Commit Graph

8904 Commits

Author SHA1 Message Date
Adriane Boyd
a77f50baa4
Allow Scorer.score_spans to handle pred docs with missing annotation (#9701)
If the predicted docs are missing annotation according to
`has_annotation`, treat the docs as having no predictions rather than
raising errors when the annotation is missing.

The motivation for this is a combined tokenization+sents scorer for a
component where the sents annotation is optional. To provide a single
scorer in the component factory, it needs to be possible for the scorer
to continue despite missing sents annotation in the case where the
component is not annotating sents.
2021-11-23 15:17:19 +01:00
Adriane Boyd
36c7047946
Use reference parse to initialize parser moves (#9722) 2021-11-23 14:55:55 +01:00
Adriane Boyd
0e93b315f3
Convert labels to strings for README in package CLI (#9694) 2021-11-19 08:51:46 +01:00
Adriane Boyd
ea450d652c
Exclude strings from v3.2+ source vector checks (#9697)
Exclude strings from `Vector.to_bytes()` comparions for v3.2+ `Vectors`
that now include the string store so that the source vector comparison
is only comparing the vectors and not the strings.
2021-11-19 08:51:19 +01:00
Paul O'Leary McCann
f3981bd0c8
Clarify how to fill in init_tok2vec after pretraining (#9639)
* Clarify how to fill in init_tok2vec after pretraining

* Ignore init_tok2vec arg in pretraining

* Update docs, config setting

* Remove obsolete note about not filling init_tok2vec early

This seems to have also caught some lines that needed cleanup.
2021-11-18 15:38:30 +01:00
Adriane Boyd
c9baf9d196
Fix spancat for empty docs and zero suggestions (#9654)
* Fix spancat for empty docs and zero suggestions

* Use ops.xp.zeros in test
2021-11-15 12:40:55 +01:00
github-actions[bot]
67d8c8a081
Auto-format code with black (#9664)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-11-12 10:00:03 +01:00
Sofie Van Landeghem
24cdd4c88e
Merge pull request #9638 from polm/fix/optional-pretrain-path
Make Jsonl Corpus reader path optional again
2021-11-09 10:45:14 +01:00
Paul O'Leary McCann
8aa2d32ca9 Update jsonlcorpus constructor types 2021-11-09 16:20:19 +09:00
Paul O'Leary McCann
71fb00ed95
Update spacy/training/corpus.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-11-08 10:02:29 +00:00
Sofie Van Landeghem
c97f29c593
Merge pull request #9629 from ljvmiranda921/chore/migrate-regressions
Migrate regression and other tests to the new pytest marker
2021-11-08 09:07:38 +01:00
Paul O'Leary McCann
141f12b92e Make Jsonl Corpus reader optional again 2021-11-07 18:56:23 +09:00
Lj Miranda
909177589d Remove utility script 2021-11-06 06:35:58 +08:00
Adriane Boyd
0fc3dee772
Merge pull request #9596 from adrianeboyd/tests/reenable-v3.2.0-tests
Reenable tests for v3.2.0
2021-11-05 10:54:30 +01:00
github-actions[bot]
5cdb7eb5c2
Auto-format code with black (#9631)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-05 09:58:36 +01:00
Adriane Boyd
e6f91b6f27
Format (#9630) 2021-11-05 09:56:26 +01:00
Lj Miranda
8e7deaf210 Add missing imports in some regression tests
- test_issue7001-8000.py
- test_issue8190.py
2021-11-05 11:47:59 +08:00
Lj Miranda
addeb34bc4 Decorate regression tests
Even if the issue number is already in the file, I still
decorated them just to follow the convention found in test_issue8168.py
2021-11-05 11:47:44 +08:00
Lj Miranda
91dec2c76e Decorate non-regression tests 2021-11-05 11:47:33 +08:00
Lj Miranda
199943deb4 Add simple script to add pytest marks 2021-11-05 11:47:28 +08:00
Duygu Altinok
f0e8c9fe58
Spanish noun chunks review (#9537)
* updated syntax iters

