Commit Graph

183 Commits

Author SHA1 Message Date
Sofie Van Landeghem
06f0a8daa0
Default settings to configurations (#4995)
* fix grad_clip naming

* cleaning up pretrained_vectors out of cfg

* further refactoring Model init's

* move Model building out of pipes

* further refactor to require a model config when creating a pipe

* small fixes

* making cfg in nn_parser more consistent

* fixing nr_class for parser

* fixing nn_parser's nO

* fix printing of loss

* architectures in own file per type, consistent naming

* convenience methods default_tagger_config and default_tok2vec_config

* let create_pipe access default config if available for that component

* default_parser_config

* move defaults to separate folder

* allow reading nlp from package or dir with argument 'name'

* architecture spacy.VocabVectors.v1 to read static vectors from file

* cleanup

* default configs for nel, textcat, morphologizer, tensorizer

* fix imports

* fixing unit tests

* fixes and clean up

* fixing defaults, nO, fix unit tests

* restore parser IO

* fix IO

* 'fix' serialization test

* add *.cfg to manifest

* fix example configs with additional arguments

* replace Morpohologizer with Tagger

* add IO bit when testing overfitting of tagger (currently failing)

* fix IO - don't initialize when reading from disk

* expand overfitting tests to also check IO goes OK

* remove dropout from HashEmbed to fix Tagger performance

* add defaults for sentrec

* update thinc

* always pass a Model instance to a Pipe

* fix piped_added statement

* remove obsolete W029

* remove obsolete errors

* restore byte checking tests (work again)

* clean up test

* further test cleanup

* convert from config to Model in create_pipe

* bring back error when component is not initialized

* cleanup

* remove calls for nlp2.begin_training

* use thinc.api in imports

* allow setting charembed's nM and nC

* fix for hardcoded nM/nC + unit test

* formatting fixes

* trigger build
2020-02-27 18:42:27 +01:00
Ines Montani
de11ea753a Merge branch 'master' into develop 2020-02-18 14:47:23 +01:00
Sofie Van Landeghem
a1b22e90cd serialize ENT_ID (#4852)
* expand serialization test for custom token attribute

* add failing test for issue 4849

* define ENT_ID as attr and use in doc serialization

* fix few typos
2020-01-06 14:57:34 +01:00
Ines Montani
db55577c45
Drop Python 2.7 and 3.5 (#4828)
* Remove unicode declarations

* Remove Python 3.5 and 2.7 from CI

* Don't require pathlib

* Replace compat helpers

* Remove OrderedDict

* Use f-strings

* Set Cython compiler language level

* Fix typo

* Re-add OrderedDict for Table

* Update setup.cfg

* Revert CONTRIBUTING.md

* Revert lookups.md

* Revert top-level.md

* Small adjustments and docs [ci skip]
2019-12-22 01:53:56 +01:00
Ines Montani
158b98a3ef Merge branch 'master' into develop 2019-12-21 18:55:03 +01:00
adrianeboyd
676e75838f Include Doc.cats in serialization of Doc and DocBin (#4774)
* Include Doc.cats in to_bytes()

* Include Doc.cats in DocBin serialization

* Add tests for serialization of cats

Test serialization of cats for Doc and DocBin.
2019-12-06 14:07:39 +01:00
adrianeboyd
b841d3fe75 Add a tagger-based SentenceRecognizer (#4713)
* Add sent_starts to GoldParse

* Add SentTagger pipeline component

Add `SentTagger` pipeline component as a subclass of `Tagger`.

* Model reduces default parameters from `Tagger` to be small and fast
* Hard-coded set of two labels:
  * S (1): token at beginning of sentence
  * I (0): all other sentence positions
* Sets `token.sent_start` values

* Add sentence segmentation to Scorer

Report `sent_p/r/f` for sentence boundaries, which may be provided by
various pipeline components.

* Add sentence segmentation to CLI evaluate

* Add senttagger metrics/scoring to train CLI

* Rename SentTagger to SentenceRecognizer

* Add SentenceRecognizer to spacy.pipes imports

* Add SentenceRecognizer serialization test

* Shorten component name to sentrec

* Remove duplicates from train CLI output metrics
2019-11-28 11:10:07 +01:00
Ines Montani
181c01f629 Tidy up and auto-format 2019-10-18 11:27:38 +02:00
Sofie Van Landeghem
4e7259c6cf Bugfix initializing DocBin with attributes (#4368)
* docbin init fix + documentation fix + unit tests

