* Use isort with Black profile
* isort all the things
* Fix import cycles as a result of import sorting
* Add DOCBIN_ALL_ATTRS type definition
* Add isort to requirements
* Remove isort from build dependencies check
* Typo
* enable fuzzy matching
* add fuzzy param to EntityMatcher
* include rapidfuzz_capi
not yet used
* fix type
* add FUZZY predicate
* add fuzzy attribute list
* fix type properly
* tidying
* remove unnecessary dependency
* handle fuzzy sets
* simplify fuzzy sets
* case fix
* switch to FUZZYn predicates
use Levenshtein distance.
remove fuzzy param.
remove rapidfuzz_capi.
* revert changes added for fuzzy param
* switch to polyleven
(Python package)
* enable fuzzy matching
* add fuzzy param to EntityMatcher
* include rapidfuzz_capi
not yet used
* fix type
* add FUZZY predicate
* add fuzzy attribute list
* fix type properly
* tidying
* remove unnecessary dependency
* handle fuzzy sets
* simplify fuzzy sets
* case fix
* switch to FUZZYn predicates
use Levenshtein distance.
remove fuzzy param.
remove rapidfuzz_capi.
* revert changes added for fuzzy param
* switch to polyleven
(Python package)
* fuzzy match only on oov tokens
* remove polyleven
* exclude whitespace tokens
* don't allow more edits than characters
* fix min distance
* reinstate FUZZY operator
with length-based distance function
* handle sets inside regex operator
* remove is_oov check
* attempt build fix
no mypy failure locally
* re-attempt build fix
* don't overwrite fuzzy param value
* move fuzzy_match
to its own Python module to allow patching
* move fuzzy_match back inside Matcher
simplify logic and add tests
* Format tests
* Parametrize fuzzyn tests
* Parametrize and merge fuzzy+set tests
* Format
* Move fuzzy_match to a standalone method
* Change regex kwarg type to bool
* Add types for fuzzy_match
- Refactor variable names
- Add test for symmetrical behavior
* Parametrize fuzzyn+set tests
* Minor refactoring for fuzz/fuzzy
* Make fuzzy_match a Matcher kwarg
* Update type for _default_fuzzy_match
* don't overwrite function param
* Rename to fuzzy_compare
* Update fuzzy_compare default argument declarations
* allow fuzzy_compare override from EntityRuler
* define new Matcher keyword arg
* fix type definition
* Implement fuzzy_compare config option for EntityRuler and SpanRuler
* Rename _default_fuzzy_compare to fuzzy_compare, remove from reexported objects
* Use simpler fuzzy_compare algorithm
* Update types
* Increase minimum to 2 in fuzzy_compare to allow one transposition
* Fix predicate keys and matching for SetPredicate with FUZZY and REGEX
* Add FUZZY6..9
* Add initial docs
* Increase default fuzzy to rounded 30% of pattern length
* Update docs for fuzzy_compare in components
* Update EntityRuler and SpanRuler API docs
* Rename EntityRuler and SpanRuler setting to matcher_fuzzy_compare
To having naming similar to `phrase_matcher_attr`, rename
`fuzzy_compare` setting for `EntityRuler` and `SpanRuler` to
`matcher_fuzzy_compare. Organize next to `phrase_matcher_attr` in docs.
* Fix schema aliases
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix typo
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add FUZZY6-9 operators and update tests
* Parameterize test over greedy
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix type for fuzzy_compare to remove Optional
* Rename to spacy.levenshtein_compare.v1, move to spacy.matcher.levenshtein
* Update docs following levenshtein_compare renaming
Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add SpanRuler component
Add a `SpanRuler` component similar to `EntityRuler` that saves a list
of matched spans to `Doc.spans[spans_key]`. The matches from the token
and phrase matchers are deduplicated and sorted before assignment but
are not otherwise filtered.
* Update spacy/pipeline/span_ruler.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Fix cast
* Add self.key property
* Use number of patterns as length
* Remove patterns kwarg from init
* Update spacy/tests/pipeline/test_span_ruler.py
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Add options for spans filter and setting to ents
* Add `spans_filter` option as a registered function'
* Make `spans_key` optional and if `None`, set to `doc.ents` instead of
`doc.spans[spans_key]`.
* Update and generalize tests
* Add test for setting doc.ents, fix key property type
* Fix typing
* Allow independent doc.spans and doc.ents
* If `spans_key` is set, set `doc.spans` with `spans_filter`.
* If `annotate_ents` is set, set `doc.ents` with `ents_fitler`.
* Use `util.filter_spans` by default as `ents_filter`.
* Use a custom warning if the filter does not work for `doc.ents`.
* Enable use of SpanC.id in Span
* Support id in SpanRuler as Span.id
* Update types
* `id` can only be provided as string (already by `PatternType`
definition)
* Update all uses of Span.id/ent_id in Doc
* Rename Span id kwarg to span_id
* Update types and docs
* Add ents filter to mimic EntityRuler overwrite_ents
* Refactor `ents_filter` to take `entities, spans` args for more
filtering options
* Give registered filters more descriptive names
* Allow registered `filter_spans` filter
(`spacy.first_longest_spans_filter.v1`) to take any number of
`Iterable[Span]` objects as args so it can be used for spans filter
or ents filter
* Implement future entity ruler as span ruler
Implement a compatible `entity_ruler` as `future_entity_ruler` using
`SpanRuler` as the underlying component:
* Add `sort_key` and `sort_reverse` to allow the sorting behavior to be
customized. (Necessary for the same sorting/filtering as in
`EntityRuler`.)
* Implement `overwrite_overlapping_ents_filter` and
`preserve_existing_ents_filter` to support
`EntityRuler.overwrite_ents` settings.
* Add `remove_by_id` to support `EntityRuler.remove` functionality.
* Refactor `entity_ruler` tests to parametrize all tests to test both
`entity_ruler` and `future_entity_ruler`
* Implement `SpanRuler.token_patterns` and `SpanRuler.phrase_patterns`
properties.
Additional changes:
* Move all config settings to top-level attributes to avoid duplicating
settings in the config vs. `span_ruler/cfg`. (Also avoids a lot of
casting.)
* Format
* Fix filter make method name
* Refactor to use same error for removing by label or ID
* Also provide existing spans to spans filter
* Support ids property
* Remove token_patterns and phrase_patterns
* Update docstrings
* Add span ruler docs
* Fix types
* Apply suggestions from code review
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
* Move sorting into filters
* Check for all tokens in seen tokens in entity ruler filters
* Remove registered sort key
* Set Token.ent_id in a backwards-compatible way in Doc.set_ents
* Remove sort options from API docs
* Update docstrings
* Rename entity ruler filters
* Fix and parameterize scoring
* Add id to Span API docs
* Fix typo in API docs
* Include explicit labeled=True for scorer
Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com>
