Commit Graph

493 Commits

Author SHA1 Message Date
Ines Montani
009280fbc5 Tidy up and auto-format 2019-08-18 15:09:16 +02:00
Ines Montani
89f2b87266 Open file as utf-8 (closes #4138) 2019-08-18 13:55:34 +02:00
Ines Montani
f35a8221d8 Move generation of parses out of with blocks 2019-08-18 13:54:26 +02:00
Ines Montani
e5c7e19e82 Fix typo and auto-format [ci skip] 2019-08-16 10:53:38 +02:00
adrianeboyd
a58cb023d7 WIP: Extending debug-data (#4114)
* Extending debug-data with dependency checks, etc.

* Modify debug-data to load with GoldCorpus to iterate over .json/.jsonl
files within directories

* Add GoldCorpus iterator train_docs_without_preprocessing to load
original train docs without shuffling and projectivizing

* Report number of misaligned tokens

* Add more dependency checks and messages

* Update spacy/cli/debug_data.py

Co-Authored-By: Ines Montani <ines@ines.io>

* Fixed conflict

* Move counts to _compile_gold()

* Move all dependency nonproj/sent/head/cycle counting to
_compile_gold()

* Unclobber previous merges

* Update variable names

* Update more variable names, fix misspelling

* Don't clobber loading error messages

* Only warn about misaligned tokens if present
2019-08-16 10:52:46 +02:00
Ines Montani
6bec24cdd0 Require downloaded model in pkg_resources (#4090) 2019-08-07 13:18:11 +02:00
Ines Montani
8718ca8b1f
Fix init_model if there's no vocab (closes #4048) (#4049) 2019-08-01 17:26:09 +02:00
Ines Montani
a3723f439c Fix formatting [ci skip] 2019-07-27 16:35:42 +02:00
Ines Montani
e000b5ed82 Also support "requirements" in model.json 2019-07-27 13:34:57 +02:00
Ines Montani
f2ea3e3ea2
Merge branch 'master' into feature/nel-wiki 2019-07-09 21:57:47 +02:00
Björn Böing
04982ccc40 Update pretrain to prevent unintended overwriting of weight fil… (#3902)
* Update pretrain to prevent unintended overwriting of weight files for #3859

* Add '--epoch-start' to pretrain docs

* Add mising pretrain arguments to bash example

* Update doc tag for v2.1.5
2019-07-09 21:48:30 +02:00
Ines Montani
ae2c208735 Auto-format [ci skip] 2019-06-20 10:36:38 +02:00
Ines Montani
872121955c Update error code 2019-06-20 10:35:51 +02:00
Björn Böing
ebf5a04d6c Update pretrain docs and add unsupported loss_func error (#3860)
* Add error to `get_vectors_loss` for unsupported loss function of `pretrain`

* Add missing "--loss-func" argument to pretrain docs. Update pretrain plac annotations to match docs.

* Add missing quotation marks
2019-06-20 10:30:44 +02:00
BreakBB
d8573ee715 Update error raising for CLI pretrain to fix #3840 (#3843)
* Add check for empty input file to CLI pretrain

* Raise error if JSONL is not a dict or contains neither `tokens` nor `text` key

* Skip empty values for correct pretrain keys and log a counter as warning

* Add tests for CLI pretrain core function make_docs.

* Add a short hint for the `tokens` key to the CLI pretrain docs

* Add success message to CLI pretrain

* Update model loading to fix the tests

* Skip empty values and do not create docs out of it
2019-06-16 13:22:57 +02:00
Motoki Wu
9c064e6ad9 Add resume logic to spacy pretrain (#3652)
* Added ability to resume training

* Add to readmee

* Remove duplicate entry
2019-06-12 13:29:23 +02:00
intrafind
2bba2a3536 Fix for #3811 (#3815)
Corrected type of seed parameter.
2019-06-03 18:32:47 +02:00
Ines Montani
aea1c93a05 Replace cytoolz.partition_all with util.minibatch 2019-05-11 21:12:09 +02:00
Ines Montani
0bf6441863 Fix .iob converter (closes #3620) 2019-05-11 19:15:26 +02:00
Ines Montani
6b3a79ac96 Call rmtree and copytree with strings (closes #3713) 2019-05-11 15:48:35 +02:00
devforfu
21af12eb53 Make "text" key in JSONL format optional when "tokens" key is provided (#3721)
* Fix issue with forcing text key when it is not required

* Extending the docs to reflect the new behavior
2019-05-11 15:41:29 +02:00
F0rge1cE
dd1e6b0bc6 Fix offset bug in loading pre-trained word2vec. (#3689)
* Fix offset bug in loading pre-trained word2vec.

* add contributor agreement
2019-05-06 23:00:38 +02:00
Ines Montani
e0f487f904 Rename early_stopping_iter to n_early_stopping 2019-04-22 14:31:25 +02:00
Ines Montani
9767427669 Auto-format 2019-04-22 14:31:11 +02:00
Ines Montani
7917ce2f73 Make flag shortcut consistent and document 2019-04-22 14:23:44 +02:00
Motoki Wu
8e2cef49f3 Add save after --save-every batches for spacy pretrain (#3510)
<!--- Provide a general summary of your changes in the title. -->

When using `spacy pretrain`, the model is saved only after every epoch. But each epoch can be very big since `pretrain` is used for language modeling tasks. So I added a `--save-every` option in the CLI to save after every `--save-every` batches.