* newline

* try with zlib instead of gzip (python 2 incompatibilities)
2019-10-03 14:48:45 +02:00
Ines Montani
0226b3bf0e Fix test imports 2019-09-29 17:34:56 +02:00
Ines Montani
3d8fd4b461 Revert #4334 2019-09-29 17:32:12 +02:00
Ines Montani
c9cd516d96 Move tests out of package (#4334)
* Move tests out of package

* Fix typo
2019-09-28 18:05:00 +02:00
Ines Montani
669a7d37ce Exclude vocab when testing to_bytes 2019-09-10 19:45:16 +02:00
Ines Montani
3e8f136ba7 💫 WIP: Basic lookup class scaffolding and JSON for all lemmatizer data (#4178)
* Improve load_language_data helper

* WIP: Add Lookups implementation

* Start moving lemma data over to JSON

* WIP: move data over for more languages

* Convert more languages

* Fix lemmatizer fixtures in tests

* Finish conversion

* Auto-format JSON files

* Fix test for now

* Make sure tables are stored on instance

* Update docstrings

* Update docstrings and errors

* Update test

* Add Lookups.__len__

* Add serialization methods

* Add Lookups.remove_table

* Use msgpack for serialization to disk

* Fix file exists check

* Try using OrderedDict for everything

* Update .flake8 [ci skip]

* Try fixing serialization

* Update test_lookups.py

* Update test_serialize_vocab_strings.py

* Fix serialization for lookups

* Fix lookups

* Fix lookups

* Fix lookups

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Try to fix serialization

* Give up on serialization test

* Xfail more serialization tests for 3.5

* Fix lookups for 2.7
2019-09-09 19:17:55 +02:00
Ines Montani
f580302673 Tidy up and auto-format 2019-08-20 17:36:34 +02:00
Sofie Van Landeghem
0ba1b5eebc CLI scripts for entity linking (wikipedia & generic) (#4091)
* document token ent_kb_id

* document span kb_id

* update pipeline documentation

* prior and context weights as bool's instead

* entitylinker api documentation

* drop for both models

* finish entitylinker documentation

* small fixes

* documentation for KB

* candidate documentation

* links to api pages in code

* small fix

* frequency examples as counts for consistency

* consistent documentation about tensors returned by predict

* add entity linking to usage 101

* add entity linking infobox and KB section to 101

* entity-linking in linguistic features

* small typo corrections

* training example and docs for entity_linker

* predefined nlp and kb

* revert back to similarity encodings for simplicity (for now)

* set prior probabilities to 0 when excluded

* code clean up

* bugfix: deleting kb ID from tokens when entities were removed

* refactor train el example to use either model or vocab

* pretrain_kb example for example kb generation

* add to training docs for KB + EL example scripts

* small fixes

* error numbering

* ensure the language of vocab and nlp stay consistent across serialization

* equality with =

* avoid conflict in errors file

* add error 151

* final adjustements to the train scripts - consistency

* update of goldparse documentation

* small corrections

* push commit

* turn kb_creator into CLI script (wip)

* proper parameters for training entity vectors

* wikidata pipeline split up into two executable scripts

* remove context_width

* move wikidata scripts in bin directory, remove old dummy script

* refine KB script with logs and preprocessing options

* small edits

* small improvements to logging of EL CLI script
2019-08-13 15:38:59 +02:00
svlandeg
dae8a21282 rename entity frequency 2019-07-19 17:40:28 +02:00
svlandeg
ddc73b11a9 fix unicode literals 2019-06-24 12:58:18 +02:00
svlandeg
b76a43bee4 unicode strings 2019-06-19 13:26:33 +02:00
svlandeg
0b0959b363 UTF8 encoding 2019-06-19 13:11:39 +02:00
svlandeg
5c723c32c3 entity vectors in the KB + serialization of them 2019-06-05 18:29:18 +02:00
svlandeg
19e8f339cb deduce entity freq from WP corpus and serialize vocab in WP test 2019-04-29 17:37:29 +02:00
svlandeg
387263d618 simplify chains 2019-04-29 13:58:07 +02:00
svlandeg
54d0cea062 unit test for KB serialization 2019-04-24 23:52:34 +02:00
Ines Montani
7ba3a5d95c 💫 Make serialization methods consistent (#3385)
* Make serialization methods consistent

exclude keyword argument instead of random named keyword arguments and deprecation handling

* Update docs and add section on serialization fields
2019-03-10 19:16:45 +01:00
Matthew Honnibal
27dd820753
Fix vocab deserialization when loading already present lexemes (#3383)
* Fix vocab deserialization bug. Closes #2153

