Commit Graph

6651 Commits

Author SHA1 Message Date
Kabir Khan
93640373c7 Make entity_ruler ent_id resolution 2x faster and add docs for… (#4513)
* Update entityruler.py

* Making ent_id resolution 2x faster and adding docs

* Fixing newlines in docstrings

* Fixing newlines in docstrings
2019-10-25 11:16:42 +02:00
Ines Montani
cc05d9dad6 Auto-format [ci skip] 2019-10-24 16:21:08 +02:00
Ines Montani
73dc63d3bf Tidy up and auto-format [ci skip] 2019-10-24 16:20:48 +02:00
Ines Montani
6dd2832438 Use numpy.frombuffer instead of fromstring
Deprecation warning says we should do this
2019-10-24 16:18:41 +02:00
Ines Montani
9a849fe54e Explicitly catch warning in test 2019-10-24 16:16:27 +02:00
adrianeboyd
1b0bbe4b76 Update tag maps and docs for English and German (#4501)
* Update English tag_map

Update English tag_map based on this conversion table:
https://universaldependencies.org/tagset-conversion/en-penn-uposf.html

* Update German tag_map

Update German tag_map based on this conversion table:
https://universaldependencies.org/tagset-conversion/de-stts-uposf.html

* Add missing Tiger dependencies to glossary

* Add quotes to definition of TO

* Update POS/TAG tables in docs

Update POS/TAG tables for English and German docs using current
information generated from the tag_maps and GLOSSARY.

* Update warning that -PRON- is specific to English

* Revert docs to default JSON output with convert

* Revert "Revert docs to default JSON output with convert"

This reverts commit 6b78c048f1.
2019-10-24 12:56:05 +02:00
Zhuoru Lin
10d88b09bb Bugfix/fix wikidata train entity linker (#4509)
* Fix labels_discard Nonetype iteration error

* Contributor agreement for Zhuoru Lin

* Enhance EntityLinker.predict() to handle labels_discard is None case.
2019-10-24 12:52:59 +02:00
adrianeboyd
8516e9d53b Support train dict format as JSONL (#4471)
* Support train dict format as JSONL

* Add (overly simple) check for dict vs. tuple to read JSONL lines as
either train dicts or train tuples

* Extend JSON/JSONL roundtrip conversion tests using `docs_to_json()`
and `GoldCorpus.train_tuples`

* Revert docs to default JSON output with convert
2019-10-23 16:01:44 +02:00
Matthew Honnibal
ca7f0e669e Set version to v2.2.2.dev1 2019-10-22 20:11:25 +02:00
Matthew Honnibal
9489c5f6b2 Clip most_similar to range [-1, 1] (fixes #4506) (#4507)
* Clip most_similar to range [-1, 1]

* Add/fix vectors tests

* Fix test
2019-10-22 20:10:42 +02:00
Ines Montani
74a19aeb1c Add xfailing test [ci skip] 2019-10-22 18:18:43 +02:00
Matthew Honnibal
3f6cb618a9 Set version to v2.2.2.dev0 2019-10-22 17:47:36 +02:00
Sofie Van Landeghem
48886afc78 prevent zero-length mem alloc (#4429)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* goldparse init: allocate fields only if doc is not empty

* avoid zero length alloc in saving tokenizer cache

* avoid allocating zero length mem in matcher

* asserts to avoid allocating zero length mem

* fix zero-length allocation in matcher

* bump cymem version

* revert cymem version bump
2019-10-22 16:54:33 +02:00
adrianeboyd
3dfc764577 Free pointers in parser activations (#4486)
* Free pointers in ActivationsC

* Restructure alloc/free for parser activations

* Rewrite/restructure to have allocation and free in parallel functions
in `_parser_model` rather than partially in `_parseC()` in `Parser`.

* Remove `resize_activations` from `_parser_model.pxd`.
2019-10-22 15:06:44 +02:00
tamuhey
fb89f6792b refactor: remove unused variable (#4499) 2019-10-22 14:38:17 +02:00
gustavengstrom
050e2445a8 Adding noun_chunks to the Swedish language model (sv) (#4422)
* Create syntax_iterators.py

Replica of spacy/lang/fr/syntax_iterators.py

* Added import statements for SYNTAX_ITERATORS

* Create gustavengstrom.md

* Added "dobj" to list of labels in noun_chunks method and a test_noun_chunks method to the  Swedish language model.

* Delete README-checkpoint.md


Co-authored-by: Gustav <gustav@davcon.se>
Co-authored-by: Ines Montani <ines@ines.io>
2019-10-21 12:57:06 +02:00
adrianeboyd
f5c551a43a Checks/errors related to ill-formed IOB input in CLI convert and debug-data (#4487)
* Error for ill-formed input to iob_to_biluo()

Check for empty label in iob_to_biluo(), which can result from
ill-formed input.

* Check for empty NER label in debug-data
2019-10-21 12:20:28 +02:00
Sofie Van Landeghem
d5d55312b2 prevent division by zero in most_similar method (#4488) 2019-10-21 12:04:46 +02:00
Pepe Berba
7772d5d3c5 Update vocab.get_vector docs to include features on Fasttext ngram (#4464)
* Update `vocab.get_vector`

* Added contrib agreement
2019-10-20 01:28:18 +02:00
Ines Montani
2c96a5e5b0
Remove lemma attrs on BaseDefaults (#4468) 2019-10-19 23:18:09 +02:00
adrianeboyd
8d3de90bc4 Suppress convert output if writing to stdout (#4472) 2019-10-18 18:12:59 +02:00
Ines Montani
692d7f4291 Fix formatting [ci skip] 2019-10-18 11:33:38 +02:00
Ines Montani
181c01f629 Tidy up and auto-format 2019-10-18 11:27:38 +02:00
Ines Montani
fb11852750 Remove unused imports 2019-10-18 11:06:41 +02:00
adrianeboyd
d359da9687 Replace Entity/MatchStruct with SpanC (#4459)
* Replace MatchStruct with Entity

Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.