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

To test...

Save this file to `sample_sents.jsonl`

```
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
{"text": "hello there."}
```

Then run `--save-every 2` when pretraining.

```bash
spacy pretrain sample_sents.jsonl en_core_web_md here -nw 1 -bs 1 -i 10 --save-every 2
```

And it should save the model to the `here/` folder after every 2 batches. The models that are saved during an epoch will have a `.temp` appended to the save name.

At the end the training, you should see these files (`ls here/`):

```bash
config.json     model2.bin      model5.bin      model8.bin
log.jsonl       model2.temp.bin model5.temp.bin model8.temp.bin
model0.bin      model3.bin      model6.bin      model9.bin
model0.temp.bin model3.temp.bin model6.temp.bin model9.temp.bin
model1.bin      model4.bin      model7.bin
model1.temp.bin model4.temp.bin model7.temp.bin
```

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

This is a new feature to `spacy pretrain`.

🌵 **Unfortunately, I haven't been able to test this because compiling from source is not working (cythonize error).** 

```
Processing matcher.pyx
[Errno 2] No such file or directory: '/Users/mwu/github/spaCy/spacy/matcher.pyx'
Traceback (most recent call last):
  File "/Users/mwu/github/spaCy/bin/cythonize.py", line 169, in <module>
    run(args.root)
  File "/Users/mwu/github/spaCy/bin/cythonize.py", line 158, in run
    process(base, filename, db)
  File "/Users/mwu/github/spaCy/bin/cythonize.py", line 124, in process
    preserve_cwd(base, process_pyx, root + ".pyx", root + ".cpp")
  File "/Users/mwu/github/spaCy/bin/cythonize.py", line 87, in preserve_cwd
    func(*args)
  File "/Users/mwu/github/spaCy/bin/cythonize.py", line 63, in process_pyx
    raise Exception("Cython failed")
Exception: Cython failed
Traceback (most recent call last):
  File "setup.py", line 276, in <module>
    setup_package()
  File "setup.py", line 209, in setup_package
    generate_cython(root, "spacy")
  File "setup.py", line 132, in generate_cython
    raise RuntimeError("Running cythonize failed")
RuntimeError: Running cythonize failed
```

Edit: Fixed! after deleting all `.cpp` files: `find spacy -name "*.cpp" | xargs rm`

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-04-22 14:10:16 +02:00
Krzysztof Kowalczyk
cc1516ec26 Improved training and evaluation (#3538)
* Add early stopping

* Add return_score option to evaluate

* Fix missing str to path conversion

* Fix import + old python compatibility

* Fix bad beam_width setting during cpu evaluation in spacy train with gpu option turned on
2019-04-15 12:04:36 +02:00
Shikhar Chauhan
bbf6f9f764 Change default output format from jsonl to json for cli convert (#3583) (closes #3523)
* Changing default ouput format from jsonl to json for cli convert

* Adding Contributor Agreement
2019-04-12 11:31:23 +02:00
Ines Montani
c23e234d65 Auto-format 2019-04-01 12:11:27 +02:00
Matthew Honnibal
1c8ff59185
Merge pull request #3441 from explosion/fix/cli-ud-scripts
💫 Move UD scripts to bin
2019-03-20 12:19:15 +01:00
Matthew Honnibal
1612990e88 Implement cosine loss for spacy pretrain. Make default 2019-03-20 11:06:58 +00:00
Ines Montani
7400c7f8a7 Move UD scripts to bin 2019-03-20 01:19:34 +01:00
Ines Montani
685fff40cf Revert "Add --always-link flag to cli.download (see #3435)"
This reverts commit 583a566843.
2019-03-20 01:03:40 +01:00
Ines Montani
583a566843 Add --always-link flag to cli.download (see #3435) 2019-03-19 22:03:27 +01:00
Matthew Honnibal
47e110375d Fix jsonl to json conversion (#3419)
* Fix spacy.gold.docs_to_json function

* Fix jsonl2json converter
2019-03-17 22:12:54 +01:00
Ines Montani
226db621d0 Strip out .dev versions in spacy validate [ci skip] 2019-03-17 12:16:53 +01:00
Matthew Honnibal
62afa64a8d Expose batch size and length caps on CLI for pretrain (#3417)
Add and document CLI options for batch size, max doc length, min doc length for `spacy pretrain`.

Also improve CLI output.