* Un-xfail test for #2153
2019-03-10 17:21:19 +01:00
Matthew Honnibal
61e5ce02a4 Add xfailing test for #2153 2019-03-10 16:36:29 +01:00
Ines Montani
323fc26880 Tidy up and format remaining files 2018-11-30 17:43:08 +01:00
Ines Montani
b6e991440c 💫 Tidy up and auto-format tests (#2967)
* Auto-format tests with black

* Add flake8 config

* Tidy up and remove unused imports

* Fix redefinitions of test functions

* Replace orths_and_spaces with words and spaces

* Fix compatibility with pytest 4.0

* xfail test for now

Test was previously overwritten by following test due to naming conflict, so failure wasn't reported

* Unfail passing test

* Only use fixture via arguments

Fixes pytest 4.0 compatibility
2018-11-27 01:09:36 +01:00
Ines Montani
75f3234404
💫 Refactor test suite (#2568)
## Description

Related issues: #2379 (should be fixed by separating model tests)

* **total execution time down from > 300 seconds to under 60 seconds** 🎉
* removed all model-specific tests that could only really be run manually anyway – those will now live in a separate test suite in the [`spacy-models`](https://github.com/explosion/spacy-models) repository and are already integrated into our new model training infrastructure
* changed all relative imports to absolute imports to prepare for moving the test suite from `/spacy/tests` to `/tests` (it'll now always test against the installed version)
* merged old regression tests into collections, e.g. `test_issue1001-1500.py` (about 90% of the regression tests are very short anyways)
* tidied up and rewrote existing tests wherever possible

### Todo

- [ ] move tests to `/tests` and adjust CI commands accordingly
- [x] move model test suite from internal repo to `spacy-models`
- [x] ~~investigate why `pipeline/test_textcat.py` is flakey~~
- [x] review old regression tests (leftover files) and see if they can be merged, simplified or deleted
- [ ] update documentation on how to run tests