* Replace Entity with more general SpanC
2019-10-18 11:01:47 +02:00
adrianeboyd
29e3da6493 Add missing cats to gold annot_tuples in Scorer (#4466)
Add missing `cats` in `Scorer` call to `GoldParse.from_annot_tuples()`
when the `doc` and `gold` have differing lengths.
2019-10-18 11:00:02 +02:00
adrianeboyd
135e3de531 Check for docs with 2+ sentences in debug-data (#4467) 2019-10-18 10:59:16 +02:00
Daniel King
e646956176 Most similar bug (#4446)
* Add batch size indexing

* Don't sort if n == 1

* Add test for most similar vectors issue

* Change > to >=
2019-10-16 23:18:55 +02:00
Anastassia
4a77d03ff7 Fix documentation for the docs_to_json function (#4456) 2019-10-16 23:17:58 +02:00
adrianeboyd
275c9ad872 Allow int values in token patterns (#4444)
* Add missing int value option to top-level pattern validation in Matcher

* Adjust existing tests accordingly

* Add new test for valid pattern `{"LENGTH": int}`
2019-10-16 13:40:18 +02:00
Sofie Van Landeghem
7d1efac4eb Fix remove pattern from matcher (#4454)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* bugfix in remove matcher + extended unit test
2019-10-16 13:34:58 +02:00
Sofie Van Landeghem
2d249a9502 KB extensions and better parsing of WikiData (#4375)
* fix overflow error on windows

* more documentation & logging fixes

* md fix

* 3 different limit parameters to play with execution time

* bug fixes directory locations

* small fixes

* exclude dev test articles from prior probabilities stats

* small fixes

* filtering wikidata entities, removing numeric and meta items

* adding aliases from wikidata also to the KB

* fix adding WD aliases

* adding also new aliases to previously added entities

* fixing comma's

* small doc fixes

* adding subclassof filtering

* append alias functionality in KB

* prevent appending the same entity-alias pair

* fix for appending WD aliases

* remove date filter

* remove unnecessary import

* small corrections and reformatting

* remove WD aliases for now (too slow)

* removing numeric entities from training and evaluation

* small fixes

* shortcut during prediction if there is only one candidate

* add counts and fscore logging, remove FP NER from evaluation

* fix entity_linker.predict to take docs instead of single sentences

* remove enumeration sentences from the WP dataset

* entity_linker.update to process full doc instead of single sentence

* spelling corrections and dump locations in readme

* NLP IO fix

* reading KB is unnecessary at the end of the pipeline

* small logging fix

* remove empty files
2019-10-14 12:28:53 +02:00
Peter Gilles
428887b8f2 Initial commit: New language Luxembourgish (lb) (#4424)
* new language: Luxembourgish (lb)

* update

* update

* Update and rename .github/CONTRIBUTOR_AGREEMENT.md to .github/contributors/PeterGilles.md

* Update and rename .github/contributors/PeterGilles.md to .github/CONTRIBUTOR_AGREEMENT.md

* Update norm_exceptions.py

* Delete README.md

* moved test_lemma.py

* deactivated 'lemma_lookup = LOOKUP'

* update

* Update conftest.py

* update

* tests updated

* import unicode_literals

* Update spacy/tests/lang/lb/test_text.py

Co-Authored-By: Ines Montani <ines@ines.io>

* Create PeterGilles.md
2019-10-14 12:27:50 +02:00
adrianeboyd
98a961a60e Fix PhraseMatcher.remove for overlapping patterns (#4437) 2019-10-14 12:19:51 +02:00
Ines Montani
f8f68bb062 Auto-format [ci skip] 2019-10-10 17:08:39 +02:00
adrianeboyd
6f54e59fe7 Fix util.filter_spans() to prefer first span in overlapping sam… (#4414)
* Update util.filter_spans() to prefer earlier spans

* Add filter_spans test for first same-length span

* Update entity relation example to refer to util.filter_spans()
2019-10-10 17:00:03 +02:00
Sofie Van Landeghem
da6e0de34f fix attrs field in the matcher (#4423)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* ensure attrs is NULL when nr_attr == 0 + several fixes to prevent OOB
2019-10-10 15:20:59 +02:00
Sofie Van Landeghem
5efae495f1 Error when removing a matcher rule that doesn't exist (#4420)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing
2019-10-10 14:01:53 +02:00
Matthew Honnibal
fa95c030a5
Unify matcher get_ent_id and get_pattern_key (#4415)
This is basically stabbing blindly at the ghost match problem, but it at
least seems like there was a bug previously here --- so this should
hopefully be an improvement, even if it doesn't fix the ghost match
problem.
2019-10-09 15:26:31 +02:00
Ines Montani
c4f95c1569 Update formatting and docstrings [ci skip] 2019-10-08 12:25:23 +02:00
Matthew Honnibal
ddd6fda59c Add registry for model creation functions ('architectures') (#4395)
* Add architecture registry

* Add test for arch registry

* Add error for model architectures
2019-10-08 12:21:03 +02:00
tamuhey
650cbfe82d multiprocessing pipe (#1303) (#4371)
* refactor: separate formatting docs and golds in Language.update

* fix return typo

* add pipe test

* unpickleable object cannot be assigned to p.map

* passed test pipe

* passed test!

* pipe terminate

* try pipe

* passed test

* fix ch

* add comments

* fix len(texts)

* add comment

* add comment

* fix: multiprocessing of pipe is not supported in 2

* test: use assert_docs_equal

* fix: is_python3 -> is_python2

* fix: change _pipe arg to use functools.partial

* test: add vector modification test

* test: add sample ner_pipe and user_data pipe

* add warnings test

* test: fix user warnings

* test: fix warnings capture

* fix: remove islice import

* test: remove warnings test

* test: add stream test

* test: rename

* fix: multiproc stream

* fix: stream pipe

* add comment

* mp.Pipe seems to be able to use with relative small data

* test: skip stream test in python2

* sort imports

* test: add reason to skiptest

* fix: use pipe for docs communucation

* add comments

* add comment
2019-10-08 12:20:55 +02:00
adrianeboyd
14841d0aa6 Fix PhraseMatcher callback and add tests (#4399)
* Fix callback lookup in PhraseMatcher (string key rather than hash key)
* Add callback tests for Matcher and PhraseMatcher
2019-10-08 12:07:02 +02:00
Matthew Honnibal
fd4a5341b0 Fix ner_jsonl2json converter (fix #4389) (#4394) 2019-10-08 00:52:45 +02:00
Matthew Honnibal
29f9fec267
Improve spacy pretrain (#4393)
* Support bilstm_depth arg in spacy pretrain

* Add option to ignore zero vectors in get_cossim_loss

* Use cosine loss in Cloze multitask
2019-10-07 23:34:58 +02:00
Ines Montani
9cd6ca3e4d Improve usage of pkg_resources and handling of entry points (#4387)
* Only import pkg_resources where it's needed

Apparently it's really slow

* Use importlib_metadata for entry points

* Revert "Only import pkg_resources where it's needed"

This reverts commit 5ed8c03afa.

