstack`s the result with padding. This creates a temporary
array used for the output of matrix concatenation.
This change avoids the temporary by pre-allocating an array that is
large enough for the output of matrix multiplication plus padding and
fills the array in-place.
This gave me a small speedup (a bit over 100 WPS) on de_core_news_lg on
M1 Max (after changing thinc-apple-ops to support in-place gemm as BLIS
does).
* detect cycle during projectivize
* not complete test to detect cycle in projectivize
* boolean to int type to propagate error
* use unordered_set instead of set
* moved error message to errors
* removed cycle from test case
* use find instead of count
* cycle check: only perform one lookup
* Return bool again from _has_head_as_ancestor
Communicate presence of cycles through an output argument.
* Switch to returning std::pair to encode presence of a cycle
The has_cycle pointer is too easy to misuse. Ideally, we would have a
sum type like Rust's `Result` here, but C++ is not there yet.
* _is_non_proj_arc: clarify what we are returning
* _has_head_as_ancestor: remove count
We are now explicitly checking for cycles, so the algorithm must always
terminate. Either we encounter the head, we find a root, or a cycle.
* _is_nonproj_arc: simplify condition
* Another refactor using C++ exceptions
* Remove unused error code
* Print graph with cycle on exception
* Include .hh files in source package
* Add FIXME comment
* cycle detection test
* find cycle when starting from problematic vertex
Co-authored-by: Daniël de Kok <me@danieldk.eu>
* fix: De/Serialize `SpanGroups` including the SpanGroup keys
This prevents the loss of `SpanGroup`s that have the same .name as other `SpanGroup`s within the same `SpanGroups` object (upon de/serialization of the `SpanGroups`).
Fixes#10685
* Maintain backwards compatibility for serialized `SpanGroups`
(serialized as: a list of `SpanGroup`s, or b'')
* Add tests for `SpanGroups` deserialization backwards-compatibility
* Move a `SpanGroups` de/serialization test (test_issue10685)
to tests/serialize/test_serialize_spangroups.py
* Output a warning if deserializing a `SpanGroups` with duplicate .name-d `SpanGroup`s
* Minor refactor
* `SpanGroups.from_bytes` handles only `list` and `dict` types with
`dict` as the expected default
* For lists, keep first rather than last value encountered
* Update error message
* Rename and update tests
* Update to preserve list serialization of SpanGroups
To avoid breaking compatibility of serialized `Doc` and `DocBin` with
earlier versions of spacy v3, revert back to a list-only serialization,
but update the names just for serialization so that the SpanGroups keys
override the SpanGroup names.
* Preserve object identity and current key overwrite
* Preserve SpanGroup object identity
* Preserve last rather than first span group from SpanGroup list
format without SpanGroups keys
* Update inline comments
* Fix types
* Add type info for SpanGroup.copy
* Deserialize `SpanGroup`s as copies
when a single SpanGroup is the value for more than 1 `SpanGroups` key.
This is because we serialize `SpanGroups` as dicts (to maintain backward-
and forward-compatibility) and we can't assume `SpanGroup`s with the same
bytes/serialization were the same (identical) object, pre-serialization.
* Update spacy/tokens/_dict_proxies.py
* Add more SpanGroups serialization tests
Test that serialized SpanGroups maintain their Span order
* small clarification on older spaCy version
* Update spacy/tests/serialize/test_serialize_span_groups.py
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