Closes #3216 

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-16 21:38:45 +01:00
Matthew Honnibal
58d562d9b0
Merge pull request #3416 from explosion/feature/improve-beam
Improve beam search support
2019-03-16 18:42:18 +01:00
Ines Montani
0f8739c7cb Update train.py 2019-03-16 16:04:15 +01:00
Ines Montani
e7aa25d9b1 Fix beam width integration 2019-03-16 16:02:47 +01:00
Ines Montani
c94742ff64 Only add beam width if customised 2019-03-16 15:55:31 +01:00
Ines Montani
7a354761c7 Auto-format 2019-03-16 15:55:13 +01:00
Matthew Honnibal
daa8c3787a Add eval_beam_widths argument to spacy train 2019-03-16 15:02:39 +01:00
Ryan Ford
00842d7f1b Merging conversion scripts for conll formats (#3405)
* merging conllu/conll and conllubio scripts

* tabs to spaces

* removing conllubio2json from converters/__init__.py

* Move not-really-CLI tests to misc

* Add converter test using no-ud data

* Fix test I broke

* removing include_biluo parameter

* fixing read_conllx

* remove include_biluo from convert.py
2019-03-15 18:14:46 +01:00
Matthew Honnibal
f762c36e61 Evaluate accuracy at multiple beam widths 2019-03-15 15:19:49 +01:00
Ines Montani
3fe5811fa7 Only link model after download if shortcut link (#3378) 2019-03-10 13:02:24 +01:00
Ines Montani
76764fcf59 💫 Improve converters and training data file formats (#3374)
* Populate converter argument info automatically

* Add conversion option for msgpack

* Update docs

* Allow reading training data from JSONL
2019-03-08 23:15:23 +01:00
Ines Montani
daaeeb7a2b Merge branch 'master' into develop 2019-03-07 22:07:31 +01:00
Adrien Ball
88909a9adb Fix egg fragments in direct download (#3369)
## Description
The egg fragment in the URL must be of the form `#egg=package_name==version` instead of `#egg=package_name-version`.
One of the consequences of specifying wrong egg fragments is that `pip` does not recognize the package and its version properly, and thus it re-downloads the package systematically.

I'm not sure how this should be tested properly. 
Here is what I had before the fix when running the same direct download twice:
```
$ python -m spacy download en_core_web_sm-2.0.0 --direct
Looking in indexes: https://pypi.python.org/simple/
Collecting en_core_web_sm-2.0.0 from https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz#egg=en_core_web_sm-2.0.0
  Downloading https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz (37.4MB)
    100% |████████████████████████████████| 37.4MB 1.6MB/s
  Generating metadata for package en-core-web-sm-2.0.0 produced metadata for project name en-core-web-sm. Fix your #egg=en-core-web-sm-2.0.0 fragments.
Installing collected packages: en-core-web-sm
  Running setup.py install for en-core-web-sm ... done
Successfully installed en-core-web-sm-2.0.0
$ python -m spacy download en_core_web_sm-2.0.0 --direct
Looking in indexes: https://pypi.python.org/simple/
Collecting en_core_web_sm-2.0.0 from https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz#egg=en_core_web_sm-2.0.0
  Downloading https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz (37.4MB)
    100% |████████████████████████████████| 37.4MB 919kB/s
  Generating metadata for package en-core-web-sm-2.0.0 produced metadata for project name en-core-web-sm. Fix your #egg=en-core-web-sm-2.0.0 fragments.
Requirement already satisfied (use --upgrade to upgrade): en-core-web-sm from https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz#egg=en_core_web_sm-2.0.0 in ./venv3/lib/python3.6/site-packages
```

And after the fix:
```
$ python -m spacy download en_core_web_sm-2.0.0 --direct
Looking in indexes: https://pypi.python.org/simple/
Collecting en_core_web_sm==2.0.0 from https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz#egg=en_core_web_sm==2.0.0
  Downloading https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz (37.4MB)
    100% |████████████████████████████████| 37.4MB 1.1MB/s
Installing collected packages: en-core-web-sm
  Running setup.py install for en-core-web-sm ... done
Successfully installed en-core-web-sm-2.0.0
$ python -m spacy download en_core_web_sm-2.0.0 --direct
Looking in indexes: https://pypi.python.org/simple/
Requirement already satisfied: en_core_web_sm==2.0.0 from https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.0.0/en_core_web_sm-2.0.0.tar.gz#egg=en_core_web_sm==2.0.0 in ./venv3/lib/python3.6/site-packages (2.0.0)
```

### Types of change
This is an enhancement as it avoids unnecessary downloads of (potentially big) spacy models, when they have already been downloaded.

## Checklist
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
2019-03-07 21:07:19 +01:00
Ines Montani
5651a0d052 💫 Replace {Doc,Span}.merge with Doc.retokenize (#3280)
* Add deprecation warning to Doc.merge and Span.merge

* Replace {Doc,Span}.merge with Doc.retokenize
2019-02-15 10:29:44 +01:00
Ines Montani
483dddc9bc 💫 Add token match pattern validation via JSON schemas (#3244)
* Add custom MatchPatternError

* Improve validators and add validation option to Matcher

* Adjust formatting

* Never validate in Matcher within PhraseMatcher

If we do decide to make validate default to True, the PhraseMatcher's Matcher shouldn't ever validate. Here, we create the patterns automatically anyways (and it's currently unclear whether the validation has performance impacts at a very large scale).
2019-02-13 01:47:26 +11:00
Ines Montani
25602c794c Tidy up and fix small bugs and typos 2019-02-08 14:14:49 +01:00
Ines Montani
5d0b60999d Merge branch 'master' into develop 2019-02-07 20:54:07 +01:00
Ines Montani
338d659bd0 Store JSON schemas in Python and tidy up (#3235) 2019-02-07 19:44:31 +11:00
Sofie
66016ac289 Batch UD evaluation script (#3174)
* running UD eval

