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Author SHA1 Message Date
Will Frey
8d4129e177
Fix invalid ConsoleLogger.v3 example config (#12498) 
Replace `progress_bar = "all_steps"` with `progress_bar = "eval"`, which is consistent with the default behavior for `spacy.ConsoleLogger.v1` and `spacy.ConsoleLogger.v2`.
 2023-04-04 20:53:07 +02:00
Edward
de32011e4c
Add model-last saving mechanism to pretraining (#12459) 
* Adjust pretrain command

* chane naming and add finally block

* Add unit test

* Add unit test assertions

* Update spacy/training/pretrain.py

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* change finally block

* Add to docs

* Update website/docs/usage/embeddings-transformers.mdx

* Add flag to skip saving model-last

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2023-04-03 15:24:03 +02:00
Adriane Boyd
4a1ec332de
Add Span.kb_id/Span.id strings to Doc/DocBin serialization if set (#12493) 
* Add Span.kb_id/Span.id strings to Doc/DocBin serialization if set

* Format
 2023-04-03 15:11:12 +02:00
Adriane Boyd
4538ceb507
Remove redundant strings.add for Doc.char_span (#12429) 2023-04-03 11:38:56 +02:00
Adriane Boyd
476a2e7a0a
Allow cupy 12.0 for extras (#12490) 2023-03-31 13:48:15 +02:00
Adriane Boyd
69e20ce03d
Fix pickle for ngram suggester (#12486) 2023-03-31 13:43:51 +02:00
Adriane Boyd
140d53649d
Convert values to numpy for label smoothing tests (#12472) 2023-03-31 13:41:41 +02:00
Ye Lei (叶磊)
ce258670b7
Allow passing a Span to displacy.parse_deps (#12477) 
* Allow passing a Span to displacy.parse_deps

* Update docstring

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update API docs

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2023-03-31 09:44:01 +02:00
Daniël de Kok
b734e5314d
Avoid TrainablePipe.finish_update getting called twice during training (#12450) 
* Avoid `TrainablePipe.finish_update` getting called twice during training

PR #12136 fixed an issue where the tok2vec pipe was updated before
gradient were accumulated. However, it introduced a new bug that cause
`finish_update` to be called twice when using the training loop. This
causes a fairly large slowdown.

The `Language.update` method accepts the `sgd` argument for passing an
optimizer. This argument has three possible values:

- `Optimizer`: use the given optimizer to finish pipe updates.
- `None`: use a default optimizer to finish pipe updates.
- `False`: do not finish pipe updates.

However, the latter option was not documented and not valid with the
existing type of `sgd`. I assumed that this was a remnant of earlier
spaCy versions and removed handling of `False`.

However, with that change, we are passing `None` to `Language.update`.
As a result, we were calling `finish_update` in both `Language.update`
and in the training loop after all subbatches are processed.

This change restores proper handling/use of `False`. Moreover, the role
of `False` is now documented and added to the type to avoid future
accidents.

* Fix typo

* Document defaults for `Language.update`
 2023-03-30 09:30:42 +02:00
Raphael Mitsch
d85df9d577
Fix Span.sents for edge case of Span being the only Span in the last sentence of a Doc. (#12484) 2023-03-29 18:54:47 +02:00
kadarakos
372a90885e
Fix spancat-singlelabel score (#12469) 
* debug argmax sort and add span scores

* add missing tests for spanscores
 2023-03-29 08:38:11 +02:00
Edward
dba4e7bece
Add info to stringstore and vocab (#12471) 2023-03-27 13:15:14 +02:00
Adriane Boyd
2fba21be63
Restrict github workflows to explosion (#12470) 2023-03-27 12:44:04 +02:00
sloev / Johannes Valbjørn
fd072533e7
add spacy_onnx_sentiment_english to universe (#12422) 
* add spacy_onnx_sentiment_english to universe

* rename to sentimental-onix

* fix comma json error

* fix typo

* typo fix

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* mention need to download model before example works

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2023-03-27 11:35:14 +02:00
Prajakta Darade
ae7779e830
corrected example code (#12466) 2023-03-27 11:32:49 +02:00
kadarakos
d1474fdd91
add explanation about overwriting behaviour (#12464) 
* add explanation about overwriting behaviour

* Update website/docs/api/spancategorizer.mdx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/spancategorizer.mdx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/spancategorizer.mdx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* format

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2023-03-27 10:27:11 +02:00
Edward
a653dec654
Add info that Vocab and StringStore are not static in docs (#12427) 
* Add size increase info about vocab and stringstore

* Update website/docs/api/stringstore.mdx

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>

* Update website/docs/api/vocab.mdx

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>

* Change wording

---------

Co-authored-by: Raphael Mitsch <r.mitsch@outlook.com>
 2023-03-27 09:18:23 +02:00
Adriane Boyd
fac457a509
Support floret for PretrainVectors (#12435) 
* Support floret for PretrainVectors

