Improve GoldParse NER alignment by including all cases where the start
and end of the NER span can be aligned, regardless of internal
tokenization differences.
To do this, convert BILUO tags to character offsets, check start/end
alignment with `doc.char_span()`, and assign the BILUO tags for the
aligned spans. Alignment for `O/-` tags is handled through the
one-to-one and multi alignments.
* Matcher support for Span, as well as Doc #5056
* Removes an import unused
* Signed contributors agreement
* Code optimization and better test
* Add error message for bad Matcher call argument
* Fix merging
* Add Doc init from list of words and text
Add an option to initialize a `Doc` from a text and list of words where
the words may or may not include all whitespace tokens. If the text and
words are mismatched, raise an error.
* Fix error code
* Remove all whitespace before aligning words/text
* Move words/text init to util function
* Update error message
* Rename to get_words_and_spaces
* Fix formatting
* Modify Vector.resize to work with cupy
Modify `Vectors.resize` to work with cupy. Modify behavior when resizing
to a different vector dimension so that individual vectors are truncated
or extended with zeros instead of having the original values filled into
the new shape without regard for the original axes.
* Update spacy/tests/vocab_vectors/test_vectors.py
Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
* Improve token head verification
Improve the verification for valid token heads when heads are set:
* in `Token.head`: heads come from the same document
* in `Doc.from_array()`: head indices are within the bounds of the
document
* Improve error message
* fix grad_clip naming
* cleaning up pretrained_vectors out of cfg
* further refactoring Model init's
* move Model building out of pipes
* further refactor to require a model config when creating a pipe
* small fixes
* making cfg in nn_parser more consistent
* fixing nr_class for parser
* fixing nn_parser's nO
* fix printing of loss
* architectures in own file per type, consistent naming
* convenience methods default_tagger_config and default_tok2vec_config
* let create_pipe access default config if available for that component
* default_parser_config
* move defaults to separate folder
* allow reading nlp from package or dir with argument 'name'
* architecture spacy.VocabVectors.v1 to read static vectors from file
* cleanup
* default configs for nel, textcat, morphologizer, tensorizer
* fix imports
* fixing unit tests
* fixes and clean up
* fixing defaults, nO, fix unit tests
* restore parser IO
* fix IO
* 'fix' serialization test
* add *.cfg to manifest
* fix example configs with additional arguments
* replace Morpohologizer with Tagger
* add IO bit when testing overfitting of tagger (currently failing)
* fix IO - don't initialize when reading from disk
* expand overfitting tests to also check IO goes OK
* remove dropout from HashEmbed to fix Tagger performance
* add defaults for sentrec
* update thinc
* always pass a Model instance to a Pipe
* fix piped_added statement
* remove obsolete W029
* remove obsolete errors
* restore byte checking tests (work again)
* clean up test
* further test cleanup
* convert from config to Model in create_pipe
* bring back error when component is not initialized
* cleanup
* remove calls for nlp2.begin_training
* use thinc.api in imports
* allow setting charembed's nM and nC
* fix for hardcoded nM/nC + unit test
* formatting fixes
* trigger build
* Restructure tag maps for MorphAnalysis changes
Prepare tag maps for upcoming MorphAnalysis changes that allow
arbritrary features.
* Use default tag map rather than duplicating for ca / uk / vi
* Import tag map into defaults for ga
* Modify tag maps so all morphological fields and features are strings
* Move features from `"Other"` to the top level
* Rewrite tuples as strings separated by `","`
* Rewrite morph symbols for fr lemmatizer as strings
* Export MorphAnalysis under spacy.tokens
* Modify morphology to support arbitrary features
Modify `Morphology` and `MorphAnalysis` so that arbitrary features are
supported.
* Modify `MorphAnalysisC` so that it can support arbitrary features and
multiple values per field. `MorphAnalysisC` is redesigned to contain:
* key: hash of UD FEATS string of morphological features
* array of `MorphFeatureC` structs that each contain a hash of `Field`
and `Field=Value` for a given morphological feature, which makes it
possible to:
* find features by field
* represent multiple values for a given field
* `get_field()` is renamed to `get_by_field()` and is no longer `nogil`.
Instead a new helper function `get_n_by_field()` is `nogil` and returns
`n` features by field.
* `MorphAnalysis.get()` returns all possible values for a field as a
list of individual features such as `["Tense=Pres", "Tense=Past"]`.
* `MorphAnalysis`'s `str()` and `repr()` are the UD FEATS string.