* formatted the code

* added prepositional objects

* code clean up

* eliminated left attached adp

* added es vocab

* added basic tests

* fixed typo

* fixed typo

* list to set

* fixed doc name

* added code for conj

* more tests

* differentiated adjectives and flat

* fixed typo

* added compounds

* more compounds

* tests for compounds

* tests for nominal modifiers

* fixed typo

* fixed typo

* formatted file

* reformatted tests

* fixed typo

* fixed punct typo

* formatted after changes

* added indirect object

* added full sentence examples

* added longer full sentence examples

* fixed sentence length of test

* added passive subj

* added test case by Damian
2021-11-05 00:46:36 +01:00
Duygu Altinok
6e6650307d
Portuguese noun chunks review (#9559)
* added tests

* added pt vocab

* transferred spanish

* added syntax iters

* fixed parenthesis

* added nmod example

* added relative pron

* fixed rel pron

* added rel subclause

* corrected typo

* added more NP chains

* long sentence

* fixed typo

* fixed typo

* fixed typo

* corrected heads

* added passive subj

* added pass subj

* added passive obj

* refinement to rights

* went back to odl

* fixed test

* fixed typo

* fixed typo

* formatted

* Format

* Format test cases

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-11-04 23:55:49 +01:00
Adriane Boyd
07dea324f6 Merge remote-tracking branch 'upstream/develop' into chore/switch-to-master-v3.2.0 2021-11-03 15:32:18 +01:00
Bram Vanroy
cab9209c3d
use metaclass to decorate errors (#9593) 2021-11-03 15:29:32 +01:00
Paul O'Leary McCann
c1cc94a33a
Fix typo about receptive field size (#9564) 2021-11-03 15:16:55 +01:00
Adriane Boyd
e06bbf72a4
Fix tok2vec-less textcat generation in website quickstart (#9610) 2021-11-03 15:11:07 +01:00
Adriane Boyd
db0d8c56d0
Add test for Language.pipe as_tuples with custom error handlers (#9608)
* make nlp.pipe() return None docs when no exceptions are (re-)raised during error handling

* Remove changes other than as_tuples test

* Only check warning count for one process

* Fix types

* Format

Co-authored-by: Xi Bai <xi.bai.ed@gmail.com>
2021-11-03 10:57:34 +01:00
Adriane Boyd
6eee024ff6
Pickle Doc._context (#9603) 2021-11-03 09:14:29 +01:00
Adriane Boyd
61daac54e4
Serialize _context separately in multiprocessing pipe (#9597)
* Serialize _context with Doc

* Revert "Serialize _context with Doc"

This reverts commit 161f1fac91.

* Serialize Doc._context separately for multiprocessing pipe
2021-11-03 07:51:53 +01:00
Adriane Boyd
5a979137a7
Set as_tuples on Doc during processing (#9592)
* Set as_tuples on Doc during processing

* Fix types

* Format
2021-11-02 15:08:22 +01:00
Adriane Boyd
4d5db737e9 Revert "Temporarily skip compat tests (#9594)"
This reverts commit 667572adca.
2021-11-02 14:24:06 +01:00
Adriane Boyd
667572adca
Temporarily skip compat tests (#9594) 2021-11-02 14:10:48 +01:00
Lj Miranda
f1bc655a38
Add initial Tagalog (tl) tests (#9582)
* Add tl_tokenizer to test fixtures

* Add tagalog tests
2021-11-02 08:35:49 +01:00
Adriane Boyd
bb26550e22
Fix StaticVectors after floret+mypy merge (#9566) 2021-10-29 16:25:43 +02:00
Adriane Boyd
322635e371
Set version to v3.2.0 (#9565) 2021-10-29 15:22:40 +02:00
Adriane Boyd
2d430958e1 Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-3 2021-10-29 12:18:15 +02:00
Paul O'Leary McCann
006df1ae1f
Clarify error when words are of wrong type (#9541)
* Clarify error when words are of wrong type