* Revert "Revert "Only import pkg_resources where it's needed""

This reverts commit 8b30b57957.

* Revert "Use importlib_metadata for entry points"

This reverts commit 9f071f5c40.

* Revert "Revert "Use importlib_metadata for entry points""

This reverts commit 02e12a17ec.

* Skip test that weirdly hangs

* Fix hanging test by using global
2019-10-07 17:22:09 +02:00
adrianeboyd
d53a8d9313 Consider batch_size when sorting similar vectors (#4388) 2019-10-07 13:38:35 +02:00
adrianeboyd
a3509f67d4 Extend unicode character block for Sinhala (#4378)
* Extend unicode character block for Sinhala

* Add sentencizer tests for more languages
2019-10-07 13:17:03 +02:00
Ines Montani
573e543e4a Alphanumeric -> alphabetic [ci skip]
see ines/spacy-course#38
2019-10-06 13:30:01 +02:00
adrianeboyd
cbc2cee2c8 Improve URL_PATTERN and handling in tokenizer (#4374)
* Move prefix and suffix detection for URL_PATTERN

Move prefix and suffix detection for `URL_PATTERN` into the tokenizer.
Remove associated lookahead and lookbehind from `URL_PATTERN`.

Fix tokenization for Hungarian given new modified handling of prefixes
and suffixes.

* Match a wider range of URI schemes
2019-10-05 13:00:09 +02:00
Ines Montani
fec9433044 Make PhraseMatcher.vocab consistent with Matcher.vocab (closes #4373) 2019-10-04 12:18:41 +02:00
Matthew Honnibal
37ef874d8b Set version to v2.2.1 2019-10-03 14:50:39 +02:00
Sofie Van Landeghem
4e7259c6cf Bugfix initializing DocBin with attributes (#4368)
* docbin init fix + documentation fix + unit tests

* newline

* try with zlib instead of gzip (python 2 incompatibilities)
2019-10-03 14:48:45 +02:00
Ben Taylor
1db79a33cb most_similar() return the k most similar vectors (#4364)
* most_similar return n-most similar vectors

* updated most_similar comment

* add bintay contributor agreement

* sign bintay contributor agreement

* fix most_similar documentation typo

* fixed error in prune_vectors

* updated prune_vectors test
2019-10-03 14:09:44 +02:00
Matthew Honnibal
2eb31012e7 Set version to v2.2.0 2019-10-02 14:40:06 +02:00
Matthew Honnibal
796072e560 Set version to v2.2.0.dev19 2019-10-02 12:51:29 +02:00
Sofie Van Landeghem
9d3ce7cba2 Ensure training doesn't crash with empty batches (#4360)
* unit test for previously resolved unflatten issue

* prevent batch of empty docs to cause problems
2019-10-02 12:50:47 +02:00
adrianeboyd
dda86118bd Update Ukrainian lemmatizer with new lookups (#4359)
* Update Ukrainian lemmatizer with new lookups

* Add missing import


Co-authored-by: Ines Montani <ines@ines.io>
2019-10-02 12:04:06 +02:00
Ines Montani
b6670bf0c2 Use consistent spelling 2019-10-02 10:37:39 +02:00
Matthew Honnibal
38b6e69389 Merge branch 'master' of https://github.com/explosion/spaCy 2019-10-01 22:28:25 +02:00
Matthew Honnibal
d4b63bb6dd Set version to v2.2.0 2019-10-01 22:28:13 +02:00
Ines Montani
475e3188ce Add docs on filtering overlapping spans for merging (resolves #4352) [ci skip] 2019-10-01 21:59:50 +02:00
Matthew Honnibal
64a9577d43 Set version to v2.2.0.dev17 2019-10-01 21:36:59 +02:00
Ines Montani
cf65a80f36 Refactor lemmatizer and data table integration (#4353)
* Move test

* Allow default in Lookups.get_table

* Start with blank tables in Lookups.from_bytes

* Refactor lemmatizer to hold instance of Lookups

* Get lookups table within the lemmatization methods to make sure it references the correct table (even if the table was replaced or modified, e.g. when loading a model from disk)
* Deprecate other arguments on Lemmatizer.__init__ and expect Lookups for consistency
* Remove old and unsupported Lemmatizer.load classmethod
* Refactor language-specific lemmatizers to inherit as much as possible from base class and override only what they need

* Update tests and docs

* Fix more tests

* Fix lemmatizer

* Upgrade pytest to try and fix weird CI errors

* Try pytest 4.6.5
2019-10-01 21:36:03 +02:00
Ines Montani
3297a19545 Warn in Tagger.begin_training if no lemma tables are available (#4351) 2019-10-01 15:13:55 +02:00
Matthew Honnibal
2fb05482dd Set version to v2.2.0 2019-10-01 03:50:13 +02:00
Matthew Honnibal
dc22ec0aad Set version to v2.2.0.dev17 2019-10-01 03:26:53 +02:00
Matthew Honnibal
aedfba867a Set version to v2.2.0.dev16 2019-10-01 00:31:00 +02:00
Ines Montani
e0cf4796a5 Move lookup tables out of the core library (#4346)
* Add default to util.get_entry_point

* Tidy up entry points

* Read lookups from entry points

* Remove lookup tables and related tests

* Add lookups install option

* Remove lemmatizer tests

* Remove logic to process language data files

* Update setup.cfg
2019-10-01 00:01:27 +02:00
Rahul Soni
ed620daa5c Fix example sentences in Hindi for grammatical errors (#4343)
* Fix grammar for hindi