* printing timing of tokenizer: tokens per second

* timing of default English model

* structured output and parameterization to compare different runs

* additional flag to allow evaluation without parsing info

* printing verbose log of errors for manual inspection

* printing over- and undersegmented cases (and combo's)

* add under and oversegmented numbers to Score and structured output

* print high-freq over/under segmented words and word shapes

* printing examples as part of the structured output

* print the results to file

* batch run of different models and treebanks per language

* cleaning up code

* commandline script to process all languages in spaCy & UD

* heuristic to remove blinded corpora and option to run one single best per language

* pathlib instead of os for file paths
2019-01-27 06:01:02 +01:00
Gavriel Loria
9a5003d5c8 iob converter: add 'exception' for error 'too many values' (#3159)
* added contributor agreement

* issue #3128 throw exception on bad IOB/2 formatting

* Update spacy/cli/converters/iob2json.py with ValueError

Co-Authored-By: gavrieltal <gtloria@protonmail.com>
2019-01-16 13:44:16 +01:00
Mark Neumann
e599ed9ef8 Allow vectors to be optional in init-model, more robust string counting (#3155)
* more robust init-model

* key not word

* add license agreement
2019-01-14 23:48:30 +01:00
Jari Bakken
ba8a840f84 spacy.cli.evaluate: fix TypeError (#3101) 2018-12-28 11:14:28 +01:00
Jari Bakken
0546135fba Set vectors.name when updating meta.json during training (#3100)
* Set vectors.name when updating meta.json during training

* add vectors name to meta in `spacy package`
2018-12-27 19:55:40 +01:00
Jari Bakken
cc95167b6d cli.convert: fix typo in converter arguments (#3099) 2018-12-27 18:08:41 +01:00
Matthew Honnibal
1788bf1af7 Unbreak progress bar 2018-12-20 13:57:00 +01:00
Matthew Honnibal
c315e08e6e Fix formatting of meta.json after spacy package 2018-12-19 14:36:08 +01:00
Matthew Honnibal
0f83b98afa Remove unused code from spacy pretrain 2018-12-18 19:19:26 +01:00
Ines Montani
ae880ef912 Tidy up merge conflict leftovers 2018-12-18 13:58:30 +01:00
Ines Montani
61d09c481b Merge branch 'master' into develop 2018-12-18 13:48:10 +01:00
Matthew Honnibal
92f4b9c8ea set max batch size to 1000 2018-12-17 23:15:39 +00:00
Matthew Honnibal
7c504b6ddb Try to implement more losses for pretraining
* Try to implement cosine loss
This one seems to be correct? Still unsure, but it performs okay

* Try to implement the von Mises-Fisher loss
This one's definitely not right yet.
2018-12-17 14:48:27 +00:00
Matthew Honnibal
ab9494b2a3 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-12-12 21:08:50 +00:00
Matthew Honnibal
fb56028476 Remove b1 and b2 decay 2018-12-12 12:37:07 +01:00
Matthew Honnibal
df15279e88 Reduce batch size during pretrain 2018-12-10 15:30:23 +00:00
Matthew Honnibal
83ac227bd3
💫 Better support for semi-supervised learning (#3035)
The new spacy pretrain command implemented BERT/ULMFit/etc-like transfer learning, using our Language Modelling with Approximate Outputs version of BERT's cloze task. Pretraining is convenient, but in some ways it's a bit of a strange solution. All we're doing is initialising the weights. At the same time, we're putting a lot of work into our optimisation so that it's less sensitive to initial conditions, and more likely to find good optima. I discuss this a bit in the pseudo-rehearsal blog post: https://explosion.ai/blog/pseudo-rehearsal-catastrophic-forgetting
Support semi-supervised learning in spacy train

One obvious way to improve these pretraining methods is to do multi-task learning, instead of just transfer learning. This has been shown to work very well: https://arxiv.org/pdf/1809.08370.pdf . This patch makes it easy to do this sort of thing.

    Add a new argument to spacy train, --raw-text. This takes a jsonl file with unlabelled data that can be used in arbitrary ways to do semi-supervised learning.

    Add a new method to the Language class and to pipeline components, .rehearse(). This is like .update(), but doesn't expect GoldParse objects. It takes a batch of Doc objects, and performs an update on some semi-supervised objective.