* `Morphology.feats_to_dict()` converts a UD FEATS string to a dict
where:
* Each field has one entry in the dict
* Multiple values remain separated by a separator in the value string
* `Token.morph_` returns the UD FEATS string and you can set
`Token.morph_` with a UD FEATS string or with a tag map dict.
* Modify get_by_field to use np.ndarray
Modify `get_by_field()` to use np.ndarray. Remove `max_results` from
`get_n_by_field()` and always iterate over all the fields.
* Rewrite without MorphFeatureC
* Add shortcut for existing feats strings as keys
Add shortcut for existing feats strings as keys in `Morphology.add()`.
* Check for '_' as empty analysis when adding morphs
* Extend helper converters in Morphology
Add and extend helper converters that convert and normalize between:
* UD FEATS strings (`"Case=dat,gen|Number=sing"`)
* per-field dict of feats (`{"Case": "dat,gen", "Number": "sing"}`)
* list of individual features (`["Case=dat", "Case=gen",
"Number=sing"]`)
All converters sort fields and values where applicable.
* label in span not writable anymore
* Revert "label in span not writable anymore"
This reverts commit ab442338c8.
* provide more friendly error msg for parsing file
Iterate over lr_edges until all heads are within the current sentence.
Instead of iterating over them for a fixed number of iterations, check
whether the sentence boundaries are correct for the heads and stop when
all are correct. Stop after a maximum of 10 iterations, providing a
warning in this case since the sentence boundaries may not be correct.
* Generalize handling of tokenizer special cases
Handle tokenizer special cases more generally by using the Matcher
internally to match special cases after the affix/token_match
tokenization is complete.
Instead of only matching special cases while processing balanced or
nearly balanced prefixes and suffixes, this recognizes special cases in
a wider range of contexts:
* Allows arbitrary numbers of prefixes/affixes around special cases
* Allows special cases separated by infixes
Existing tests/settings that couldn't be preserved as before:
* The emoticon '")' is no longer a supported special case
* The emoticon ':)' in "example:)" is a false positive again
When merged with #4258 (or the relevant cache bugfix), the affix and
token_match properties should be modified to flush and reload all
special cases to use the updated internal tokenization with the Matcher.
* Remove accidentally added test case
* Really remove accidentally added test
* Reload special cases when necessary
Reload special cases when affixes or token_match are modified. Skip
reloading during initialization.
* Update error code number
* Fix offset and whitespace in Matcher special cases
* Fix offset bugs when merging and splitting tokens
* Set final whitespace on final token in inserted special case
* Improve cache flushing in tokenizer
* Separate cache and specials memory (temporarily)
* Flush cache when adding special cases
* Repeated `self._cache = PreshMap()` and `self._specials = PreshMap()`
are necessary due to this bug:
https://github.com/explosion/preshed/issues/21
* Remove reinitialized PreshMaps on cache flush
* Update UD bin scripts
* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)
* Use special Matcher only for cases with affixes
* Reinsert specials cache checks during normal tokenization for special
cases as much as possible
* Additionally include specials cache checks while splitting on infixes
* Since the special Matcher needs consistent affix-only tokenization
for the special cases themselves, introduce the argument
`with_special_cases` in order to do tokenization with or without
specials cache checks
* After normal tokenization, postprocess with special cases Matcher for
special cases containing affixes
* Replace PhraseMatcher with Aho-Corasick
Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.
The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.
Fixes#4308.
* Restore support for pickling
* Fix internal keyword add/remove for numpy arrays
* Add test for #4248, clean up test
* Improve efficiency of special cases handling
* Use PhraseMatcher instead of Matcher
* Improve efficiency of merging/splitting special cases in document
* Process merge/splits in one pass without repeated token shifting
* Merge in place if no splits
* Update error message number
* Remove UD script modifications
Only used for timing/testing, should be a separate PR
* Remove final traces of UD script modifications
* Update UD bin scripts
* Update imports for `bin/`
* Add all currently supported languages
* Update subtok merger for new Matcher validation
* Modify blinded check to look at tokens instead of lemmas (for corpora
with tokens but not lemmas like Telugu)
* Add missing loop for match ID set in search loop
* Remove cruft in matching loop for partial matches
There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.
* Replace dict trie with MapStruct trie
* Fix how match ID hash is stored/added
* Update fix for match ID vocab
* Switch from map_get_unless_missing to map_get
* Switch from numpy array to Token.get_struct_attr
Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.
Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)
* Restructure imports to export find_matches
* Implement full remove()
Remove unnecessary trie paths and free unused maps.
Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.
* Switch to PhraseMatcher.find_matches
* Switch to local cdef functions for span filtering
* Switch special case reload threshold to variable
Refer to variable instead of hard-coded threshold
* Move more of special case retokenize to cdef nogil
Move as much of the special case retokenization to nogil as possible.
* Rewrap sort as stdsort for OS X
* Rewrap stdsort with specific types
* Switch to qsort
* Fix merge
* Improve cmp functions
* Fix realloc
* Fix realloc again
* Initialize span struct while retokenizing
* Temporarily skip retokenizing
* Revert "Move more of special case retokenize to cdef nogil"
This reverts commit 0b7e52c797.
* Revert "Switch to qsort"
This reverts commit a98d71a942.
* Fix specials check while caching
* Modify URL test with emoticons
The multiple suffix tests result in the emoticon `:>`, which is now
retokenized into one token as a special case after the suffixes are
split off.
* Refactor _apply_special_cases()
* Use cdef ints for span info used in multiple spots
* Modify _filter_special_spans() to prefer earlier
Parallel to #4414, modify _filter_special_spans() so that the earlier
span is preferred for overlapping spans of the same length.
* Replace MatchStruct with Entity
Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.
* Replace Entity with more general SpanC
* Replace MatchStruct with SpanC
* Add error in debug-data if no dev docs are available (see #4575)
* Update azure-pipelines.yml
* Revert "Update azure-pipelines.yml"
This reverts commit ed1060cf59.
* Use latest wasabi
* Reorganise install_requires
* add dframcy to universe.json (#4580)
* Update universe.json [ci skip]
* Fix multiprocessing for as_tuples=True (#4582)
* Fix conllu script (#4579)
* force extensions to avoid clash between example scripts
* fix arg order and default file encoding
* add example config for conllu script
* newline
* move extension definitions to main function
* few more encodings fixes
* Add load_from_docbin example [ci skip]
TODO: upload the file somewhere
* Update README.md
* Add warnings about 3.8 (resolves#4593) [ci skip]
* Fixed typo: Added space between "recognize" and "various" (#4600)
* Fix DocBin.merge() example (#4599)
* Replace function registries with catalogue (#4584)
* Replace functions registries with catalogue
* Update __init__.py
* Fix test
* Revert unrelated flag [ci skip]
* Bugfix/dep matcher issue 4590 (#4601)
* add contributor agreement for prilopes
* add test for issue #4590
* fix on_match params for DependencyMacther (#4590)
* Minor updates to language example sentences (#4608)
* Add punctuation to Spanish example sentences
* Combine multilanguage examples for lang xx
* Add punctuation to nb examples
* Always realloc to a larger size
Avoid potential (unlikely) edge case and cymem error seen in #4604.
* Add error in debug-data if no dev docs are available (see #4575)
* Update debug-data for GoldCorpus / Example
* Ignore None label in misaligned NER data
* OrigAnnot class instead of gold.orig_annot list of zipped tuples
* from_orig to replace from_annot_tuples
* rename to RawAnnot
* some unit tests for GoldParse creation and internal format
* removing orig_annot and switching to lists instead of tuple
* rewriting tuples to use RawAnnot (+ debug statements, WIP)
* fix pop() changing the data
* small fixes
* pop-append fixes
* return RawAnnot for existing GoldParse to have uniform interface
* clean up imports
* fix merge_sents
* add unit test for 4402 with new structure (not working yet)
* introduce DocAnnot
* typo fixes
* add unit test for merge_sents
* rename from_orig to from_raw
* fixing unit tests
* fix nn parser
* read_annots to produce text, doc_annot pairs
* _make_golds fix
* rename golds_to_gold_annots
* small fixes
* fix encoding
* have golds_to_gold_annots use DocAnnot
* missed a spot
* merge_sents as function in DocAnnot
* allow specifying only part of the token-level annotations
* refactor with Example class + underlying dicts
* pipeline components to work with Example objects (wip)
* input checking
* fix yielding
* fix calls to update
* small fixes
* fix scorer unit test with new format
* fix kwargs order
* fixes for ud and conllu scripts
* fix reading data for conllu script
* add in proper errors (not fixed numbering yet to avoid merge conflicts)
* fixing few more small bugs
* fix EL script
* Add work in progress
* Update analysis helpers and component decorator
* Fix porting of docstrings for Python 2
* Fix docstring stuff on Python 2
* Support meta factories when loading model
* Put auto pipeline analysis behind flag for now
* Analyse pipes on remove_pipe and replace_pipe
* Move analysis to root for now
Try to find a better place for it, but it needs to go for now to avoid circular imports
* Simplify decorator
Don't return a wrapped class and instead just write to the object
* Update existing components and factories
* Add condition in factory for classes vs. functions
* Add missing from_nlp classmethods
* Add "retokenizes" to printed overview
* Update assigns/requires declarations of builtins
* Only return data if no_print is enabled
* Use multiline table for overview
* Don't support Span
* Rewrite errors/warnings and move them to spacy.errors
* Implement new API for {Phrase}Matcher.add (backwards-compatible)
* Update docs
* Also update DependencyMatcher.add
* Update internals
* Rewrite tests to use new API
* Add basic check for common mistake
Raise error with suggestion if user likely passed in a pattern instead of a list of patterns
* Fix typo [ci skip]
* Error for ill-formed input to iob_to_biluo()
Check for empty label in iob_to_biluo(), which can result from
ill-formed input.