* Fix grammar for hindi

* Submit contributor agreement
2019-09-30 23:32:49 +02:00
Ines Montani
ba186299e1 Tidy up and modernize setup and config (#4344)
* Tidy up and modernize setup and config

* Update setup.cfg

* Re-add pyproject.toml

* Delete .flake8

* Move static meta from about to setup.cfg

* Update setup.cfg

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
2019-09-30 20:10:55 +02:00
Ines Montani
4f905ac9e6 Add test for ASCII filenames (#4345) 2019-09-30 18:45:30 +02:00
Matthew Honnibal
b5c775dd42 Set version to v2.2.0 2019-09-30 12:47:08 +02:00
Ines Montani
f7d1736241 Skip duplicate spans in Doc.retokenize (#4339) 2019-09-30 12:43:48 +02:00
Ines Montani
0226b3bf0e Fix test imports 2019-09-29 17:34:56 +02:00
Ines Montani
3d8fd4b461 Revert #4334 2019-09-29 17:32:12 +02:00
adrianeboyd
ba5595c764 Fix PhraseMatcher to remember attr on pickling (#4336)
* Fix PhraseMatcher to remember attr on pickling

* Check for attr as int or long
2019-09-29 17:12:33 +02:00
Ines Montani
75514b5970 Fix Korean 2019-09-29 17:10:56 +02:00
Ines Montani
499c39acba Remove unnecessary namedtuple/dataclass 2019-09-29 15:05:28 +02:00
Matthew Honnibal
eba708404d Set version to v2.2.0.dev15 2019-09-28 22:23:53 +02:00
Matthew Honnibal
6189959adb Set version to v2.2.0.dev14 2019-09-28 22:09:46 +02:00
Matthew Honnibal
0df2a599b7 Set version to v2.2.0.dev13 2019-09-28 21:26:05 +02:00
Ines Montani
c9cd516d96 Move tests out of package (#4334)
* Move tests out of package

* Fix typo
2019-09-28 18:05:00 +02:00
Matthew Honnibal
d05eb56ce2 Set version to v2.2.0.dev12 2019-09-28 16:35:56 +02:00
Ines Montani
5fe61539c4 Fix unicode "e" in filename 2019-09-28 15:45:16 +02:00
Ines Montani
811c4c97c9 Correct lookup lemma of "lenses" (see #4332) 2019-09-28 14:04:07 +02:00
Ines Montani
f8d1e2f214 Update CLI docs [ci skip] 2019-09-28 13:12:30 +02:00
Sofie Van Landeghem
22b9e12159 Ensure the NER remains consistent after resizing (#4330)
* test and fix for second bug of issue 4042

* fix for first bug in 4042

* crashing test for Issue 4313

* forgot one instance of resize

* remove prints

* undo uncomment

* delete test for 4313 (uses third party lib)

* add fix for Issue 4313

* unit test for 4313
2019-09-27 20:57:13 +02:00
adrianeboyd
3906785b49 Initialize low data warning for debug-data parser (#4331) 2019-09-27 20:56:49 +02:00
Ines Montani
206e8a5ac7 Also apply hotfix to Ukrainian lemmaitzer 2019-09-27 18:03:26 +02:00
Ines Montani
acd5bcb0b3 Tidy up fixtures 2019-09-27 17:57:59 +02:00
Ines Montani
b21b2e27e5 Hotfix Russian lemmatizer 2019-09-27 17:56:12 +02:00
Matthew Honnibal
a4d4c4bfa4 Set version to v2.2.0.dev11 2019-09-27 16:40:26 +02:00
Ines Montani
aad66d9bb9 Document PhraseMatcher.remove [ci skip] 2019-09-27 16:34:53 +02:00
adrianeboyd
c23edf302b Replace PhraseMatcher with trie-based search (#4309)
* Replace PhraseMatcher with Aho-Corasick

Replace PhraseMatcher with the Aho-Corasick algorithm over numpy arrays
of the hash values for the relevant attribute. The implementation is
based on FlashText.

The speed should be similar to the previous PhraseMatcher. It is now
possible to easily remove match IDs and matches don't go missing with
large keyword lists / vocabularies.

Fixes #4308.

* Restore support for pickling

* Fix internal keyword add/remove for numpy arrays

* Add missing loop for match ID set in search loop

* Remove cruft in matching loop for partial matches

There was a bit of unnecessary code left over from FlashText in the
matching loop to handle partial token matches, which we don't have with
PhraseMatcher.

* Replace dict trie with MapStruct trie

* Fix how match ID hash is stored/added

* Update fix for match ID vocab

* Switch from map_get_unless_missing to map_get

* Switch from numpy array to Token.get_struct_attr

Access token attributes directly in Doc instead of making a copy of the
relevant values in a numpy array.

Add unsatisfactory warning for hash collision with reserved terminal
hash key. (Ideally it would change the reserved terminal hash and redo
the whole trie, but for now, I'm hoping there won't be collisions.)

* Restructure imports to export find_matches

* Implement full remove()

Remove unnecessary trie paths and free unused maps.

Parallel to Matcher, raise KeyError when attempting to remove a match ID
that has not been added.

* Store docs internally only as attr lists

* Reduces size for pickle

* Remove duplicate keywords store

Now that docs are stored as lists of attr hashes, there's no need to
have the duplicate _keywords store.
2019-09-27 16:22:34 +02:00
tamuhey
b408b5b29e Refactor language update (#4316)
* refactor: separate formatting docs and golds in Language.update

* fix return typo
2019-09-27 16:20:21 +02:00
Jaydeep Borkar
6a06a3fa6a Update stop_words.py and add name in contributors (#4325)
* Update stop_words.py and add name in contributors

* add jaydeepborkar.md in contributors directory

* Reset template [ci skip]