    Move the BERT-LMAO objective out from spacy/cli/pretrain.py into spacy/_ml.py, so we can create a new pipeline component, ClozeMultitask. This can be specified as a parser or NER multitask in the spacy train command. Example usage:

python -m spacy train en ./tmp ~/data/en-core-web/train/nw.json ~/data/en-core-web/dev/nw.json --pipeline parser --raw-textt ~/data/unlabelled/reddit-100k.jsonl --vectors en_vectors_web_lg --parser-multitasks cloze

Implement rehearsal methods for pipeline components

The new --raw-text argument and nlp.rehearse() method also gives us a good place to implement the the idea in the pseudo-rehearsal blog post in the parser. This works as follows:

    Add a new nlp.resume_training() method. This allocates copies of pre-trained models in the pipeline, setting things up for the rehearsal updates. It also returns an optimizer object. This also greatly reduces confusion around the nlp.begin_training() method, which randomises the weights, making it not suitable for adding new labels or otherwise fine-tuning a pre-trained model.

    Implement rehearsal updates on the Parser class, making it available for the dependency parser and NER. During rehearsal, the initial model is used to supervise the model being trained. The current model is asked to match the predictions of the initial model on some data. This minimises catastrophic forgetting, by keeping the model's predictions close to the original. See the blog post for details.

    Implement rehearsal updates for tagger

    Implement rehearsal updates for text categoriz
2018-12-10 16:25:33 +01:00
Matthew Honnibal
b1c8731b4d Make spacy train respect LOG_FRIENDLY 2018-12-10 09:46:53 +01:00
Matthew Honnibal
0994dc50d8 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-12-10 05:35:01 +00:00
Matthew Honnibal
24f2e9bc07 Tweak training params 2018-12-09 17:08:58 +00:00
Matthew Honnibal
1b1a1af193 Fix printing in spacy train 2018-12-09 06:03:49 +01:00
Matthew Honnibal
cb16b78b0d Set dropout rate to 0.2 2018-12-08 19:59:11 +01:00
Ines Montani
ffdd5e964f
Small CLI improvements (#3030)
* Add todo

* Auto-format

* Update wasabi pin

* Format training results with wasabi

* Remove loading animation from model saving

Currently behaves weirdly

* Inline messages

* Remove unnecessary path2str

Already taken care of by printer

* Inline messages in CLI

* Remove unused function

* Move loading indicator into loading function

* Check for invalid whitespace entities
2018-12-08 11:49:43 +01:00
Matthew Honnibal
b2bfd1e1c8 Move dropout and batch sizes out of global scope in train cmd 2018-12-07 20:54:35 +01:00
Matthew Honnibal
427c0693c8 Fix missing comma in init-model command 2018-12-06 22:48:31 +01:00
Matthew Honnibal
0a60726215 Remove cytoolz usage in CLI 2018-12-06 20:37:00 +01:00
Matthew Honnibal
711f108532 Fix cytoolz import cytoolz 2018-12-06 16:04:12 +01:00
Gavriel Loria
9c8c4287bf Accept iob2 and allow generic whitespace (#2999)
* accept non-pipe whitespace as delimiter; allow iob2 filename

* added small documentation note for IOB2 allowance

* added contributor agreement
2018-12-06 15:50:25 +01:00
Ines Montani
5b2741f751 Remove unused cytoolz / itertools imports 2018-12-03 02:12:07 +01:00
Ines Montani
f37863093a 💫 Replace ujson, msgpack and dill/pickle/cloudpickle with srsly (#3003)
Remove hacks and wrappers, keep code in sync across our libraries and move spaCy a few steps closer to only depending on packages with binary wheels 🎉

See here: https://github.com/explosion/srsly

    Serialization is hard, especially across Python versions and multiple platforms. After dealing with many subtle bugs over the years (encodings, locales, large files) our libraries like spaCy and Prodigy have steadily grown a number of utility functions to wrap the multiple serialization formats we need to support (especially json, msgpack and pickle). These wrapping functions ended up duplicated across our codebases, so we wanted to put them in one place.

    At the same time, we noticed that having a lot of small dependencies was making maintainence harder, and making installation slower. To solve this, we've made srsly standalone, by including the component packages directly within it. This way we can provide all the serialization utilities we need in a single binary wheel.

    srsly currently includes forks of the following packages:

        ujson
        msgpack
        msgpack-numpy
        cloudpickle



* WIP: replace json/ujson with srsly

* Replace ujson in examples

Use regular json instead of srsly to make code easier to read and follow

* Update requirements

* Fix imports

* Fix typos

* Replace msgpack with srsly

* Fix warning
2018-12-03 01:28:22 +01:00
Matthew Honnibal
d9d339186b Fix dropout and batch-size defaults 2018-12-01 13:42:35 +00:00
Ines Montani
5c966d0874 Simplify function 2018-12-01 04:59:12 +01:00
Ines Montani
ce7eec846b Move CLi-specific Markdown helper to CLI 2018-12-01 04:55:48 +01:00
Matthew Honnibal
3139b020b5 Fix train script 2018-11-30 22:17:08 +00:00
Matthew Honnibal
4aa1002546 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-11-30 20:58:51 +00:00
Matthew Honnibal
6bd1cc57ee Increase length limit for pretrain 2018-11-30 20:58:18 +00:00
Ines Montani
37c7c85a86 💫 New JSON helpers, training data internals & CLI rewrite (#2932)
* Support nowrap setting in util.prints

* Tidy up and fix whitespace

* Simplify script and use read_jsonl helper

* Add JSON schemas (see #2928)

* Deprecate Doc.print_tree

Will be replaced with Doc.to_json, which will produce a unified format

* Add Doc.to_json() method (see #2928)

Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.

