Commit Graph

6522 Commits

Author SHA1 Message Date
Matthew Honnibal
d5509e0989 Support Mish activation (requires Thinc 7.3) (#4536)
* Add arch for MishWindowEncoder

* Support mish in tok2vec and conv window >=2

* Pass new tok2vec settings from parser

* Syntax error

* Fix tok2vec setting

* Fix registration of MishWindowEncoder

* Fix receptive field setting

* Fix mish arch

* Pass more options from parser

* Support more tok2vec options in pretrain

* Require thinc 7.3

* Add docs [ci skip]

* Require thinc 7.3.0.dev0 to run CI

* Run black

* Fix typo

* Update Thinc version


Co-authored-by: Ines Montani <ines@ines.io>
2019-10-28 15:16:33 +01:00
Ines Montani
96bb8f2187 Add regression test for #4528 [ci skip] 2019-10-28 14:36:03 +01:00
Ines Montani
c5e41247e8 Tidy up and auto-format 2019-10-28 12:43:55 +01:00
Ines Montani
92018b9cd4 Tidy up and auto-format 2019-10-28 12:36:23 +01:00
Matthew Honnibal
f0ec7bcb79
Flag to ignore examples with mismatched raw/gold text (#4534)
* Flag to ignore examples with mismatched raw/gold text

After #4525, we're seeing some alignment failures on our OntoNotes data. I think we actually have fixes for most of these cases.

In general it's better to fix the data, but it seems good to allow the GoldCorpus class to just skip cases where the raw text doesn't
match up to the gold words. I think previously we were silently ignoring these cases.

* Try to fix test on Python 2.7
2019-10-28 11:40:12 +01:00
Matthew Honnibal
795699015c
Clarify parser model CPU/GPU code (#4535)
The previous version worked with previous thinc, but only
because some thinc ops happened to have gpu/cpu compatible
implementations. It's better to call the right Ops instance.
2019-10-27 23:43:09 +01:00
Matthw Honnibal
46eecdcb70 Remove print 2019-10-27 22:24:19 +01:00
Matthw Honnibal
426b745640 Fix tests for gpu 2019-10-27 22:19:18 +01:00
Matthw Honnibal
165e378082 Fix tok2vec arch after refactor 2019-10-27 22:19:10 +01:00
Matthew Honnibal
f8d740bfb1
Fix --gold-preproc train cli command (#4392)
* Fix get labels for textcat

* Fix char_embed for gpu

* Revert "Fix char_embed for gpu"

This reverts commit 055b9a9e85.

* Fix passing of cats in gold.pyx

* Revert "Match pop with append for training format (#4516)"

This reverts commit 8e7414dace.

* Fix popping gold parses

* Fix handling of cats in gold tuples

* Fix name

* Fix ner_multitask_objective script

* Add test for 4402
2019-10-27 21:58:50 +01:00
Sofie Van Landeghem
8e7414dace Match pop with append for training format (#4516)
* trying to fix script - not succesful yet

* match pop() with extend() to avoid changing the data

* few more pop-extend fixes

* reinsert deleted print statement

* fix print statement

* add last tested version

* append instead of extend

* add in few comments

* quick fix for 4402 + unit test

* fixing number of docs (not counting cats)

* more fixes

* fix len

* print tmp file instead of using data from examples dir

* print tmp file instead of using data from examples dir (2)
2019-10-27 16:01:32 +01:00
tamuhey
fcd25db033 [#4529] fix: gold pyx (#4530)
* fix: gold pyx

* remove print

* skip test in python2

* Add unicode declarations and don't skip test on Python 2
2019-10-27 13:50:07 +01:00
Matthew Honnibal
bddfbc7e1b Restore missing normalization from gold align
PR #4526 missed extra lower-casing and spacing normalization.
2019-10-27 13:47:08 +01:00
tamuhey
554850206c [#4525] fix gold.align (#4526)
* fix: gold.align

* fix align

* remove old align
2019-10-27 13:38:04 +01:00
Ines Montani
a9c6104047 Component decorator and component analysis (#4517)
* Add work in progress

* Update analysis helpers and component decorator

* Fix porting of docstrings for Python 2

* Fix docstring stuff on Python 2

* Support meta factories when loading model

* Put auto pipeline analysis behind flag for now

* Analyse pipes on remove_pipe and replace_pipe

* Move analysis to root for now

Try to find a better place for it, but it needs to go for now to avoid circular imports