* Check for empty NER label in debug-data
* fix overflow error on windows
* more documentation & logging fixes
* md fix
* 3 different limit parameters to play with execution time
* bug fixes directory locations
* small fixes
* exclude dev test articles from prior probabilities stats
* small fixes
* filtering wikidata entities, removing numeric and meta items
* adding aliases from wikidata also to the KB
* fix adding WD aliases
* adding also new aliases to previously added entities
* fixing comma's
* small doc fixes
* adding subclassof filtering
* append alias functionality in KB
* prevent appending the same entity-alias pair
* fix for appending WD aliases
* remove date filter
* remove unnecessary import
* small corrections and reformatting
* remove WD aliases for now (too slow)
* removing numeric entities from training and evaluation
* small fixes
* shortcut during prediction if there is only one candidate
* add counts and fscore logging, remove FP NER from evaluation
* fix entity_linker.predict to take docs instead of single sentences
* remove enumeration sentences from the WP dataset
* entity_linker.update to process full doc instead of single sentence
* spelling corrections and dump locations in readme
* NLP IO fix
* reading KB is unnecessary at the end of the pipeline
* small logging fix
* remove empty files
* Move test
* Allow default in Lookups.get_table
* Start with blank tables in Lookups.from_bytes
* Refactor lemmatizer to hold instance of Lookups
* Get lookups table within the lemmatization methods to make sure it references the correct table (even if the table was replaced or modified, e.g. when loading a model from disk)
* Deprecate other arguments on Lemmatizer.__init__ and expect Lookups for consistency
* Remove old and unsupported Lemmatizer.load classmethod
* Refactor language-specific lemmatizers to inherit as much as possible from base class and override only what they need
* Update tests and docs
* Fix more tests
* Fix lemmatizer
* Upgrade pytest to try and fix weird CI errors
* Try pytest 4.6.5
* Replace PhraseMatcher with Aho-Corasick
Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.
The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.
Fixes#4308.
* Restore support for pickling
* Fix internal keyword add/remove for numpy arrays
* Add missing loop for match ID set in search loop
* Remove cruft in matching loop for partial matches
There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.
* Replace dict trie with MapStruct trie
* Fix how match ID hash is stored/added
* Update fix for match ID vocab
* Switch from map_get_unless_missing to map_get
* Switch from numpy array to Token.get_struct_attr
Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.
Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)
* Restructure imports to export find_matches
* Implement full remove()
Remove unnecessary trie paths and free unused maps.
Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.
* Store docs internally only as attr lists
* Reduces size for pickle
* Remove duplicate keywords store
Now that docs are stored as lists of attr hashes, there's no need to
have the duplicate _keywords store.
* remove duplicate unit test
* unit test (currently failing) for issue 4267
* bugfix: ensure doc.ents preserves kb_id annotations
* fix in setting doc.ents with empty label
* rename
* test for presetting an entity to a certain type
* allow overwriting Outside + blocking presets
* fix actions when previous label needs to be kept
* fix default ent_iob in set entities
* cleaner solution with U- action
* remove debugging print statements
* unit tests with explicit transitions and is_valid testing
* remove U- from move_names explicitly
* remove unit tests with pre-trained models that don't work
* remove (working) unit tests with pre-trained models
* clean up unit tests
* move unit tests
* small fixes
* remove two TODO's from doc.ents comments
* Add doc.cats to spacy.gold at the paragraph level
Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.
* `spacy.gold.docs_to_json()` writes `docs.cats`
* `GoldCorpus` reads in cats in each `GoldParse`
* Update instances of gold_tuples to handle cats
Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.