* Remove outdated test

* Add write_json and write_jsonl helpers

* WIP: Update spacy train

* Tidy up spacy train

* WIP: Use wasabi for formatting

* Add GoldParse helpers for JSON format

* WIP: add debug-data command

* Fix typo

* Add missing import

* Update wasabi pin

* Add missing import

* 💫 Refactor CLI (#2943)

To be merged into #2932.

## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)

### Types of change
enhancement

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Update wasabi pin

* Delete old test

* Update errors

* Fix typo

* Tidy up and format remaining code

* Fix formatting

* Improve formatting of messages

* Auto-format remaining code

* Add tok2vec stuff to spacy.train

* Fix typo

* Update wasabi pin

* Fix path checks for when train() is called as function

* Reformat and tidy up pretrain script

* Update argument annotations

* Raise error if model language doesn't match lang

* Document new train command
2018-11-30 20:16:14 +01:00
Ines Montani
d33953037e
💫 Port master changes over to develop (#2979)
* Create aryaprabhudesai.md (#2681)

* Update _install.jade (#2688)

Typo fix: "models" -> "model"

* Add FAC to spacy.explain (resolves #2706)

* Remove docstrings for deprecated arguments (see #2703)

* When calling getoption() in conftest.py, pass a default option (#2709)

* When calling getoption() in conftest.py, pass a default option

This is necessary to allow testing an installed spacy by running:

  pytest --pyargs spacy

* Add contributor agreement

* update bengali token rules for hyphen and digits (#2731)

* Less norm computations in token similarity (#2730)

* Less norm computations in token similarity

* Contributor agreement

* Remove ')' for clarity (#2737)

Sorry, don't mean to be nitpicky, I just noticed this when going through the CLI and thought it was a quick fix. That said, if this was intention than please let me know.

* added contributor agreement for mbkupfer (#2738)

* Basic support for Telugu language (#2751)

* Lex _attrs for polish language (#2750)

* Signed spaCy contributor agreement

* Added polish version of english lex_attrs

* Introduces a bulk merge function, in order to solve issue #653 (#2696)

* Fix comment

* Introduce bulk merge to increase performance on many span merges

* Sign contributor agreement

* Implement pull request suggestions

* Describe converters more explicitly (see #2643)

* Add multi-threading note to Language.pipe (resolves #2582) [ci skip]

* Fix formatting

* Fix dependency scheme docs (closes #2705) [ci skip]

* Don't set stop word in example (closes #2657) [ci skip]

* Add words to portuguese language _num_words (#2759)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Update Indonesian model (#2752)

* adding e-KTP in tokenizer exceptions list

* add exception token

* removing lines with containing space as it won't matter since we use .split() method in the end, added new tokens in exception

* add tokenizer exceptions list

* combining base_norms with norm_exceptions

* adding norm_exception

* fix double key in lemmatizer

* remove unused import on punctuation.py

* reformat stop_words to reduce number of lines, improve readibility

* updating tokenizer exception

* implement is_currency for lang/id

* adding orth_first_upper in tokenizer_exceptions

* update the norm_exception list

* remove bunch of abbreviations

* adding contributors file

* Fixed spaCy+Keras example (#2763)

* bug fixes in keras example

* created contributor agreement

* Adding French hyphenated first name (#2786)

* Fix typo (closes #2784)

* Fix typo (#2795) [ci skip]

Fixed typo on line 6 "regcognizer --> recognizer"

* Adding basic support for Sinhala language. (#2788)

* adding Sinhala language package, stop words, examples and lex_attrs.

* Adding contributor agreement

* Updating contributor agreement

* Also include lowercase norm exceptions

* Fix error (#2802)

* Fix error
ValueError: cannot resize an array that references or is referenced
by another array in this way.  Use the resize function

* added spaCy Contributor Agreement

* Add charlax's contributor agreement (#2805)

* agreement of contributor, may I introduce a tiny pl languge contribution (#2799)

* Contributors agreement

* Contributors agreement

* Contributors agreement

* Add jupyter=True to displacy.render in documentation (#2806)

* Revert "Also include lowercase norm exceptions"

This reverts commit 70f4e8adf3.

