Commit Graph

15861 Commits

Author SHA1 Message Date
Adriane Boyd
2f0bb77920
Accept Doc input in pipelines (#9069)
* Accept Doc input in pipelines

Allow `Doc` input to `Language.__call__` and `Language.pipe`, which
skips `Language.make_doc` and passes the doc directly to the pipeline.

* ensure_doc helper function

* avoid running multiple processes on GPU

* Update spacy/tests/test_language.py

Co-authored-by: svlandeg <svlandeg@github.com>
2021-09-22 09:41:05 +02:00
Daniël de Kok
17802836be
Allow overriding vars in the project assets subcommand (#9248)
This change makes the `project assets` subcommand accept variables to
override as well, making the interface more similar to `project run`.
2021-09-21 10:49:45 +02:00
Adriane Boyd
00bdb31150
Fix vector for 0-length span (#9244) 2021-09-20 20:22:49 +02:00
svlandeg
ec621e6853 Merge remote-tracking branch 'upstream/master' into spacy.io 2021-09-20 15:54:00 +02:00
svlandeg
e0e3e9653b Revert "raise E983 early on in docbin init"
This reverts commit f3f7afa21f.
2021-09-20 15:52:02 +02:00
svlandeg
f3f7afa21f raise E983 early on in docbin init 2021-09-20 15:49:31 +02:00
github-actions[bot]
015d439eb6
Auto-format code with black (#9234)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-09-20 08:49:19 +02:00
Edward
79c7c62970 Update Hammurabi example code to v3 (#9218)
* Update Hammurabi example code

* Fix typo
2021-09-16 13:35:00 +02:00
Edward
8bda39f088
Update Hammurabi example code to v3 (#9218)
* Update Hammurabi example code

* Fix typo
2021-09-16 13:32:44 +02:00
Paul O'Leary McCann
c4f0800fb8
Validate pos values when creating Doc (#9148)
* Validate pos values when creating Doc

* Add clear error when setting invalid pos

This also changes the error language slightly.

* Fix variable name

* Update spacy/tokens/doc.pyx

* Test that setting invalid pos raises an error

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-16 13:28:05 +02:00
Jozef Harag
865cfbc903
feat: add spacy.WandbLogger.v3 with optional run_name and entity parameters (#9202)
* feat: add `spacy.WandbLogger.v3` with optional `run_name` and `entity` parameters

* update versioning in docs

Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
2021-09-16 12:26:41 +02:00
Sofie Van Landeghem
00836c2d7d
Update spacy/displacy/templates.py 2021-09-16 09:23:21 +02:00
Sofie Van Landeghem
4bf2606adf
Update spacy/displacy/render.py
Co-authored-by: Renat Shigapov <57352291+shigapov@users.noreply.github.com>
2021-09-16 09:22:38 +02:00
Paul O'Leary McCann
fd99438fb2 Make docs consistent (fix #9126) 2021-09-16 15:56:19 +09:00
Paul O'Leary McCann
1d57d78758 Make docs consistent (fix #9126) 2021-09-16 15:54:12 +09:00
Paul O'Leary McCann
9ceb8f413c
StringStore/Vocab dev docs (#9142)
* First take at StringStore/Vocab docs

Things to check:

1. The mysterious vocab members
2. How to make table of contents? Is it autogenerated?
3. Anything I missed / needs more detail?

* Update docs

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Updates based on review feedback

* Minor fix

* Move example code down

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-16 12:50:22 +09:00
Ines Montani
20f63e7154
Only include runtime-relevant config in package CLI dependency detection (#9211) 2021-09-15 23:16:01 +02:00
Paul O'Leary McCann
cd75f96501
Remove two attributes marked for removal in 3.1 (#9150)
* Remove two attributes marked for removal in 3.1

* Add back unused ints with changed names

* Change data_dir to _unused_object

This is still kept in the type definition, but I removed it from the
serialization code.

* Put serialization code back for now

Not sure how this interacts with old serialized models yet.
2021-09-15 23:07:21 +02:00
Adriane Boyd
d74870d38c
Prepare for v3.1.3 (#9200)
* Update thinc and spacy-legacy requirements

* Set version to v3.1.3
2021-09-14 11:03:51 +02:00
Paul O'Leary McCann
0f01f46e02
Update Cython string types (#9143)
* Replace all basestring references with unicode

`basestring` was a compatability type introduced by Cython to make
dealing with utf-8 strings in Python2 easier. In Python3 it is
equivalent to the unicode (or str) type.