Co-authored-by: Ines Montani <ines@ines.io>
2019-09-27 11:57:27 +02:00
Ines Montani
da9a869d3f Update vectors name docs [ci skip] 2019-09-26 16:21:32 +02:00
Matthew Honnibal
58533f01bf Set version to v2.2.0.dev10 2019-09-26 03:03:50 +02:00
Matthew Honnibal
27ace84f4a Support model name in init-model 2019-09-26 03:01:32 +02:00
Matthew Honnibal
eced2f3211 Set version to v2.2.0.dev9 2019-09-25 21:14:07 +02:00
Matthew Honnibal
1251b57dbb Fix vectors name arg to init-model 2019-09-25 14:21:27 +02:00
Matthew Honnibal
92ed4dc5e0
Allow vectors name to be set in init-model (#4321)
* Allow vectors name to be specified in init-model

* Document --vectors-name argument to init-model

* Update website/docs/api/cli.md

Co-Authored-By: Ines Montani <ines@ines.io>
2019-09-25 13:11:00 +02:00
Ines Montani
52904b7270 Raise if on_match is not callable or None 2019-09-24 23:06:24 +02:00
Ines Montani
16aa092fb5 Improve Morphology errors (#4314)
* Improve Morphology errors

* Also clean up some other errors

* Update errors.py
2019-09-21 14:37:06 +02:00
Ines Montani
9bf69bfbb2 Remove test 2019-09-19 17:38:41 +02:00
Ines Montani
8cd3763678 Update about.py [ci skip] 2019-09-19 01:02:25 +02:00
Matthew Honnibal
f52b857953 Update version 2019-09-19 00:56:35 +02:00
Matthew Honnibal
e34b4a38b0 Fix set labels meta 2019-09-19 00:56:07 +02:00
Matthew Honnibal
9d399fe63a Merge branch 'develop' of https://github.com/explosion/spaCy into develop 2019-09-19 00:04:06 +02:00
Matthew Honnibal
7d510c833e Fix orth replacement 2019-09-19 00:03:24 +02:00
Ines Montani
89d1dc4afa Merge branch 'master' into develop 2019-09-18 22:12:24 +02:00
Sean Löfgren
31c683d87d add return_matches and as_tuples back to Matcher.pipe (#4303)
* add contributor agreement [ci skip]

* add return_matches and as_tuples back to Matcher.pipe
2019-09-18 22:00:33 +02:00
Matthew Honnibal
42df49133d Also lower-case in orth variants 2019-09-18 21:54:51 +02:00
Matthew Honnibal
19d99fc9e7 Set version to v2.2.0.dev7 2019-09-18 21:43:59 +02:00
Matthew Honnibal
46c02d25b1 Merge changes to test_ner 2019-09-18 21:41:24 +02:00
Sofie Van Landeghem
de5a9ecdf3 Distinction between outside, missing and blocked NER annotations (#4307)
* remove duplicate unit test

* unit test (currently failing) for issue 4267

* bugfix: ensure doc.ents preserves kb_id annotations

* fix in setting doc.ents with empty label

* rename

* test for presetting an entity to a certain type

* allow overwriting Outside + blocking presets

* fix actions when previous label needs to be kept

* fix default ent_iob in set entities

* cleaner solution with U- action

* remove debugging print statements

* unit tests with explicit transitions and is_valid testing

* remove U- from move_names explicitly

* remove unit tests with pre-trained models that don't work

* remove (working) unit tests with pre-trained models

* clean up unit tests

* move unit tests

* small fixes

* remove two TODO's from doc.ents comments
2019-09-18 21:37:17 +02:00
Moshe Hazoom
72463b062f Improve speed of _merge method (#4300)
* make merge more efficient

* fix offsets

* merge works with relative indices

* remove printing

* Add the SCA

* fix SCA date

* more cythonize _retokenize.pyx

* more cythonize _retokenize.pyx

* fix only declaration in _retokenize.pyx

* switch back to absolute head

* switch back to absolute head

* fix comment

* merge from origin repo
2019-09-18 21:34:34 +02:00
tamuhey
875f3e5d8c remove redundant __call__ method in pipes.TextCategorizer (#4305)
* remove redundant __call__ method in pipes.TextCategorizer

Because the parent __call__ method behaves in the same way.

* fix: Pipe.__call__ arg

* fix: invalid arg in Pipe.__call__

* modified:   spacy/tests/regression/test_issue4278.py (#4278)

* deleted:    Pipfile
2019-09-18 21:31:27 +02:00
Ines Montani
00a8cbc306 Tidy up and auto-format 2019-09-18 20:27:03 +02:00
Ines Montani
f2c8b1e362 Simplify lookup hashing
Just use get_string_id, which already does everything ensure_hash was supposed to do
2019-09-18 20:24:41 +02:00
Ines Montani
dd1810f05a Update DocBin and add docs 2019-09-18 20:23:21 +02:00
Ines Montani
7e810cced6 Add references to docs pages 2019-09-18 19:57:21 +02:00
Ines Montani
2e5ab5b59c Make except more explicit 2019-09-18 19:57:08 +02:00
Ines Montani
1f648ecb76 Auto-format 2019-09-18 19:56:55 +02:00
Ines Montani
0f7fe5e7a7 Auto-format and fix typo and consistency 2019-09-18 19:18:30 +02:00
Matthew Honnibal
e53b86751f DocPallet -> DocBin 2019-09-18 15:15:37 +02:00
Matthew Honnibal
fa9a283128 Fix name 2019-09-18 13:40:03 +02:00
Matthew Honnibal
88a23cf49a Fix name 2019-09-18 13:38:29 +02:00
Matthew Honnibal
3507943b15 Add docstring for DocPallet 2019-09-18 13:25:47 +02:00
Matthew Honnibal
1c8de6b2e5 Rename DocBox->DocPallet 2019-09-18 13:13:51 +02:00
Ines Montani
691e0088cf Remove duplicate tok2vec property (closes #4302) 2019-09-17 11:22:03 +02:00
Ines Montani
a84025d70b Remove --no-deps from default pip args on download
Add warning if user is executing spaCy without having it installed and add --no-deps to prevent the package from being redownloaded
2019-09-16 23:32:41 +02:00
Matthew Honnibal
84c65f9455 Merge branch 'master' into develop 2019-09-16 22:12:20 +02:00
Matthew Honnibal
47055d5988 Fix type declarations in _merge method 2019-09-16 22:10:13 +02:00
Sofie Van Landeghem
03ac29f437 Ensure that doc.ents preserves kb_id annotations (#4294)
* bugfix: ensure doc.ents preserves kb_id annotations

* fix backward compatibility

* additional test
2019-09-16 15:18:37 +02:00
Ines Montani
139428c20f Set unique vector names in tests 2019-09-16 15:16:54 +02:00
Ines Montani
bf06d9d537 Allow passing vectors_name to Vocab 2019-09-16 15:16:41 +02:00
Ines Montani
cb6c68a573 Pass vectors name correctly in prune_vectors 2019-09-16 15:16:29 +02:00
Ines Montani
3ba5238282 Make "unnamed vectors" warning a real warning 2019-09-16 15:16:12 +02:00
adrianeboyd
b5d999e510 Add textcat to train CLI (#4226)
* Add doc.cats to spacy.gold at the paragraph level

Support `doc.cats` as `"cats": [{"label": string, "value": number}]` in
the spacy JSON training format at the paragraph level.