* Format
 2023-03-24 16:28:51 +01:00
Adriane Boyd
d0bd3f5ee4
Update Serbian tokenization for UD Serbian SET (#12442) 2023-03-24 16:26:40 +01:00
Vinit Ravishankar
28de85737f
Tagger label smoothing (#12293) 
* add label smoothing

* use True/False instead of floats

* add entropy to debug data

* formatting

* docs

* change test to check difference in distributions

* Update website/docs/api/tagger.mdx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update spacy/pipeline/tagger.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* bool -> float

* update docs

* fix seed

* black

* update tests to use label_smoothing = 0.0

* set default to 0.0, update quickstart

* Update spacy/pipeline/tagger.pyx

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* update morphologizer, tagger test

* fix morph docs

* add url to docs

---------

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
 2023-03-22 12:17:56 +01:00
Ines Montani
b479f8bfa5
Add user survey alert to the top (#12452) 
* Add user survey alert to the top

* Shorter

---------

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-22 11:09:37 +01:00
Raphael Mitsch
3102e2e27a
Entity linking: use SpanGroup instead of Iterable[Span] for mentions (#12344) 
* Convert Candidate from Cython to Python class.

* Format.

* Fix .entity_ typo in _add_activations() usage.

* Change type for mentions to look up entity candidates for to SpanGroup from Iterable[Span].

* Update docs.

* Update spacy/kb/candidate.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update doc string of BaseCandidate.__init__().

* Update spacy/kb/candidate.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Rename Candidate to InMemoryCandidate, BaseCandidate to Candidate.

* Adjust Candidate to support and mandate numerical entity IDs.

* Format.

* Fix docstring and docs.

* Update website/docs/api/kb.mdx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Rename alias -> mention.

* Refactor Candidate attribute names. Update docs and tests accordingly.

* Refacor Candidate attributes and their usage.

* Format.

* Fix mypy error.

* Update error code in line with v4 convention.

* Reverse erroneous changes during merge.

* Update return type in EL tests.

* Re-add Candidate to setup.py.

* Format updated docs.

---------

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-20 12:25:18 +01:00
Raphael Mitsch
e5be5d6092 Merge branch 'v4' into feature/docwise-generator-batching 
# Conflicts:
#	spacy/kb/kb.pyx
#	spacy/kb/kb_in_memory.pyx
#	spacy/ml/models/entity_linker.py
#	spacy/pipeline/entity_linker.py
#	spacy/tests/pipeline/test_entity_linker.py
#	website/docs/api/inmemorylookupkb.mdx
#	website/docs/api/kb.mdx
 2023-03-20 10:50:54 +01:00
Raphael Mitsch
cb79af3a10 Fix merge leftovers. 2023-03-20 10:31:11 +01:00
Raphael Mitsch
73bdeb01e4 Merge branch 'refactor/el-candidates' into feature/docwise-generator-batching 
# Conflicts:
#	spacy/kb/candidate.py
#	spacy/kb/kb.pyx
#	spacy/kb/kb_in_memory.pyx
#	spacy/ml/models/entity_linker.py
#	spacy/pipeline/entity_linker.py
#	spacy/tests/pipeline/test_entity_linker.py
#	website/docs/api/inmemorylookupkb.mdx
#	website/docs/api/kb.mdx
 2023-03-20 10:24:17 +01:00
Raphael Mitsch
9340eb8ad2
Introduce hierarchy for EL Candidate objects (#12341) 
* Convert Candidate from Cython to Python class.

* Format.

* Fix .entity_ typo in _add_activations() usage.

* Update spacy/kb/candidate.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update doc string of BaseCandidate.__init__().

* Update spacy/kb/candidate.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Rename Candidate to InMemoryCandidate, BaseCandidate to Candidate.

* Adjust Candidate to support and mandate numerical entity IDs.

* Format.

* Fix docstring and docs.

* Update website/docs/api/kb.mdx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Rename alias -> mention.

* Refactor Candidate attribute names. Update docs and tests accordingly.

* Refacor Candidate attributes and their usage.

* Format.

* Fix mypy error.

* Update error code in line with v4 convention.

* Update spacy/kb/candidate.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Updated error code.

* Simplify interface for int/str representations.

* Update website/docs/api/kb.mdx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Rename 'alias' to 'mention'.

* Port Candidate and InMemoryCandidate to Cython.

* Remove redundant entry in setup.py.

* Add abstract class check.

* Drop storing mention.

* Update spacy/kb/candidate.pxd

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Fix entity_id refactoring problems in docstrings.

* Drop unused InMemoryCandidate._entity_hash.

* Update docstrings.

* Move attributes out of Candidate.

* Partially fix alias/mention terminology usage. Convert Candidate to interface.

* Remove prior_prob from supported properties in Candidate. Introduce KnowledgeBase.supports_prior_probs().

* Update docstrings related to prior_prob.

* Update alias/mention usage in doc(strings).