* Add textcat to train CLI
* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
* For binary exclusive classes with provided label: F1 for label
* For 2+ exclusive classes: F1 macro average
* For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI
* Fix handling of unset arguments and config params
Fix handling of unset arguments and model confiug parameters in Scorer
initialization.
* Temporarily add sklearn requirement
* Remove sklearn version number
* Improve Scorer handling of models without textcats
* Fixing Scorer handling of models without textcats
* Update Scorer output for python 2.7
* Modify inf in Scorer for python 2.7
* Auto-format
Also make small adjustments to make auto-formatting with black easier and produce nicer results
* Move error message to Errors
* Update documentation
* Add cats to annotation JSON format [ci skip]
* Fix tpl flag and docs [ci skip]
* Switch to internal roc_auc_score
Switch to internal `roc_auc_score()` adapted from scikit-learn.
* Add AUCROCScore tests and improve errors/warnings
* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors
* Make reduced roc_auc_score functions private
Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.
* Check that data corresponds with multilabel flag
Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.
* Add textcat score to early stopping check
* Add more checks to debug-data for textcat
* Add example training data for textcat
* Add more checks to textcat train CLI
* Check configuration when extending base model
* Fix typos
* Update textcat example data
* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.
Co-authored-by: Ines Montani <ines@ines.io>
* Improve load_language_data helper
* WIP: Add Lookups implementation
* Start moving lemma data over to JSON
* WIP: move data over for more languages
* Convert more languages
* Fix lemmatizer fixtures in tests
* Finish conversion
* Auto-format JSON files
* Fix test for now
* Make sure tables are stored on instance
* Update docstrings
* Update docstrings and errors
* Update test
* Add Lookups.__len__
* Add serialization methods
* Add Lookups.remove_table
* Use msgpack for serialization to disk
* Fix file exists check
* Try using OrderedDict for everything
* Update .flake8 [ci skip]
* Try fixing serialization
* Update test_lookups.py
* Update test_serialize_vocab_strings.py
* Fix serialization for lookups
* Fix lookups
* Fix lookups
* Fix lookups
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Try to fix serialization
* Give up on serialization test
* Xfail more serialization tests for 3.5
* Fix lookups for 2.7
Check for relevant components in the pipeline when Matcher is called,
similar to the checks for PhraseMatcher in #4105.
* keep track of attributes seen in patterns
* when Matcher is called on a Doc, check for is_tagged for LEMMA, TAG,
POS and for is_parsed for DEP
* Fix typo in rule-based matching docs
* Improve token pattern checking without validation
Add more detailed token pattern checks without full JSON pattern validation and
provide more detailed error messages.
Addresses #4070 (also related: #4063, #4100).
* Check whether top-level attributes in patterns and attr for PhraseMatcher are
in token pattern schema
* Check whether attribute value types are supported in general (as opposed to
per attribute with full validation)
* Report various internal error types (OverflowError, AttributeError, KeyError)
as ValueError with standard error messages
* Check for tagger/parser in PhraseMatcher pipeline for attributes TAG, POS,
LEMMA, and DEP
* Add error messages with relevant details on how to use validate=True or nlp()
instead of nlp.make_doc()
* Support attr=TEXT for PhraseMatcher
* Add NORM to schema
* Expand tests for pattern validation, Matcher, PhraseMatcher, and EntityRuler
* Remove unnecessary .keys()
* Rephrase error messages
* Add another type check to Matcher
Add another type check to Matcher for more understandable error messages
in some rare cases.
* Support phrase_matcher_attr=TEXT for EntityRuler
* Don't use spacy.errors in examples and bin scripts
* Fix error code
* Auto-format
Also try get Azure pipelines to finally start a build :(
* Update errors.py
Co-authored-by: Ines Montani <ines@ines.io>
Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com>
Provide the tokens in the cycle and the first 50 tokens from document in
the error message so it's easier to track down the location of the cycle
in the data.
Addresses feature request in #3698.