See #9437

* Update docs

* Use try/except

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
2021-10-29 12:08:40 +02:00
Paul O'Leary McCann
2fd8d616e7
Add docs section for spacy.cli.train.train (#9545)
* Add section for spacy.cli.train.train

* Add link from training page to train function

* Ensure path in train helper

* Update docs

Co-authored-by: Ines Montani <ines@ines.io>
2021-10-29 10:36:34 +02:00
Adriane Boyd
5477453ea3
Docs for thinc-apple-ops (#9549)
* Docs for thinc-apple-ops

* Ignore thinc-apple-ops in reqs tests

* Fix install quickstart

* Add cupy cuda 113, 114 extras

* Remove draft section

Co-authored-by: Ines Montani <ines@ines.io>
2021-10-29 10:35:31 +02:00
Adriane Boyd
12974bf4d9
Add micro PRF for morph scoring (#9546)
* Add micro PRF for morph scoring

For pipelines where morph features are added by more than one component
and a reference training corpus may not contain all features, a micro
PRF score is more flexible than a simple accuracy score. An example is
the reading and inflection features added by the Japanese tokenizer.

* Use `morph_micro_f` as the default morph score for Japanese
morphologizers.

* Update docstring

* Fix typo in docstring

* Update Scorer API docs

* Fix results type

* Organize score list by attribute prefix
2021-10-29 10:29:29 +02:00
Adriane Boyd
c053f158c5
Add support for floret vectors (#8909)
* Add support for fasttext-bloom hash-only vectors

Overview:

* Extend `Vectors` to have two modes: `default` and `ngram`
  * `default` is the default mode and equivalent to the current
    `Vectors`
  * `ngram` supports the hash-only ngram tables from `fasttext-bloom`
* Extend `spacy.StaticVectors.v2` to handle both modes with no changes
  for `default` vectors
* Extend `spacy init vectors` to support ngram tables

The `ngram` mode **only** supports vector tables produced by this
fork of fastText, which adds an option to represent all vectors using
only the ngram buckets table and which uses the exact same ngram
generation algorithm and hash function (`MurmurHash3_x64_128`).
`fasttext-bloom` produces an additional `.hashvec` table, which can be
loaded by `spacy init vectors --fasttext-bloom-vectors`.

https://github.com/adrianeboyd/fastText/tree/feature/bloom

Implementation details:

* `Vectors` now includes the `StringStore` as `Vectors.strings` so that
  the API can stay consistent for both `default` (which can look up from
  `str` or `int`) and `ngram` (which requires `str` to calculate the
  ngrams).

* In ngram mode `Vectors` uses a default `Vectors` object as a cache
  since the ngram vectors lookups are relatively expensive.

  * The default cache size is the same size as the provided ngram vector
    table.

  * Once the cache is full, no more entries are added. The user is
    responsible for managing the cache in cases where the initial
    documents are not representative of the texts.

  * The cache can be resized by setting `Vectors.ngram_cache_size` or
    cleared with `vectors._ngram_cache.clear()`.

* The API ends up a bit split between methods for `default` and for
  `ngram`, so functions that only make sense for `default` or `ngram`
  include warnings with custom messages suggesting alternatives where
  possible.

* `Vocab.vectors` becomes a property so that the string stores can be
  synced when assigning vectors to a vocab.

* `Vectors` serializes its own config settings as `vectors.cfg`.

* The `Vectors` serialization methods have added support for `exclude`
  so that the `Vocab` can exclude the `Vectors` strings while serializing.

Removed:

* The `minn` and `maxn` options and related code from
  `Vocab.get_vector`, which does not work in a meaningful way for default
  vector tables.

* The unused `GlobalRegistry` in `Vectors`.

* Refactor to use reduce_mean

Refactor to use reduce_mean and remove the ngram vectors cache.