* `spacy.gold.docs_to_json()` writes `docs.cats`

* `GoldCorpus` reads in cats in each `GoldParse`

* Update instances of gold_tuples to handle cats

Update iteration over gold_tuples / gold_parses to handle addition of
cats at the paragraph level.

* Add textcat to train CLI

* Add textcat options to train CLI
* Add textcat labels in `TextCategorizer.begin_training()`
* Add textcat evaluation to `Scorer`:
  * For binary exclusive classes with provided label: F1 for label
  * For 2+ exclusive classes: F1 macro average
  * For multilabel (not exclusive): ROC AUC macro average (currently
relying on sklearn)
* Provide user info on textcat evaluation settings, potential
incompatibilities
* Provide pipeline to Scorer in `Language.evaluate` for textcat config
* Customize train CLI output to include only metrics relevant to current
pipeline
* Add textcat evaluation to evaluate CLI

* Fix handling of unset arguments and config params

Fix handling of unset arguments and model confiug parameters in Scorer
initialization.

* Temporarily add sklearn requirement

* Remove sklearn version number

* Improve Scorer handling of models without textcats

* Fixing Scorer handling of models without textcats

* Update Scorer output for python 2.7

* Modify inf in Scorer for python 2.7

* Auto-format

Also make small adjustments to make auto-formatting with black easier and produce nicer results

* Move error message to Errors

* Update documentation

* Add cats to annotation JSON format [ci skip]

* Fix tpl flag and docs [ci skip]

* Switch to internal roc_auc_score

Switch to internal `roc_auc_score()` adapted from scikit-learn.

* Add AUCROCScore tests and improve errors/warnings

* Add tests for AUCROCScore and roc_auc_score
* Add missing error for only positive/negative values
* Remove unnecessary warnings and errors

* Make reduced roc_auc_score functions private

Because most of the checks and warnings have been stripped for the
internal functions and access is only intended through `ROCAUCScore`,
make the functions for roc_auc_score adapted from scikit-learn private.

* Check that data corresponds with multilabel flag

Check that the training instances correspond with the multilabel flag,
adding the multilabel flag if required.

* Add textcat score to early stopping check

* Add more checks to debug-data for textcat

* Add example training data for textcat

* Add more checks to textcat train CLI

* Check configuration when extending base model
* Fix typos

* Update textcat example data

* Provide licensing details and licenses for data
* Remove two labels with no positive instances from jigsaw-toxic-comment
data.


Co-authored-by: Ines Montani <ines@ines.io>
2019-09-15 22:31:31 +02:00
Ines Montani
bab9976d9a
💫 Adjust Table API and add docs (#4289)
* Adjust Table API and add docs

* Add attributes and update description [ci skip]

* Use strings.get_string_id instead of hash_string

* Fix table method calls

* Make orth arg in Lemmatizer.lookup optional

Fall back to string, which is now handled by Table.__contains__ out-of-the-box

* Fix method name

* Auto-format
2019-09-15 22:08:13 +02:00
Ines Montani
88a9d87f6f Fix test 2019-09-15 18:04:44 +02:00
Ines Montani
23e28e2844 Merge branch 'master' into develop 2019-09-15 17:57:09 +02:00
Ines Montani
c7e4ea7154 Update examples and languages.json [ci skip] 2019-09-15 17:56:40 +02:00
Ines Montani
aa3c59a2f3 Include Norwegian NER entity types in glossary [ci skip]
See https://github.com/ltgoslo/norne
2019-09-15 17:16:21 +02:00
Ines Montani
7194845234 Skip tests properly instead of xfailing them 2019-09-15 17:00:17 +02:00
Ines Montani
16c2522791 Merge branch 'master' into develop 2019-09-14 16:42:01 +02:00
adrianeboyd
6942a6a69b Extend default punct for sentencizer (#4290)
Most of these characters are for languages / writing systems that aren't
supported by spacy, but I don't think it causes problems to include
them. In the UD evals, Hindi and Urdu improve a lot as expected (from
0-10% to 70-80%) and Persian improves a little (90% to 96%). Tamil
improves in combination with #4288.

The punctuation list is converted to a set internally because of its
increased length.

Sentence final punctuation generated with:

```
unichars -gas '[\p{Sentence_Break=STerm}\p{Sentence_Break=ATerm}]' '\p{Terminal_Punctuation}'
```

See: https://stackoverflow.com/a/9508766/461847

Fixes #4269.
2019-09-14 15:25:48 +02:00
adrianeboyd
bee7961927 Add Kannada, Tamil, and Telugu unicode blocks (#4288)
Add Kannada, Tamil, and Telugu unicode blocks to uncased character
classes so that period is recognized as a suffix during tokenization.