* Remove deprecated encoding argument to msgpack

* Set up dependency tree pattern matching skeleton (#2732)

* Fix bug when too many entity types. Fixes #2800

* Fix Python 2 test failure

* Require older msgpack-numpy

* Restore encoding arg on msgpack-numpy

* Try to fix version pin for msgpack-numpy

* Update Portuguese Language (#2790)

* Add words to portuguese language _num_words

* Add words to portuguese language _num_words

* Portuguese - Add/remove stopwords, fix tokenizer, add currency symbols

* Extended punctuation and norm_exceptions in the Portuguese language

* Correct error in spacy universe docs concerning spacy-lookup (#2814)

* Update Keras Example for (Parikh et al, 2016) implementation  (#2803)

* bug fixes in keras example

* created contributor agreement

* baseline for Parikh model

* initial version of parikh 2016 implemented

* tested asymmetric models

* fixed grevious error in normalization

* use standard SNLI test file

* begin to rework parikh example

* initial version of running example

* start to document the new version

* start to document the new version

* Update Decompositional Attention.ipynb

* fixed calls to similarity

* updated the README

* import sys package duh

* simplified indexing on mapping word to IDs

* stupid python indent error

* added code from https://github.com/tensorflow/tensorflow/issues/3388 for tf bug workaround

* Fix typo (closes #2815) [ci skip]

* Update regex version dependency

* Set version to 2.0.13.dev3

* Skip seemingly problematic test

* Remove problematic test

* Try previous version of regex

* Revert "Remove problematic test"

This reverts commit bdebbef455.

* Unskip test

* Try older version of regex

* 💫 Update training examples and use minibatching (#2830)

<!--- Provide a general summary of your changes in the title. -->

## Description
Update the training examples in `/examples/training` to show usage of spaCy's `minibatch` and `compounding` helpers ([see here](https://spacy.io/usage/training#tips-batch-size) for details). The lack of batching in the examples has caused some confusion in the past, especially for beginners who would copy-paste the examples, update them with large training sets and experienced slow and unsatisfying results.

### Types of change
enhancements

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Visual C++ link updated (#2842) (closes #2841) [ci skip]

* New landing page

* Add contribution agreement

* Correcting lang/ru/examples.py (#2845)

* Correct some grammatical inaccuracies in lang\ru\examples.py; filled Contributor Agreement

* Correct some grammatical inaccuracies in lang\ru\examples.py

* Move contributor agreement to separate file

* Set version to 2.0.13.dev4

* Add Persian(Farsi) language support (#2797)

* Also include lowercase norm exceptions

* Remove in favour of https://github.com/explosion/spaCy/graphs/contributors

* Rule-based French Lemmatizer (#2818)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

Add a rule-based French Lemmatizer following the english one and the excellent PR for [greek language optimizations](https://github.com/explosion/spaCy/pull/2558) to adapt the Lemmatizer class.

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

- Lemma dictionary used can be found [here](http://infolingu.univ-mlv.fr/DonneesLinguistiques/Dictionnaires/telechargement.html), I used the XML version.
- Add several files containing exhaustive list of words for each part of speech 
- Add some lemma rules
- Add POS that are not checked in the standard Lemmatizer, i.e PRON, DET, ADV and AUX
- Modify the Lemmatizer class to check in lookup table as a last resort if POS not mentionned
- Modify the lemmatize function to check in lookup table as a last resort
- Init files are updated so the model can support all the functionalities mentioned above
- Add words to tokenizer_exceptions_list.py in respect to regex used in tokenizer_exceptions.py

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [X] I have submitted the spaCy Contributor Agreement.
- [X] I ran the tests, and all new and existing tests passed.
- [X] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Set version to 2.0.13

* Fix formatting and consistency

* Update docs for new version [ci skip]

* Increment version [ci skip]

* Add info on wheels [ci skip]

* Adding "This is a sentence" example to Sinhala (#2846)

* Add wheels badge

* Update badge [ci skip]

* Update README.rst [ci skip]

* Update murmurhash pin

* Increment version to 2.0.14.dev0

* Update GPU docs for v2.0.14

* Add wheel to setup_requires

* Import prefer_gpu and require_gpu functions from Thinc

* Add tests for prefer_gpu() and require_gpu()

* Update requirements and setup.py

* Workaround bug in thinc require_gpu

* Set version to v2.0.14

* Update push-tag script

* Unhack prefer_gpu

* Require thinc 6.10.6

* Update prefer_gpu and require_gpu docs [ci skip]

* Fix specifiers for GPU

* Set version to 2.0.14.dev1

* Set version to 2.0.14

* Update Thinc version pin

* Increment version

* Fix msgpack-numpy version pin

* Increment version

* Update version to 2.0.16

* Update version [ci skip]

* Redundant ')' in the Stop words' example (#2856)

<!--- Provide a general summary of your changes in the title. -->

## Description
<!--- Use this section to describe your changes. If your changes required
testing, include information about the testing environment and the tests you
ran. If your test fixes a bug reported in an issue, don't forget to include the
issue number. If your PR is still a work in progress, that's totally fine – just
include a note to let us know. -->

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [ ] I have submitted the spaCy Contributor Agreement.
- [ ] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Documentation improvement regarding joblib and SO (#2867)

Some documentation improvements

## Description
1. Fixed the dead URL to joblib
2. Fixed Stack Overflow brand name (with space)

### Types of change
Documentation

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* raise error when setting overlapping entities as doc.ents (#2880)

* Fix out-of-bounds access in NER training

The helper method state.B(1) gets the index of the first token of the
buffer, or -1 if no such token exists. Normally this is safe because we
pass this to functions like state.safe_get(), which returns an empty
token. Here we used it directly as an array index, which is not okay!