I replaced all references to basestring with unicode, since that was
used elsewhere, but we could also just replace them with str, which
shoudl also be equivalent.

All tests pass locally.

* Replace all references to unicode type with str

Since we only support python3 this is simpler.

* Remove all references to unicode type

This removes all references to the unicode type across the codebase and
replaces them with `str`, which makes it more drastic than the prior
commits. In order to make this work importing `unicode_literals` had to
be removed, and one explicit unicode literal also had to be removed (it
is unclear why this is necessary in Cython with language level 3, but
without doing it there were errors about implicit conversion).

When `unicode` is used as a type in comments it was also edited to be
`str`.

Additionally `coding: utf8` headers were removed from a few files.
2021-09-13 17:02:17 +02:00
j-frei
5d0cc0d2ab Correct parser.py use_upper param info (#9180) 2021-09-13 09:29:11 +02:00
Renat Shigapov
d5cc009faf
Merge branch 'explosion:master' into master 2021-09-13 08:43:48 +02:00
Renat Shigapov
e61d93f8c3
add NEL-visualisation to manual-usage 2021-09-13 08:38:58 +02:00
Renat Shigapov
f4b5c4209d
specify kb_id and kb_url for URL visualisation 2021-09-13 08:15:07 +02:00
Renat Shigapov
7562fb5354
add links to entities into the TPL_ENT-template 2021-09-13 08:06:54 +02:00
Paul O'Leary McCann
9c4e84d4a1 Minor typo fix in docs 2021-09-11 14:23:11 +09:00
Paul O'Leary McCann
f89e1c34c9
Minor typo fix in docs 2021-09-11 14:22:05 +09:00
Renat Shigapov
2e2d0e8701 added spaCyOpenTapioca (#9181)
* add spaCyOpenTapioca to universe

* add agreement

* fix misprint in tags
2021-09-11 13:25:25 +09:00
mylibrar
d621df6422 Update example code of forte (#9175)
Co-authored-by: Suqi Sun <suqi.sun@petuum.com>
2021-09-11 13:25:17 +09:00
Renat Shigapov
646f3a54db
added spaCyOpenTapioca (#9181)
* add spaCyOpenTapioca to universe

* add agreement

* fix misprint in tags
2021-09-11 13:16:51 +09:00
mylibrar
ee28aac68e
Update example code of forte (#9175)
Co-authored-by: Suqi Sun <suqi.sun@petuum.com>
2021-09-11 13:13:13 +09:00
j-frei
462b009648
Correct parser.py use_upper param info (#9180) 2021-09-10 16:19:58 +02:00
Renat Shigapov
c1927fe994
fix misprint in tags 2021-09-09 15:37:34 +02:00
Renat Shigapov
8940e0baca
add agreement 2021-09-09 15:33:29 +02:00
Renat Shigapov
ea58294076
add spaCyOpenTapioca to universe 2021-09-09 15:13:18 +02:00
Adriane Boyd
aba6ce3a43
Handle spacy-legacy in package CLI for dependencies (#9163)
* Handle spacy-legacy in package CLI for dependencies

* Implement legacy backoff in spacy registry.find

* Remove unused import

* Update and format test
2021-09-08 11:46:40 +02:00
Sofie Van Landeghem
632d8d4c35
bump thinc to 8.0.9 (#9133) 2021-09-03 13:34:42 +02:00
github-actions[bot]
584fae5807
Auto-format code with black (#9130)
Co-authored-by: explosion-bot <explosion-bot@users.noreply.github.com>
2021-09-03 10:47:03 +02:00
Kevin Humphreys
ca93504660
Pass alignments to Matcher callbacks (#9001)
* pass alignments to callbacks

* refactor for single callback loop

* Update spacy/matcher/matcher.pyx

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-02 12:58:05 +02:00
Sofie Van Landeghem
721f4554c8 matcher doc corrections (#9115)
* update error message to current UX

* clarify uppercase effect

* fix docstring
2021-09-02 09:29:44 +02:00
Sofie Van Landeghem
8895e3c9ad
matcher doc corrections (#9115)
* update error message to current UX

* clarify uppercase effect

* fix docstring
2021-09-02 09:26:33 +02:00
Robyn Speer
d60b748e3c
Fix surprises when asking for the root of a git repo (#9074)
* Fix surprises when asking for the root of a git repo

In the case of the first asset I wanted to get from git, the data I
wanted was the entire repository. I tried leaving "path" blank, which
gave a less-than-helpful error, and then I tried `path: "/"`, which
started copying my entire filesystem into the project. The path I should
have used was "".