* document token ent_kb_id
* document span kb_id
* update pipeline documentation
* prior and context weights as bool's instead
* entitylinker api documentation
* drop for both models
* finish entitylinker documentation
* small fixes
* documentation for KB
* candidate documentation
* links to api pages in code
* small fix
* frequency examples as counts for consistency
* consistent documentation about tensors returned by predict
* add entity linking to usage 101
* add entity linking infobox and KB section to 101
* entity-linking in linguistic features
* small typo corrections
* training example and docs for entity_linker
* predefined nlp and kb
* revert back to similarity encodings for simplicity (for now)
* set prior probabilities to 0 when excluded
* code clean up
* bugfix: deleting kb ID from tokens when entities were removed
* refactor train el example to use either model or vocab
* pretrain_kb example for example kb generation
* add to training docs for KB + EL example scripts
* small fixes
* error numbering
* ensure the language of vocab and nlp stay consistent across serialization
* equality with =
* avoid conflict in errors file
* add error 151
* final adjustements to the train scripts - consistency
* update of goldparse documentation
* small corrections
* push commit
* turn kb_creator into CLI script (wip)
* proper parameters for training entity vectors
* wikidata pipeline split up into two executable scripts
* remove context_width
* move wikidata scripts in bin directory, remove old dummy script
* refine KB script with logs and preprocessing options
* small edits
* small improvements to logging of EL CLI script
* Improve error message when model.from_bytes() dies
When Thinc's model.from_bytes() is called with a mismatched model, often
we get a particularly ungraceful error,
e.g. "AttributeError: FunctionLayer has no attribute G"
This is because we're trying to load the parameters for something like
a LayerNorm layer, and the model architecture has some other layer there
instead. This is obviously terrible, especially since the error *type*
is wrong.
I've changed it to raise a ValueError. The error message is still
probably a bit terse, but it's hard to be sure exactly what's gone
wrong.
* Update spacy/pipeline/pipes.pyx
* Update spacy/pipeline/pipes.pyx
* Update spacy/pipeline/pipes.pyx
* Update spacy/syntax/nn_parser.pyx
* Update spacy/syntax/nn_parser.pyx
* Update spacy/pipeline/pipes.pyx
Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
* Update spacy/pipeline/pipes.pyx
Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
Co-authored-by: Ines Montani <ines@ines.io>
* Add error to `get_vectors_loss` for unsupported loss function of `pretrain`
* Add missing "--loss-func" argument to pretrain docs. Update pretrain plac annotations to match docs.
* Add missing quotation marks
* Add check for empty input file to CLI pretrain
* Raise error if JSONL is not a dict or contains neither `tokens` nor `text` key
* Skip empty values for correct pretrain keys and log a counter as warning
* Add tests for CLI pretrain core function make_docs.
* Add a short hint for the `tokens` key to the CLI pretrain docs
* Add success message to CLI pretrain
* Update model loading to fix the tests
* Skip empty values and do not create docs out of it
* label in span not writable anymore
* more explicit unit test and error message for readonly label
* bit more explanation (view)
* error msg tailored to specific case
* fix None case
* Make serialization methods consistent
exclude keyword argument instead of random named keyword arguments and deprecation handling
* Update docs and add section on serialization fields
<!--- Provide a general summary of your changes in the title. -->
## Description
* tidy up and adjust Cython code to code style
* improve docstrings and make calling `help()` nicer
* add URLs to new docs pages to docstrings wherever possible, mostly to user-facing objects
* fix various typos and inconsistencies in docs
### Types of change
enhancement, docs
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
<!--- Provide a general summary of your changes in the title. -->
## Description
This PR adds the abilility to override custom extension attributes during merging. This will only work for attributes that are writable, i.e. attributes registered with a default value like `default=False` or attribute that have both a getter *and* a setter implemented.
```python
Token.set_extension('is_musician', default=False)
doc = nlp("I like David Bowie.")
with doc.retokenize() as retokenizer:
attrs = {"LEMMA": "David Bowie", "_": {"is_musician": True}}
retokenizer.merge(doc[2:4], attrs=attrs)
assert doc[2].text == "David Bowie"
assert doc[2].lemma_ == "David Bowie"
assert doc[2]._.is_musician
```
### Types of change
enhancement
## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.
* Change retokenize.split() API for heads
* Pass lists as values for attrs in split
* Fix test_doc_split filename
* Add error for mismatched tokens after split
* Raise error if new tokens don't match text
* Fix doc test
* Fix error
* Move deps under attrs
* Fix split tests
* Fix retokenize.split
* Add split one token into several (resolves#2838)
* Improve error message for token splitting
* Make retokenizer.split() tests use a Token object
Change retokenizer.split() to use a Token object, instead of an index.
* Pass Token into retokenize.split()
Tweak retokenize.split() API so that we pass the `Token` object, not the index.
* Fix token.idx in retokenize.split()
* Test that token.idx is correct after split
* Fix token.idx for split tokens
* Fix retokenize.split()
* Fix retokenize.split
* Fix retokenize.split() test
