# coding: utf8 # cython: infer_types=True # cython: bounds_check=False # cython: profile=True from __future__ import unicode_literals from libc.string cimport memcpy, memset from libc.stdlib cimport malloc, free import numpy from cymem.cymem cimport Pool from thinc.neural.util import get_array_module from .doc cimport Doc, set_children_from_heads, token_by_start, token_by_end from .span cimport Span from .token cimport Token from ..lexeme cimport Lexeme, EMPTY_LEXEME from ..structs cimport LexemeC, TokenC from ..attrs cimport TAG from ..attrs import intify_attrs from ..util import SimpleFrozenDict from ..errors import Errors cdef class Retokenizer: """Helper class for doc.retokenize() context manager.""" cdef Doc doc cdef list merges cdef list splits cdef set tokens_to_merge def __init__(self, doc): self.doc = doc self.merges = [] self.splits = [] self.tokens_to_merge = set() def merge(self, Span span, attrs=SimpleFrozenDict()): """Mark a span for merging. The attrs will be applied to the resulting token. """ for token in span: if token.i in self.tokens_to_merge: raise ValueError(Errors.E102.format(token=repr(token))) self.tokens_to_merge.add(token.i) attrs = intify_attrs(attrs, strings_map=self.doc.vocab.strings) self.merges.append((span, attrs)) def split(self, Token token, orths, heads, deps=[], attrs=SimpleFrozenDict()): """Mark a Token for splitting, into the specified orths. The attrs will be applied to each subtoken. """ attrs = intify_attrs(attrs, strings_map=self.doc.vocab.strings) self.splits.append((token.i, orths, heads, deps, attrs)) def __enter__(self): self.merges = [] self.splits = [] return self def __exit__(self, *args): # Do the actual merging here if len(self.merges) > 1: _bulk_merge(self.doc, self.merges) elif len(self.merges) == 1: (span, attrs) = self.merges[0] start = span.start end = span.end _merge(self.doc, start, end, attrs) offset = 0 # Iterate in order, to keep the offset simple. for token_index, orths, heads, deps, attrs in sorted(self.splits): _split(self.doc, token_index + offset, orths, heads, deps, attrs) # Adjust for the previous tokens offset += len(orths)-1 def _merge(Doc doc, int start, int end, attributes): """Retokenize the document, such that the span at `doc.text[start_idx : end_idx]` is merged into a single token. If `start_idx` and `end_idx `do not mark start and end token boundaries, the document remains unchanged. start_idx (int): Character index of the start of the slice to merge. end_idx (int): Character index after the end of the slice to merge. **attributes: Attributes to assign to the merged token. By default, attributes are inherited from the syntactic root of the span. RETURNS (Token): The newly merged token, or `None` if the start and end indices did not fall at token boundaries. """ cdef Span span = doc[start:end] cdef int start_char = span.start_char cdef int end_char = span.end_char # Resize the doc.tensor, if it's set. Let the last row for each token stand # for the merged region. To do this, we create a boolean array indicating # whether the row is to be deleted, then use numpy.delete if doc.tensor is not None and doc.tensor.size != 0: doc.tensor = _resize_tensor(doc.tensor, [(start, end)]) # Get LexemeC for newly merged token new_orth = ''.join([t.text_with_ws for t in span]) if span[-1].whitespace_: new_orth = new_orth[:-len(span[-1].whitespace_)] cdef const LexemeC* lex = doc.vocab.get(doc.mem, new_orth) # House the new merged token where it starts cdef TokenC* token = &doc.c[start] token.spacy = doc.c[end-1].spacy for attr_name, attr_value in attributes.items(): if attr_name == TAG: doc.vocab.morphology.assign_tag(token, attr_value) else: Token.set_struct_attr(token, attr_name, attr_value) # Make sure ent_iob remains consistent if doc.c[end].ent_iob == 1 and token.ent_iob in (0, 2): if token.ent_type == doc.c[end].ent_type: token.ent_iob = 3 else: # If they're not the same entity type, let them be two entities doc.c[end].ent_iob = 3 # Begin by setting all the head indices to absolute token positions # This is easier to work with for now than the offsets # Before thinking of something simpler, beware the case where a # dependency bridges over the entity. Here the alignment of the # tokens changes. span_root = span.root.i token.dep = span.root.dep # We update token.lex after keeping span root and dep, since # setting token.lex will change span.start and span.end properties # as it modifies the character offsets in the doc token.lex = lex for i in range(doc.length): doc.c[i].head += i # Set the head of the merged token, and its dep relation, from the Span token.head = doc.c[span_root].head # Adjust deps before shrinking tokens # Tokens which point into the merged token should now point to it # Subtract the offset from all tokens which point to >= end offset = (end - start) - 1 for i in range(doc.length): head_idx = doc.c[i].head if start <= head_idx < end: doc.c[i].head = start elif head_idx >= end: doc.c[i].head -= offset # Now compress the token array for i in range(end, doc.length): doc.c[i - offset] = doc.c[i] for i in range(doc.length - offset, doc.length): memset(&doc.c[i], 0, sizeof(TokenC)) doc.c[i].lex = &EMPTY_LEXEME doc.length -= offset for i in range(doc.length): # ...And, set heads back to a relative position doc.c[i].head -= i # Set the left/right children, left/right edges set_children_from_heads(doc.c, doc.length) # Clear the cached Python objects # Return the merged Python object return doc[start] def _bulk_merge(Doc doc, merges): """Retokenize the document, such that the spans described in 'merges' are merged into a single token. This method assumes that the merges are in the same order at which they appear in the doc, and that merges do not intersect each other in any way. merges: Tokens to merge, and corresponding attributes to assign to the merged token. By default, attributes are inherited from the syntactic root of the span. RETURNS (Token): The first newly merged token. """ cdef Span span cdef const LexemeC* lex cdef Pool mem = Pool() tokens = mem.alloc(len(merges), sizeof(TokenC)) spans = [] def _get_start(merge): return merge[0].start merges.sort(key=_get_start) for merge_index, (span, attributes) in enumerate(merges): start = span.start end = span.end spans.append(span) # House the new merged token where it starts token = &doc.c[start] tokens[merge_index] = token # Assign attributes for attr_name, attr_value in attributes.items(): if attr_name == TAG: doc.vocab.morphology.assign_tag(token, attr_value) else: Token.set_struct_attr(token, attr_name, attr_value) # Resize the doc.tensor, if it's set. Let the last row for each token stand # for the merged region. To do this, we create a boolean array indicating # whether the row is to be deleted, then use numpy.delete if doc.tensor is not None and doc.tensor.size != 0: doc.tensor = _resize_tensor(doc.tensor, [(m[1][0].start, m[1][0].end) for m in merges]) # Memorize span roots and sets dependencies of the newly merged # tokens to the dependencies of their roots. span_roots = [] for i, span in enumerate(spans): span_roots.append(span.root.i) tokens[i].dep = span.root.dep # We update token.lex after keeping span root and dep, since # setting token.lex will change span.start and span.end properties # as it modifies the character offsets in the doc for token_index in range(len(merges)): new_orth = ''.join([t.text_with_ws for t in spans[token_index]]) if spans[token_index][-1].whitespace_: new_orth = new_orth[:-len(spans[token_index][-1].whitespace_)] lex = doc.vocab.get(doc.mem, new_orth) tokens[token_index].lex = lex # We set trailing space here too tokens[token_index].spacy = doc.c[spans[token_index].end-1].spacy # Begin by setting all the head indices to absolute token positions # This is easier to work with for now than the offsets # Before thinking of something simpler, beware the case where a # dependency bridges over the entity. Here the alignment of the # tokens changes. for i in range(doc.length): doc.c[i].head += i # Set the head of the merged token from the Span for i in range(len(merges)): tokens[i].head = doc.c[span_roots[i]].head # Adjust deps before shrinking tokens # Tokens which point into the merged token should now point to it # Subtract the offset from all tokens which point to >= end offsets = [] current_span_index = 0 current_offset = 0 for i in range(doc.length): if current_span_index < len(spans) and i == spans[current_span_index].end: #last token was the last of the span current_offset += (spans[current_span_index].end - spans[current_span_index].start) -1 current_span_index += 1 if current_span_index < len(spans) and \ spans[current_span_index].start <= i < spans[current_span_index].end: offsets.append(spans[current_span_index].start - current_offset) else: offsets.append(i - current_offset) for i in range(doc.length): doc.c[i].head = offsets[doc.c[i].head] # Now compress the token array offset = 0 in_span = False span_index = 0 for i in range(doc.length): if in_span and i == spans[span_index].end: # First token after a span in_span = False span_index += 1 if span_index < len(spans) and i == spans[span_index].start: # First token in a span doc.c[i - offset] = doc.c[i] # move token to its place offset += (spans[span_index].end - spans[span_index].start) - 1 in_span = True if not in_span: doc.c[i - offset] = doc.c[i] # move token to its place for i in range(doc.length - offset, doc.length): memset(&doc.c[i], 0, sizeof(TokenC)) doc.c[i].lex = &EMPTY_LEXEME doc.length -= offset # ...And, set heads back to a relative position for i in range(doc.length): doc.c[i].head -= i # Set the left/right children, left/right edges set_children_from_heads(doc.c, doc.length) # Make sure ent_iob remains consistent for (span, _) in merges: if(span.end < len(offsets)): #if it's not the last span token_after_span_position = offsets[span.end] if doc.c[token_after_span_position].ent_iob == 1\ and doc.c[token_after_span_position - 1].ent_iob in (0, 2): if doc.c[token_after_span_position - 1].ent_type == doc.c[token_after_span_position].ent_type: doc.c[token_after_span_position - 1].ent_iob = 3 else: # If they're not the same entity type, let them be two entities doc.c[token_after_span_position].ent_iob = 3 # Return the merged Python object return doc[spans[0].start] def _resize_tensor(tensor, ranges): delete = [] for start, end in ranges: for i in range(start, end-1): delete.append(i) xp = get_array_module(tensor) return xp.delete(tensor, delete, axis=0) def _split(Doc doc, int token_index, orths, heads, deps, attrs): """Retokenize the document, such that the token at `doc[token_index]` is split into tokens with the orth 'orths' token_index(int): token index of the token to split. orths: IDs of the verbatim text content of the tokens to create **attributes: Attributes to assign to each of the newly created tokens. By default, attributes are inherited from the original token. RETURNS (Token): The first newly created token. """ cdef int nb_subtokens = len(orths) cdef const LexemeC* lex cdef TokenC* token cdef TokenC orig_token = doc.c[token_index] if(len(heads) != nb_subtokens): raise ValueError(Errors.E115) token_head_index = -1 for index, head in enumerate(heads): if head == 0: if token_head_index != -1: raise ValueError(Errors.E114) token_head_index = index if token_head_index == -1: raise ValueError(Errors.E113) # First, make the dependencies absolutes, and adjust all possible dependencies before # creating the tokens for i in range(doc.length): doc.c[i].head += i # Adjust dependencies offset = nb_subtokens - 1 for i in range(doc.length): head_idx = doc.c[i].head if head_idx == token_index: doc.c[i].head = token_head_index elif head_idx > token_index: doc.c[i].head += offset new_token_head = doc.c[token_index].head # Double doc.c max_length if necessary (until big enough for all new tokens) while doc.length + nb_subtokens - 1 >= doc.max_length: doc._realloc(doc.length * 2) # Move tokens after the split to create space for the new tokens doc.length = len(doc) + nb_subtokens -1 for token_to_move in range(doc.length - 1, token_index, -1): doc.c[token_to_move + nb_subtokens - 1] = doc.c[token_to_move] # Host the tokens in the newly created space cdef int idx_offset = 0 for i, orth in enumerate(orths): token = &doc.c[token_index + i] lex = doc.vocab.get(doc.mem, orth) token.lex = lex # Update the character offset of the subtokens if i != 0: token.idx = orig_token.idx + idx_offset idx_offset += len(orth) # Set token.spacy to False for all non-last split tokens, and # to origToken.spacy for the last token if (i < nb_subtokens - 1): token.spacy = False else: token.spacy = orig_token.spacy # Apply attrs to each subtoken for attr_name, attr_value in attrs.items(): if attr_name == TAG: doc.vocab.morphology.assign_tag(token, attr_value) else: Token.set_struct_attr(token, attr_name, attr_value) # Make IOB consistent if (orig_token.ent_iob == 3): if i == 0: token.ent_iob = 3 else: token.ent_iob = 1 else: # In all other cases subtokens inherit iob from origToken token.ent_iob = orig_token.ent_iob # Use the head of the new token everywhere. This will be partially overwritten later on. token.head = new_token_head # Transform the dependencies into relative ones again for i in range(doc.length): doc.c[i].head -= i # Assign correct dependencies to the inner token for i, head in enumerate(heads): if head != 0: # the token's head's head is already correct doc.c[token_index + i].head = head for i, dep in enumerate(deps): doc[token_index + i].dep = dep # set children from head set_children_from_heads(doc.c, doc.length)