I've made two changes to make this smoother for others:

- The 'path' within a git clone defaults to ""
- If the path points outside of the tmpdir that the git clone goes
into, we fail with an error

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* use a descriptive error instead of a default

plus some minor fixes from PR review

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

* check for None values in assets

Signed-off-by: Elia Robyn Speer <elia@explosion.ai>

Co-authored-by: Elia Robyn Speer <elia@explosion.ai>
2021-09-01 22:52:08 +02:00
Paul O'Leary McCann
752696f134 Document Assigned Attributes of Pipeline Components (#9041)
* Add textcat docs

* Add NER docs

* Add Entity Linker docs

* Add assigned fields docs for the tagger

This also adds a preamble, since there wasn't one.

* Add morphologizer docs

* Add dependency parser docs

* Update entityrecognizer docs

This is a little weird because `Doc.ents` is the only thing assigned to,
but it's actually a bidirectional property.

* Add token fields for entityrecognizer

* Fix section name

* Add entity ruler docs

* Add lemmatizer docs

* Add sentencizer/recognizer docs

* Update website/docs/api/entityrecognizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/tagger.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update type for Doc.ents

This was `Tuple[Span, ...]` everywhere but `Tuple[Span]` seems to be
correct.

* Run prettier

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Run prettier

* Add transformers section

This basically just moves and renames the "custom attributes" section
from the bottom of the page to be consistent with "assigned attributes"
on other pages.

I looked at moving the paragraph just above the section into the
section, but it includes the unrelated registry additions, so it seemed
better to leave it unchanged.

* Make table header consistent

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-01 12:10:52 +02:00
Paul O'Leary McCann
ba6a37d358
Document Assigned Attributes of Pipeline Components (#9041)
* Add textcat docs

* Add NER docs

* Add Entity Linker docs

* Add assigned fields docs for the tagger

This also adds a preamble, since there wasn't one.

* Add morphologizer docs

* Add dependency parser docs

* Update entityrecognizer docs

This is a little weird because `Doc.ents` is the only thing assigned to,
but it's actually a bidirectional property.

* Add token fields for entityrecognizer

* Fix section name

* Add entity ruler docs

* Add lemmatizer docs

* Add sentencizer/recognizer docs

* Update website/docs/api/entityrecognizer.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/tagger.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update website/docs/api/entityruler.md

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>

* Update type for Doc.ents

This was `Tuple[Span, ...]` everywhere but `Tuple[Span]` seems to be
correct.

* Run prettier

* Apply suggestions from code review

Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>

* Run prettier

* Add transformers section

This basically just moves and renames the "custom attributes" section
from the bottom of the page to be consistent with "assigned attributes"
on other pages.

I looked at moving the paragraph just above the section into the
section, but it includes the unrelated registry additions, so it seemed
better to leave it unchanged.

* Make table header consistent

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
2021-09-01 12:09:39 +02:00
Paul O'Leary McCann
f803a84571
Fix inference of epoch_resume (#9084)
* Fix inference of epoch_resume

When an epoch_resume value is not specified individually, it can often
be inferred from the filename. The value inference code was there but
the value wasn't passed back to the training loop.

This also adds a specific error in the case where no epoch_resume value
is provided and it can't be inferred from the filename.

* Add new error

* Always use the epoch resume value if specified

Before this the value in the filename was used if found
2021-09-01 14:17:42 +09:00
Sofie Van Landeghem
a17b06d18b
allow typer 0.4 (#9089) 2021-08-31 20:53:51 +10:00
svlandeg
3f16c45281 Merge branch 'spacy.io' of https://github.com/explosion/spaCy into spacy.io 2021-08-31 10:58:40 +02:00
Davide Fiocco
5c88998b9d Fix point typo on docbin docs (#9097) 2021-08-31 10:58:31 +02:00
Ines Montani
753149bc88 Update references to contributor agreement [ci skip] 2021-08-31 10:58:22 +02:00
Davide Fiocco
1dd69be1f1
Fix point typo on docbin docs (#9097) 2021-08-31 10:55:44 +02:00