* adding spans to doc_annotation in Example.to_dict
* to_dict compatible with from_dict: tuples instead of spans
* use strings for label and kb_id
* Simplify test
* Update data formats docs
Co-authored-by: Stefanie Wolf <stefanie.wolf@vitecsoftware.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* add additional REL_OP
* change to condition and new rel_op symbols
* add operators to docs
* add the anchor while we're in here
* add tests
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
After the precomputable affine table of shape [nB, nF, nO, nP] is
computed, padding with shape [1, nF, nO, nP] is assigned to the first
row of the precomputed affine table. However, when we are indexing the
precomputed table, we get a row of shape [nF, nO, nP]. CuPy versions
before 10.0 cannot paper over this shape difference.
This change fixes compatibility with CuPy < 10.0 by squeezing the first
dimension of the padding before assignment.
* precompute_hiddens/Parser: do not look up CPU ops
`get_ops("cpu")` is quite expensive. To avoid this, we want to cache the
result as in #11068. However, for 3.x we do not want to change the ABI.
So we avoid the expensive lookup by using NumpyOps. This should have a
minimal impact, since `get_ops("cpu")` was only used when the model ops
were `CupyOps`. If the ops are `AppleOps`, we are still passing through
the correct BLAS implementation.
* _NUMPY_OPS -> NUMPY_OPS
* `strings`: More roubust type checking of keys/IDs, coerce `int`-like types to `hash_t`
* Preserve existing public API behaviour
* Fix return type
* Replace `bool` with `bint`, rename to `_try_coerce_to_hash`, replace `id` with `hash`
* Avoid unnecessary re-encoding and re-calculation of strings and hashs respectively
* Rename variables named `hash`
Add comment on early return
* `TrainablePipe`: Add NVTX range decorator
* Annotate `TrainablePipe` subclasses with NVTX ranges
* Export function signature to allow introspection of args in tests
* Revert "Annotate `TrainablePipe` subclasses with NVTX ranges"
This reverts commit d8684f7372.
* Revert "Export function signature to allow introspection of args in tests"
This reverts commit f4405ca3ad.
* Revert "`TrainablePipe`: Add NVTX range decorator"
This reverts commit 26536eb6b8.
* Add `spacy.pipes_with_nvtx_range` pipeline callback
* Show warnings for all missing user-defined pipe functions that need to be annotated
Fix imports, typos
* Rename `DEFAULT_ANNOTATABLE_PIPE_METHODS` to `DEFAULT_NVTX_ANNOTATABLE_PIPE_METHODS`
Reorder import
* Walk model nodes directly whilst applying NVTX ranges
Ignore pipe method wrapper when applying range
* Min_max_operators
1. Modified API and Usage for spaCy website to include min_max operator
2. Modified matcher.pyx to include min_max function {n,m} and its variants
3. Modified schemas.py to include min_max validation error
4. Added test cases to test_matcher_api.py, test_matcher_logic.py and test_pattern_validation.py
* attempt to fix mypy/pydantic compat issue
* formatting
* Update spacy/tests/matcher/test_pattern_validation.py
Co-authored-by: Source-Shen <82353723+Source-Shen@users.noreply.github.com>
Co-authored-by: svlandeg <svlandeg@github.com>
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* vectors: avoid expensive comparisons between numpy ints and Python ints
* vectors: avoid failure on lists of ints
* Convert another numpy int to Python
Distinguish between vectors that are 0 vs. missing vectors when warning
about missing vectors.
Update `Doc.has_vector` to match `Span.has_vector` and
`Token.has_vector` for cases where the vocab has vectors but none of the
tokens in the container have vectors.
* Handle Russian, Ukrainian and Bulgarian
* Corrections
* Correction
* Correction to comment
* Changes based on review
* Correction
* Reverted irrelevant change in punctuation.py
* Remove unnecessary group
* Reverted accidental change
* Try cloning repo from main & master
* fixup! Try cloning repo from main & master
* fixup! fixup! Try cloning repo from main & master
* refactor clone and check for repo:branch existence
* spacing fix
* make mypy happy
* type util function
* Update spacy/cli/project/clone.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
Co-authored-by: Peter Baumgartner <5107405+pmbaumgartner@users.noreply.github.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Enable flag on spacy.load: foundation for include, enable arguments.
* Enable flag on spacy.load: fixed tests.
* Enable flag on spacy.load: switched from pretrained model to empty model with added pipes for tests.
* Enable flag on spacy.load: switched to more consistent error on misspecification of component activity. Test refactoring. Added to default config.
* Enable flag on spacy.load: added support for fields not in pipeline.
* Enable flag on spacy.load: removed serialization fields from supported fields.
* Enable flag on spacy.load: removed 'enable' from config again.
* Enable flag on spacy.load: relaxed checks in _resolve_component_activation_status() to allow non-standard pipes.
* Enable flag on spacy.load: fixed relaxed checks for _resolve_component_activation_status() to allow non-standard pipes. Extended tests.
* Enable flag on spacy.load: comments w.r.t. resolution workarounds.
* Enable flag on spacy.load: remove include fields. Update website docs.
* Enable flag on spacy.load: updates w.r.t. changes in master.
* Implement Doc.from_json(): update docstrings.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): remove newline.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Implement Doc.from_json(): change error message for E1038.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
* Enable flag on spacy.load: wrapped docstring for _resolve_component_status() at 80 chars.
* Enable flag on spacy.load: changed exmples for enable flag.
* Remove newline.
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix docstring for Language._resolve_component_status().
* Rename E1038 to E1042.
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* account for NER labels with a hyphen in the name
* cleanup
* fix docstring
* add return type to helper method
* shorter method and few more occurrences
* user helper method across repo
* fix circular import
* partial revert to avoid circular import
The float -1 was returned rather than the integer -1 as the row for
unknown keys. This doesn't introduce a realy bug, since such floats
cast (without issues) to int in the conversion to NumPy arrays. Still,
it's nice to to do the correct thing :).
The `forward` of `precomputable_biaffine` performs matrix multiplication
and then `vstack`s the result with padding. This creates a temporary
array used for the output of matrix concatenation.
This change avoids the temporary by pre-allocating an array that is
large enough for the output of matrix multiplication plus padding and
fills the array in-place.
This gave me a small speedup (a bit over 100 WPS) on de_core_news_lg on
M1 Max (after changing thinc-apple-ops to support in-place gemm as BLIS
does).
* detect cycle during projectivize
* not complete test to detect cycle in projectivize
* boolean to int type to propagate error
* use unordered_set instead of set
* moved error message to errors
* removed cycle from test case
* use find instead of count
* cycle check: only perform one lookup
* Return bool again from _has_head_as_ancestor
Communicate presence of cycles through an output argument.
* Switch to returning std::pair to encode presence of a cycle
The has_cycle pointer is too easy to misuse. Ideally, we would have a
sum type like Rust's `Result` here, but C++ is not there yet.
* _is_non_proj_arc: clarify what we are returning
* _has_head_as_ancestor: remove count
We are now explicitly checking for cycles, so the algorithm must always
terminate. Either we encounter the head, we find a root, or a cycle.
* _is_nonproj_arc: simplify condition
* Another refactor using C++ exceptions
* Remove unused error code
* Print graph with cycle on exception
* Include .hh files in source package
* Add FIXME comment
* cycle detection test
* find cycle when starting from problematic vertex
Co-authored-by: Daniël de Kok <me@danieldk.eu>