* Rename to floret

* Rename to floret in error messages

* Use --vectors-mode in CLI, vector init

* Fix vectors mode in init

* Remove unused var

* Minor API and docstrings adjustments

* Rename `--vectors-mode` to `--mode` in `init vectors` CLI
* Rename `Vectors.get_floret_vectors` to `Vectors.get_batch` and support
  both modes.
* Minor updates to Vectors docstrings.

* Update API docs for Vectors and init vectors CLI

* Update types for StaticVectors
2021-10-27 14:08:31 +02:00
Adriane Boyd
0c97ed2746
Rename ja morph features to Inflection and Reading (#9520)
* Rename ja morph features to Inflection and Reading
2021-10-27 13:13:03 +02:00
Adriane Boyd
2ea9b58006
Ignore prefix in suffix matches (#9155)
* Ignore prefix in suffix matches

Ignore the currently matched prefix when looking for suffix matches in
the tokenizer. Otherwise a lookbehind in the suffix pattern may match
incorrectly due the presence of the prefix in the token string.

* Move °[cfkCFK]. to a tokenizer exception

* Adjust exceptions for same tokenization as v3.1

* Also update test accordingly

* Continue to split . after °CFK if ° is not a prefix

* Exclude new ° exceptions for pl

* Switch back to default tokenization of "° C ."

* Revert "Exclude new ° exceptions for pl"

This reverts commit 952013a5b4.

* Add exceptions for °C for hu
2021-10-27 13:02:25 +02:00
Adriane Boyd
386dcada1c
Address random results in slow readers tests (#9544)
* Set random seed for dataset shuffling
* Use more dev examples for non-zero scores
2021-10-26 16:53:10 +02:00
Adriane Boyd
a803af9dfa Merge remote-tracking branch 'upstream/master' into chore/update-develop-from-master-v3.2-1 2021-10-26 11:53:50 +02:00
github-actions[bot]
b0b115ff39
Auto-format code with black (#9530)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-10-22 13:03:10 +02:00
Sofie Van Landeghem
c7ed631f3c
bump version to 3.1.4 (#9524) 2021-10-21 20:34:57 +02:00
Daniël de Kok
f31ac6fd4f
Print a warning when multiprocessing is used on a GPU (#9475)
* Raise an error when multiprocessing is used on a GPU

As reported in #5507, a confusing exception is thrown when
multiprocessing is used with a GPU model and the `fork` multiprocessing
start method:

cupy.cuda.runtime.CUDARuntimeError: cudaErrorInitializationError: initialization error

This change checks whether one of the models uses the GPU when
multiprocessing is used. If so, raise a friendly error message.

Even though multiprocessing can work on a GPU with the `spawn` method,
it quickly runs the GPU out-of-memory on real-world data. Also,
multiprocessing on a single GPU typically does not provide large
performance gains.

* Move GPU multiprocessing check to Language.pipe

* Warn rather than error when using multiprocessing with GPU models

* Improve GPU multiprocessing warning message.

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Reduce API assumptions

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/language.py

* Update spacy/language.py

* Test that warning is thrown with GPU + multiprocessing

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-10-21 16:14:23 +02:00
Sofie Van Landeghem
5a38f79f18
Custom component types in spacy.ty (#9469)
* add custom protocols in spacy.ty

* add a test for the new types in spacy.ty

* import Example when type checking

* some type fixes

* put Protocol in compat

* revert update check back to hasattr

* runtime_checkable in compat as well
2021-10-21 15:31:06 +02:00
Daniël de Kok
d0631e3005
Replace use_ops("numpy") by use_ops("cpu") in the parser (#9501)
* Replace use_ops("numpy") by use_ops("cpu") in the parser

This ensures that the best available CPU implementation is chosen
(e.g. Thinc Apple Ops on macOS).

* Run spaCy tests with apple-thinc-ops on macOS
2021-10-21 11:22:45 +02:00