* Simplify decorator

Don't return a wrapped class and instead just write to the object

* Update existing components and factories

* Add condition in factory for classes vs. functions

* Add missing from_nlp classmethods

* Add "retokenizes" to printed overview

* Update assigns/requires declarations of builtins

* Only return data if no_print is enabled

* Use multiline table for overview

* Don't support Span

* Rewrite errors/warnings and move them to spacy.errors
2019-10-27 13:35:49 +01:00
Matthew Honnibal
406eb95a47
Refactor Tok2Vec to use architecture registry (#4518)
* Add refactored tok2vec, using register_architecture

* Refactor Tok2Vec

* Fix ml

* Fix new tok2vec

* Move make_layer to util

* Add wire

* Fix missing import
2019-10-25 22:28:20 +02:00
Sofie Van Landeghem
99e309bb19 fix nn parser sample construction (#4524) 2019-10-25 22:26:42 +02:00
Ines Montani
cfffdba7b1 Implement new API for {Phrase}Matcher.add (backwards-compatible) (#4522)
* Implement new API for {Phrase}Matcher.add (backwards-compatible)

* Update docs

* Also update DependencyMatcher.add

* Update internals

* Rewrite tests to use new API

* Add basic check for common mistake

Raise error with suggestion if user likely passed in a pattern instead of a list of patterns

* Fix typo [ci skip]
2019-10-25 22:21:08 +02:00
Ines Montani
d2da117114 Also support passing list to Language.disable_pipes (#4521)
* Also support passing list to Language.disable_pipes

* Adjust internals
2019-10-25 16:19:08 +02:00
Ines Montani
e91366a216 Adjust formatting [ci skip] 2019-10-25 11:25:44 +02:00
Ines Montani
f31876154d Adjust formatting [ci skip] 2019-10-25 11:19:46 +02:00
Kabir Khan
93640373c7 Make entity_ruler ent_id resolution 2x faster and add docs for… (#4513)
* Update entityruler.py

* Making ent_id resolution 2x faster and adding docs

* Fixing newlines in docstrings

* Fixing newlines in docstrings
2019-10-25 11:16:42 +02:00
Ines Montani
cc05d9dad6 Auto-format [ci skip] 2019-10-24 16:21:08 +02:00
Ines Montani
73dc63d3bf Tidy up and auto-format [ci skip] 2019-10-24 16:20:48 +02:00
Ines Montani
6dd2832438 Use numpy.frombuffer instead of fromstring
Deprecation warning says we should do this
2019-10-24 16:18:41 +02:00
Ines Montani
9a849fe54e Explicitly catch warning in test 2019-10-24 16:16:27 +02:00
adrianeboyd
1b0bbe4b76 Update tag maps and docs for English and German (#4501)
* Update English tag_map

Update English tag_map based on this conversion table:
https://universaldependencies.org/tagset-conversion/en-penn-uposf.html

* Update German tag_map

Update German tag_map based on this conversion table:
https://universaldependencies.org/tagset-conversion/de-stts-uposf.html

* Add missing Tiger dependencies to glossary

* Add quotes to definition of TO

* Update POS/TAG tables in docs

Update POS/TAG tables for English and German docs using current
information generated from the tag_maps and GLOSSARY.

* Update warning that -PRON- is specific to English

* Revert docs to default JSON output with convert

* Revert "Revert docs to default JSON output with convert"

This reverts commit 6b78c048f1.
2019-10-24 12:56:05 +02:00
Zhuoru Lin
10d88b09bb Bugfix/fix wikidata train entity linker (#4509)
* Fix labels_discard Nonetype iteration error

* Contributor agreement for Zhuoru Lin

* Enhance EntityLinker.predict() to handle labels_discard is None case.
2019-10-24 12:52:59 +02:00
adrianeboyd
8516e9d53b Support train dict format as JSONL (#4471)
* Support train dict format as JSONL

* Add (overly simple) check for dict vs. tuple to read JSONL lines as
either train dicts or train tuples

* Extend JSON/JSONL roundtrip conversion tests using `docs_to_json()`
and `GoldCorpus.train_tuples`

* Revert docs to default JSON output with convert
2019-10-23 16:01:44 +02:00
Matthew Honnibal
ca7f0e669e Set version to v2.2.2.dev1 2019-10-22 20:11:25 +02:00
Matthew Honnibal
9489c5f6b2 Clip most_similar to range [-1, 1] (fixes #4506) (#4507)
* Clip most_similar to range [-1, 1]