### Types of change
enhancement, tests

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [ ] My changes don't require a change to the documentation, or if they do, I've added all required information.
2018-07-24 23:38:44 +02:00
ines
38e07ade4c Add test for custom tokenizer serialization (resolves #2494) 2018-07-06 12:40:51 +02:00
ines
c2581f9172 Tidy up tokenizer test 2018-07-06 12:40:28 +02:00
ines
526be40823 Add test for 46d8a66 2018-06-29 14:33:12 +02:00
Matthew Honnibal
cf5fcf0546 Update serialization test 2018-03-28 20:12:53 +02:00
Claudiu-Vlad Ursache
e28de12cbd
Ensure files opened in from_disk are closed
Fixes [issue 1706](https://github.com/explosion/spaCy/issues/1706).
2018-02-13 20:49:43 +01:00
ines
1c218397f6 Ensure path in Doc.to_disk/from_disk (resolves ##1521)
Also add Doc serialization tests with both Path and string path options
2017-11-09 02:29:03 +01:00
Matthew Honnibal
4194bc5744 Xfail flakey serialization test 2017-11-08 13:55:13 +01:00
Matthew Honnibal
b0f3ea2200 Fix names of pipeline components
NeuralDependencyParser --> DependencyParser
NeuralEntityRecognizer --> EntityRecognizer
TokenVectorEncoder     --> Tensorizer
NeuralLabeller         --> MultitaskObjective
2017-10-26 12:38:23 +02:00
ines
bf415fd778 Add test for serializing extension attrs (see #1085) 2017-10-19 00:53:08 +02:00
Matthew Honnibal
f0f2739ae3 Add test for serialization issue raised in #1105 2017-10-10 03:57:58 +02:00
Matthew Honnibal
74f08e1ad5 Update test 2017-09-26 06:45:56 -05:00
Matthew Honnibal
42d47c1e5c Fix tagger serialization 2017-08-19 04:16:32 +02:00
Matthew Honnibal
a7309a217d Update tagger serialization 2017-08-18 23:12:05 +02:00
ines
a66cf24ee8 xfail tokenizer serialization tests for now
Tests pass locally, but not on Travis – needs more investigation
2017-06-04 13:58:20 +02:00
ines
3152ee5ca2 Update serialization tests for tokenizer 2017-06-03 17:05:28 +02:00
ines
de974f7bef Add serializer tests for tokenizer 2017-06-03 13:26:34 +02:00
ines
d21459f87d Update serializer tests 2017-06-02 21:42:26 +02:00
ines
d86e7cde93 Add entity recognizer to parser serialization tests 2017-06-02 18:40:06 +02:00
ines
0051c05964 Add tests for serializing parser 2017-06-02 18:37:19 +02:00
ines
cef547a9f0 Add serialization tests for tensorizer 2017-06-02 18:18:30 +02:00
ines
f74a45c1fe Remove unnecessary argument 2017-06-02 18:17:46 +02:00
ines
43b4d63f85 Add serialization tests for tagger 2017-06-02 17:29:34 +02:00
ines
acd65c00f6 Add serialization tests for StringStore and Vocab 2017-06-02 10:57:42 +02:00
ines
7b1ddcc04d Add test for vocab serialization 2017-05-29 01:09:52 +02:00
Matthew Honnibal
7253b4e649 Remove old serialization tests 2017-05-09 18:12:58 +02:00
Matthew Honnibal
f9327343ce Start updating serializer test 2017-05-09 18:12:03 +02:00
Ines Montani
38d60f6b90 Modernise serializer I/O tests and don't depend on models where possible 2017-01-13 02:24:56 +01:00
Ines Montani
61f1ca09c2 Modernise serializer codecs tests 2017-01-12 21:58:55 +01:00
Ines Montani
5dbc6e59f6 Modernise Huffman tests 2017-01-12 21:58:40 +01:00
Ines Montani
edeeeccea5 Modernise packer tests and don't depend on models where possible 2017-01-12 21:58:07 +01:00
Ines Montani
d084676cd0 Modernise and merge serialization tests 2017-01-12 21:57:19 +01:00
Matthew Honnibal
79aa03fe98 Test Issue #514: Serializer fails when new entity type has been added. 2016-10-23 17:41:44 +02:00
Matthew Honnibal
4de30a8e38 Test Issue #514: Serialization fails after adding a new entity label. 2016-10-23 16:40:27 +02:00
Matthew Honnibal
e99b3f5322 Test Issue #459: Fail to deserialize empty doc 2016-10-23 16:30:22 +02:00
Matthew Honnibal
99ff8b902f Test that huffman codec works with empty freqs dict 2016-10-23 16:27:45 +02:00
Matthew Honnibal
c3a8a1cf51 Update serializer test. 2016-10-18 16:18:46 +02:00
Matthew Honnibal
fd65cf6cbb Finish refactoring data loading 2016-09-24 20:26:17 +02:00
Matthew Honnibal
c1c11a8ae0 * Fix formatting on serializer tests 2016-05-02 16:07:21 +02:00
Wolfgang Seeker
fa961ea694 add tests for serialization bug 2016-05-02 11:01:56 +02:00
Henning Peters
a473d6e937 fix tests (use english model) 2016-04-12 16:41:57 +02:00
Henning Peters
c12d3dd200 add __init__.py to empty package dirs 2016-03-14 11:28:03 +01:00
Henning Peters
3b5f1e753b py26 compatibility 2016-02-10 14:32:54 +01:00
Henning Peters
235f094534 untangle data_path/via 2016-01-16 12:23:45 +01:00
Matthew Honnibal
aec130af56 Use util.Package class for io
Previous Sputnik integration caused API change: Vocab, Tagger, etc
were loaded via a from_package classmethod, that required a
sputnik.Package instance. This forced users to first create a
sputnik.Sputnik() instance, in order to acquire a Package via
sp.pool().

Instead I've created a small file-system shim, util.Package, which
allows classes to have a .load() classmethod, that accepts either
util.Package objects, or strings. We can later gut the internals
of this and make it a proxy for Sputnik if we need more functionality
that should live in the Sputnik library.

Sputnik is now only used to download and install the data, in
spacy.en.download
2015-12-29 18:00:48 +01:00
Matthew Honnibal
6bb9c7f311 Merge pull request #202 from henningpeters/sputnik
access model via sputnik
2015-12-28 03:29:53 +11:00
Henning Peters
4ada39f472 avoid writing to /tmp (not cross-platform compatible) 2015-12-16 19:53:06 +01:00
Henning Peters
9027cef3bc access model via sputnik 2015-12-07 06:01:28 +01:00
Matthew Honnibal
ee3f9ba581 * Fix test of serializer 2015-11-03 19:45:16 +11:00
Matthew Honnibal
d06ba26371 * Fix test of serializer 2015-11-03 19:43:27 +11:00
Matthew Honnibal
85372468e3 * Fix serialize test 2015-11-03 08:51:33 +01:00
Matthew Honnibal
3f44b3e43f * Mark serializer test as requiring models 2015-11-03 18:07:08 +11:00
Matthew Honnibal
5e040855a5 * Ensure morphological features and lemmas are loaded in from_array, re Issue #152 2015-11-03 17:56:50 +11:00
Matthew Honnibal
4e16f9e435 * Move tests underneath spacy/ 2015-10-26 00:07:31 +11:00