* Update spacy/ml/models/entity_linker.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/models/entity_linker.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Mention -> alias renaming. Drop Candidate.mentions(). Drop InMemoryLookupKB.get_alias_candidates() from docs.

* Update docstrings.

* Fix InMemoryCandidate attribute names.

* Update spacy/kb/kb.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/ml/models/entity_linker.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update W401 test.

* Update spacy/errors.py

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Update spacy/kb/kb.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Use Candidate output type for toy generators in the test suite to mimick best practices

* fix docs

* fix import

---------

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-20 00:34:35 +01:00
Adriane Boyd
6ae7618418
Clean up Vocab constructor (#12290) 
* Clean up Vocab constructor

* Change effective type of `strings` from `Iterable[str]` to `Optional[StringStore]`
  * Don't automatically add strings to vocab
* Change default values to `None`
* Remove `**deprecated_kwargs`

* Format
 2023-03-19 23:41:20 +01:00
Sofie Van Landeghem
b83407388a
fix import 2023-03-19 23:34:00 +01:00
Sofie Van Landeghem
0365d3d2e2
fix docs 2023-03-19 23:31:02 +01:00
Sofie Van Landeghem
9e71adc074
Use Candidate output type for toy generators in the test suite to mimick best practices 2023-03-19 23:27:20 +01:00
Raphael Mitsch
faede7155c
Update spacy/kb/kb.pyx 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-17 11:32:41 +01:00
Raphael Mitsch
4d8dce5ba2
Update spacy/errors.py 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-17 11:28:18 +01:00
Adriane Boyd
54c614e116
CI: Separate spacy universe validation into a separate workflow (#12440) 
* Separate spacy universe validation into a separate workflow

* Fix new workflow name
 2023-03-17 10:59:53 +01:00
Adriane Boyd
5f72d6c836
CI: Switch PR back to paths-ignore (#12438) 
Switch PR tests back to paths-ignore but include changes to `.github`
for all PRs rather than trying to figure out complicated
includes+excludes.  Changes to `.github` are relatively rare and should
not be a huge burden for the CI.
 2023-03-17 10:01:49 +01:00
Adriane Boyd
4c5a3a2a7b
Remove autoblack workflow (#12437) 
Now that all PRs have `black` formatting validation, we no longer need the
autoblack workflow.
 2023-03-17 09:35:00 +01:00
Raphael Mitsch
2377b67f81 Update W401 test. 2023-03-17 08:59:52 +01:00
Raphael Mitsch
307bbab285
Update spacy/ml/models/entity_linker.py 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-17 08:58:28 +01:00
Raphael Mitsch
978fbdcee1
Update spacy/kb/kb.pyx 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-17 08:58:17 +01:00
Raphael Mitsch
830939ee64 Fix InMemoryCandidate attribute names. 2023-03-15 10:51:34 +01:00
Raphael Mitsch
80fb0666b9 Update docstrings. 2023-03-15 09:25:41 +01:00
Raphael Mitsch
3cfc1c6acc Mention -> alias renaming. Drop Candidate.mentions(). Drop InMemoryLookupKB.get_alias_candidates() from docs. 2023-03-15 09:23:31 +01:00
Raphael Mitsch
961795d9f1
Update spacy/ml/models/entity_linker.py 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-15 09:20:25 +01:00
Raphael Mitsch
b7b4282821
Update spacy/ml/models/entity_linker.py 
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-15 09:20:07 +01:00
Raphael Mitsch
96b61d0671
Fix EL failure with sentence-crossing entities (#12398) 
* Add test reproducing EL failure in sentence-crossing entities.

* Format.

* Draft fix.

* Format.

* Fix case for len(ent.sents) == 1.

* Format.

* Format.

* Format.

* Fix mypy error.

* Merge EL sentence crossing tests.

* Remove unneeded sentencizer component.

* Fix or ignore mypy issues in test.

* Simplify ent.sents handling.

* Format. Update assert in ent.sents handling.

* Small rewrite

---------

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
 2023-03-14 22:02:49 +01:00
Adriane Boyd
2ce9a220db
Fix --verbose for spacy find-threshold (#12418) 2023-03-14 17:16:49 +01:00
Adriane Boyd
377f601bff
CI: Add all paths before excluding patterns (#12419) 2023-03-14 16:06:08 +01:00
Raphael Mitsch
28dbed64cb Update alias/mention usage in doc(strings). 2023-03-14 13:33:05 +01:00
Raphael Mitsch
e8cab4625c
Fix sentence indexing bug in Span.sents (#12405) 
* Add test for partial sentences in ent.sents.

* Removed unneeded import.

* Format. Simplify code.
 2023-03-14 10:21:53 +01:00
Raphael Mitsch
be858981e6 Update docstrings related to prior_prob. 2023-03-13 17:01:20 +01:00
Raphael Mitsch
4a921766f1 Remove prior_prob from supported properties in Candidate. Introduce KnowledgeBase.supports_prior_probs(). 2023-03-13 16:54:38 +01:00