(I'm sure a few symbols in the code blocks should not be ALPHA, but this
is mainly relevant for suffix detection and seems to be an improvement
in practice.)
2019-09-14 14:23:06 +02:00
Ines Montani
3126dd0904 Tidy up and auto-format [ci skip] 2019-09-14 12:58:06 +02:00
Ines Montani
27106d6528 Merge branch 'master' into develop 2019-09-13 17:07:17 +02:00
Sofie Van Landeghem
2ae5db580e dim bugfix when incl_prior is False (#4285) 2019-09-13 16:30:05 +02:00
Paul O'Leary McCann
29a9e636eb Fix half-width space handling in JA (#4284) (closes #4262)
Before this patch, half-width spaces between words were simply lost in
Japanese text. This wasn't immediately noticeable because much Japanese
text never uses spaces at all.
2019-09-13 16:28:12 +02:00
Ines Montani
3c3658ef9f Merge branch 'master' into develop 2019-09-12 18:03:01 +02:00
Ines Montani
228bbf506d Improve label properties on pipes 2019-09-12 18:02:44 +02:00
Paul O'Leary McCann
7d8df69158 Bloom-filter backed Lookup Tables (#4268)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance

* Update docstrings

* Update docstrings and errors

* Update test

* Add Lookups.__len__

* Add serialization methods

* Add Lookups.remove_table

* Use msgpack for serialization to disk

* Fix file exists check

* Try using OrderedDict for everything

* Update .flake8 [ci skip]

* Try fixing serialization

* Update test_lookups.py

* Update test_serialize_vocab_strings.py

* Lookups / Tables now work

This implements the stubs in the Lookups/Table classes. Currently this
is in Cython but with no type declarations, so that could be improved.

* Add lookups to setup.py

* Actually add lookups pyx

The previous commit added the old py file...

* Lookups work-in-progress

* Move from pyx back to py

* Add string based lookups, fix serialization

* Update tests, language/lemmatizer to work with string lookups

There are some outstanding issues here:

- a pickling-related test fails due to the bloom filter
- some custom lemmatizers (fr/nl at least) have issues

More generally, there's a question of how to deal with the case where
you have a string but want to use the lookup table. Currently the table
allows access by string or id, but that's getting pretty awkward.

* Change lemmatizer lookup method to pass (orth, string)

* Fix token lookup

* Fix French lookup

* Fix lt lemmatizer test

* Fix Dutch lemmatizer

* Fix lemmatizer lookup test

This was using a normal dict instead of a Table, so checks for the
string instead of an integer key failed.

* Make uk/nl/ru lemmatizer lookup methods consistent

The mentioned tokenizers all have their own implementation of the
`lookup` method, which accesses a `Lookups` table. The way that was
called in `token.pyx` was changed so this should be updated to have the
same arguments as `lookup` in `lemmatizer.py` (specificially (orth/id,
string)).

Prior to this change tests weren't failing, but there would probably be
issues with normal use of a model. More tests should proably be added.

Additionally, the language-specific `lookup` implementations seem like
they might not be needed, since they handle things like lower-casing
that aren't actually language specific.

* Make recently added Greek method compatible

* Remove redundant class/method

Leftovers from a merge not cleaned up adequately.
2019-09-12 17:26:11 +02:00
Sofie Van Landeghem
9be4d1c105 Allow copying of user_data in as_doc (#4282)
* Allow copying the user_data with as_doc + unit test

* add option to docs

* add typing

* import fix

* workaround to avoid bool clashing ...

* bint instead of bool
2019-09-12 17:08:14 +02:00
Matthew Honnibal
7d782aa97b Add more docstrings for MorphAnalysis 2019-09-12 16:48:30 +02:00
Ines Montani
b544dcb3c5 Document debug-data [ci skip] 2019-09-12 15:26:20 +02:00
Ines Montani
05a2df6616 Remove not implemented file validation [ci skip] 2019-09-12 15:26:02 +02:00
Ines Montani
10257f3131 Document Lookups [ci skip] 2019-09-12 14:00:14 +02:00
Ines Montani
32404e613c Create directory if it doesn't exist 2019-09-12 14:00:01 +02:00
Ines Montani
625ce2db8e Update Language docs [ci skip] 2019-09-12 13:03:38 +02:00
Ines Montani
655b434553 Merge branch 'master' into develop 2019-09-12 11:39:18 +02:00
Sofie Van Landeghem
0b4b4f1819 Documentation for Entity Linking (#4065)
* document token ent_kb_id

* document span kb_id

* update pipeline documentation

* prior and context weights as bool's instead

* entitylinker api documentation

* drop for both models

* finish entitylinker documentation

* small fixes

* documentation for KB

* candidate documentation

* links to api pages in code

* small fix

* frequency examples as counts for consistency

* consistent documentation about tensors returned by predict

* add entity linking to usage 101

* add entity linking infobox and KB section to 101

* entity-linking in linguistic features

* small typo corrections

* training example and docs for entity_linker

* predefined nlp and kb

* revert back to similarity encodings for simplicity (for now)

* set prior probabilities to 0 when excluded

* code clean up

* bugfix: deleting kb ID from tokens when entities were removed

* refactor train el example to use either model or vocab

* pretrain_kb example for example kb generation

* add to training docs for KB + EL example scripts

* small fixes

* error numbering

* ensure the language of vocab and nlp stay consistent across serialization

* equality with =

* avoid conflict in errors file

* add error 151

* final adjustements to the train scripts - consistency

* update of goldparse documentation

* small corrections

* push commit

* typo fix

* add candidate API to kb documentation

* update API sidebar with EntityLinker and KnowledgeBase

* remove EL from 101 docs

* remove entity linker from 101 pipelines / rephrase

* custom el model instead of existing model

* set version to 2.2 for EL functionality

* update documentation for 2 CLI scripts
2019-09-12 11:38:34 +02:00
Ines Montani
4d4b3b0783 Add "labels" to Language.meta 2019-09-12 11:34:25 +02:00
Ines Montani
ac0e27a825
💫 Add Language.pipe_labels (#4276)
* Add Language.pipe_labels

* Update spacy/language.py

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>
2019-09-12 10:56:28 +02:00
tamuhey
71909cdf22 Fix iss4278 (#4279)
* fix: len(tuple) == 2