This error may have been the cause of out-of-bounds access errors during
training. Similar errors may still be around, so much be hunted down.
Hunting this one down took a long time...I printed out values across
training runs and diffed, looking for points of divergence between
runs, when no randomness should be allowed.

* Change PyThaiNLP Url (#2876)

* Fix missing comma

* Add example showing a fix-up rule for space entities

* Set version to 2.0.17.dev0

* Update regex version

* Revert "Update regex version"

This reverts commit 62358dd867.

* Try setting older regex version, to align with conda

* Set version to 2.0.17

* Add spacy-js to universe [ci-skip]

* Add spacy-raspberry to universe (closes #2889)

* Add script to validate universe json [ci skip]

* Removed space in docs + added contributor indo (#2909)

* - removed unneeded space in documentation

* - added contributor info

* Allow input text of length up to max_length, inclusive (#2922)

* Include universe spec for spacy-wordnet component (#2919)

* feat: include universe spec for spacy-wordnet component

* chore: include spaCy contributor agreement

* Minor formatting changes [ci skip]

* Fix image [ci skip]

Twitter URL doesn't work on live site

* Check if the word is in one of the regular lists specific to each POS (#2886)

* 💫 Create random IDs for SVGs to prevent ID clashes (#2927)

Resolves #2924.

## Description
Fixes problem where multiple visualizations in Jupyter notebooks would have clashing arc IDs, resulting in weirdly positioned arc labels. Generating a random ID prefix so even identical parses won't receive the same IDs for consistency (even if effect of ID clash isn't noticable here.)

### Types of change
bug fix

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix typo [ci skip]

* fixes symbolic link on py3 and windows (#2949)

* fixes symbolic link on py3 and windows
during setup of spacy using command
python -m spacy link en_core_web_sm en
closes #2948

* Update spacy/compat.py

Co-Authored-By: cicorias <cicorias@users.noreply.github.com>

* Fix formatting

* Update universe [ci skip]

* Catalan Language Support (#2940)

* Catalan language Support

* Ddding Catalan to documentation

* Sort languages alphabetically [ci skip]

* Update tests for pytest 4.x (#2965)

<!--- Provide a general summary of your changes in the title. -->

## Description
- [x] Replace marks in params for pytest 4.0 compat ([see here](https://docs.pytest.org/en/latest/deprecations.html#marks-in-pytest-mark-parametrize))
- [x] Un-xfail passing tests (some fixes in a recent update resolved a bunch of issues, but tests were apparently never updated here)

### Types of change
<!-- What type of change does your PR cover? Is it a bug fix, an enhancement
or new feature, or a change to the documentation? -->

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Fix regex pin to harmonize with conda (#2964)

* Update README.rst

* Fix bug where Vocab.prune_vector did not use 'batch_size' (#2977)

Fixes #2976

* Fix typo

* Fix typo

* Remove duplicate file

* Require thinc 7.0.0.dev2

Fixes bug in gpu_ops that would use cupy instead of numpy on CPU

* Add missing import

* Fix error IDs

* Fix tests
2018-11-29 16:30:29 +01:00
Matthew Honnibal
681258e29b Add support for pretrained tok2vec to ud-train 2018-11-29 14:54:47 +00:00
Matthew Honnibal
008e1ee1dd Update pretrain command 2018-11-29 12:36:43 +00:00
Matthew Honnibal
61e435610e
💫 Feature/improve pretraining (#2971)
* Improve spacy pretrain script

* Implement BERT-style 'masked language model' objective. Much better
results.

* Improve logging.

* Add length cap for documents, to avoid memory errors.

* Require thinc 7.0.0.dev1

* Require thinc 7.0.0.dev1

* Add argument for using pretrained vectors

* Fix defaults

* Fix syntax error

* Improve spacy pretrain script

* Implement BERT-style 'masked language model' objective. Much better
results.

* Improve logging.

* Add length cap for documents, to avoid memory errors.

* Require thinc 7.0.0.dev1

* Require thinc 7.0.0.dev1

* Add argument for using pretrained vectors

* Fix defaults

* Fix syntax error

* Tweak pretraining script

* Fix data limits in spacy.gold

* Fix pretrain script
2018-11-28 18:04:58 +01:00
Matthew Honnibal
ef0820827a
Update hyper-parameters after NER random search (#2972)
These experiments were completed a few weeks ago, but I didn't make the PR, pending model release.

    Token vector width: 128->96
    Hidden width: 128->64
    Embed size: 5000->2000
    Dropout: 0.2->0.1
    Updated optimizer defaults (unclear how important?)

This should improve speed, model size and load time, while keeping
similar or slightly better accuracy.

The tl;dr is we prefer to prevent over-fitting by reducing model size,
rather than using more dropout.
2018-11-27 18:49:52 +01:00
Ines Montani
b4581435f6 Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2018-11-16 13:08:22 +01:00
Ines Montani
e2f75eb492 Fix message formatting 2018-11-16 13:08:20 +01:00
Matthew Honnibal
2874b8efd8 Fix tok2vec loading in spacy train 2018-11-15 23:34:54 +00:00
Matthew Honnibal
2ddd428834 Fix pretrain script 2018-11-15 23:34:35 +00:00