* Add/fix vectors tests

* Fix test
2019-10-22 20:10:42 +02:00
Ines Montani
74a19aeb1c Add xfailing test [ci skip] 2019-10-22 18:18:43 +02:00
Matthew Honnibal
3f6cb618a9 Set version to v2.2.2.dev0 2019-10-22 17:47:36 +02:00
Sofie Van Landeghem
48886afc78 prevent zero-length mem alloc (#4429)
* raise specific error when removing a matcher rule that doesn't exist

* rephrasing

* goldparse init: allocate fields only if doc is not empty

* avoid zero length alloc in saving tokenizer cache

* avoid allocating zero length mem in matcher

* asserts to avoid allocating zero length mem

* fix zero-length allocation in matcher

* bump cymem version

* revert cymem version bump
2019-10-22 16:54:33 +02:00
adrianeboyd
3dfc764577 Free pointers in parser activations (#4486)
* Free pointers in ActivationsC

* Restructure alloc/free for parser activations

* Rewrite/restructure to have allocation and free in parallel functions
in `_parser_model` rather than partially in `_parseC()` in `Parser`.

* Remove `resize_activations` from `_parser_model.pxd`.
2019-10-22 15:06:44 +02:00
tamuhey
fb89f6792b refactor: remove unused variable (#4499) 2019-10-22 14:38:17 +02:00
gustavengstrom
050e2445a8 Adding noun_chunks to the Swedish language model (sv) (#4422)
* Create syntax_iterators.py

Replica of spacy/lang/fr/syntax_iterators.py

* Added import statements for SYNTAX_ITERATORS

* Create gustavengstrom.md

* Added "dobj" to list of labels in noun_chunks method and a test_noun_chunks method to the  Swedish language model.

* Delete README-checkpoint.md


Co-authored-by: Gustav <gustav@davcon.se>
Co-authored-by: Ines Montani <ines@ines.io>
2019-10-21 12:57:06 +02:00
adrianeboyd
f5c551a43a Checks/errors related to ill-formed IOB input in CLI convert and debug-data (#4487)
* Error for ill-formed input to iob_to_biluo()

Check for empty label in iob_to_biluo(), which can result from
ill-formed input.

* Check for empty NER label in debug-data
2019-10-21 12:20:28 +02:00
Sofie Van Landeghem
d5d55312b2 prevent division by zero in most_similar method (#4488) 2019-10-21 12:04:46 +02:00
Pepe Berba
7772d5d3c5 Update vocab.get_vector docs to include features on Fasttext ngram (#4464)
* Update `vocab.get_vector`

* Added contrib agreement
2019-10-20 01:28:18 +02:00
Ines Montani
2c96a5e5b0
Remove lemma attrs on BaseDefaults (#4468) 2019-10-19 23:18:09 +02:00
adrianeboyd
8d3de90bc4 Suppress convert output if writing to stdout (#4472) 2019-10-18 18:12:59 +02:00
Ines Montani
692d7f4291 Fix formatting [ci skip] 2019-10-18 11:33:38 +02:00
Ines Montani
181c01f629 Tidy up and auto-format 2019-10-18 11:27:38 +02:00
Ines Montani
fb11852750 Remove unused imports 2019-10-18 11:06:41 +02:00
adrianeboyd
d359da9687 Replace Entity/MatchStruct with SpanC (#4459)
* Replace MatchStruct with Entity

Replace MatchStruct with Entity since the existing Entity struct is
nearly identical.

* Replace Entity with more general SpanC
2019-10-18 11:01:47 +02:00
adrianeboyd
29e3da6493 Add missing cats to gold annot_tuples in Scorer (#4466)
Add missing `cats` in `Scorer` call to `GoldParse.from_annot_tuples()`
when the `doc` and `gold` have differing lengths.
2019-10-18 11:00:02 +02:00
adrianeboyd
135e3de531 Check for docs with 2+ sentences in debug-data (#4467) 2019-10-18 10:59:16 +02:00
Daniel King
e646956176 Most similar bug (#4446)
* Add batch size indexing

* Don't sort if n == 1

* Add test for most similar vectors issue

* Change > to >=
2019-10-16 23:18:55 +02:00
Anastassia
4a77d03ff7 Fix documentation for the docs_to_json function (#4456) 2019-10-16 23:17:58 +02:00