* (#4278) add fail test

* add contributor's aggreement
2019-09-12 10:44:49 +02:00
Ines Montani
8ebc3711dc Fix bug in Parser.labels and add test (#4275) 2019-09-11 18:29:35 +02:00
Matthew Honnibal
7fbb559045 Set version to v2.2.0.dev6 2019-09-11 18:07:20 +02:00
Matthew Honnibal
f7a096b462 Update morphology 2019-09-11 18:06:43 +02:00
Matthew Honnibal
f8ce9dde0f Set version to v2.2.0.dev5 2019-09-11 17:41:21 +02:00
Matthew Honnibal
c47c0269b1 Update morphology features 2019-09-11 15:16:53 +02:00
Ines Montani
af25323653 Tidy up and auto-format 2019-09-11 14:00:36 +02:00
Matthew Honnibal
af93997993 Fix conllu converter 2019-09-11 13:28:07 +02:00
Matthew Honnibal
178d010b25 Set version to 2.2.0.dev4 2019-09-11 12:28:37 +02:00
Ines Montani
e82a8d0d7a Merge branch 'master' into develop 2019-09-11 11:52:38 +02:00
Ines Montani
8f9f48b04c Add GreekLemmatizer.lookup (resolves #4272) 2019-09-11 11:44:40 +02:00
Ines Montani
6279d74c65 Tidy up and auto-format 2019-09-11 11:38:22 +02:00
Matthew Honnibal
7b858ba606 Update from master 2019-09-10 20:14:08 +02:00
Ines Montani
669a7d37ce Exclude vocab when testing to_bytes 2019-09-10 19:45:16 +02:00
adrianeboyd
e367864e59 Update Ukrainian create_lemmatizer kwargs (#4266)
Allow Ukrainian create_lemmatizer to accept lookups kwarg.
2019-09-10 11:14:46 +02:00
adrianeboyd
c32126359a Allow period as suffix following punctuation (#4248)
Addresses rare cases (such as `_MATH_.`, see #1061) where the final
period was not recognized as a suffix following punctuation.
2019-09-09 19:19:22 +02:00
Ines Montani
3e8f136ba7 💫 WIP: Basic lookup class scaffolding and JSON for all lemmatizer data (#4178)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance

* Update docstrings

* Update docstrings and errors

* Update test

* Add Lookups.__len__

* Add serialization methods

* Add Lookups.remove_table

* Use msgpack for serialization to disk

* Fix file exists check

* Try using OrderedDict for everything

* Update .flake8 [ci skip]

* Try fixing serialization

* Update test_lookups.py

* Update test_serialize_vocab_strings.py

* Fix serialization for lookups

* Fix lookups

* Fix lookups

* Fix lookups

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Give up on serialization test

* Xfail more serialization tests for 3.5

* Fix lookups for 2.7
2019-09-09 19:17:55 +02:00
Sofie Van Landeghem
482c7cd1b9 pulling tqdm imports in functions to avoid bug (tmp fix) (#4263) 2019-09-09 16:32:11 +02:00
Mihai Gliga
25aecd504f adding Romanian tag_map (#4257)
* adding Romanian tag_map

* added SCA file

* forgotten import
2019-09-09 11:53:09 +02:00
Matthew Honnibal
1653b818c5 Update Lithuanian tag map 2019-09-08 20:57:58 +02:00
adrianeboyd
3780e2ff50 Flush tokenizer cache when necessary (#4258)
Flush tokenizer cache when affixes, token_match, or special cases are
modified.

Fixes #4238, same issue as in #1250.
2019-09-08 20:52:46 +02:00
Matthew Honnibal
da8830d909 Set version to v2.2.0.dev3 2019-09-08 18:22:03 +02:00
Matthew Honnibal
1a65c5b7af Update develop from master 2019-09-08 18:21:41 +02:00
Matthew Honnibal
aec6174ae6 Fix lemmatizer 2019-09-08 18:09:53 +02:00
Matthew Honnibal
fde4f8ac8e Create lookups if not passed in 2019-09-08 18:08:09 +02:00
Pavle Vidanović
d03401f532 Lemmatizer lookup dictionary for Serbian and basic tag set adde… (#4251)
* Serbian stopwords added. (cyrillic alphabet)

* spaCy Contribution agreement included.

* Test initialize updated

* Serbian language code update. --bugfix

* Tokenizer exceptions added. Init file updated.

* Norm exceptions and lexical attributes added.

* Examples added.

* Tests added.

* sr_lang examples update.

* Tokenizer exceptions updated. (Serbian)

* Lemmatizer created. Licence included.

* Test updated.

* Tag map basic added.

* tag_map.py file removed since it uses default spacy tags.
2019-09-08 14:19:15 +02:00
Ivan Šarić
b01025dd06 adds Croatian lemma_lookup.json, license file and corresponding tests (#4252) 2019-09-08 13:40:45 +02:00
adrianeboyd
aec755d3a3 Modify retokenizer to use span root attributes (#4219)
* Modify retokenizer to use span root attributes

* tag/pos/morph are set to root tag/pos/morph

* lemma and norm are reset and end up as orth (not ideal, but better
than orth of first token)

* Also handle individual merge case

* Add test

* Attempt to handle ent_iob and ent_type in merges

* Fix check for whether B-ENT should become I-ENT

* Move IOB consistency check to after attrs

Move all IOB consistency checks after attrs are set and simplify to
check entire document, modifying I to B at the beginning of the document
or if the entity type of the previous token isn't the same.

* Move IOB consistency check for single merge

Move IOB consistency check after the token array is compressed for the
single merge case.

* Update spacy/tokens/_retokenize.pyx

Co-Authored-By: Matthew Honnibal <honnibal+gh@gmail.com>

* Remove single vs. multiple merge distinction

Remove original single-instance `_merge()` and use `_bulk_merge()` (now
renamed `_merge()`) for all merges.

* Add out-of-bound check in previous entity check
2019-09-08 13:04:49 +02:00
Bae Yong-Ju
a55f5a744f Fix ValueError exception on empty Korean text. (#4245) 2019-09-06 10:29:40 +02:00
Adriane Boyd
0f28418446 Add regression test for #1061 back to test suite 2019-09-04 20:42:24 +02:00
Adriane Boyd
c39c13f26b Add guillemets/chevrons to German orth variants
Add guillemets/chevrons to German orth variants for both German/Austrian
and Swiss conventions.
2019-09-04 20:05:08 +02:00
Adriane Boyd
6b0fec76fd Fix handling of preset entities in NER
* Fix check of valid ent_type for B
* Add valid L as preset-I followed by not-I
2019-09-04 13:42:42 +02:00