from wasabi import Printer from ...gold import iob_to_biluo from ...util import minibatch from .conll_ner2json import n_sents_info def iob2json(input_data, n_sents=10, no_print=False, *args, **kwargs): """ Convert IOB files with one sentence per line and tags separated with '|' into JSON format for use with train cli. IOB and IOB2 are accepted. Sample formats: I|O like|O London|I-GPE and|O New|B-GPE York|I-GPE City|I-GPE .|O I|O like|O London|B-GPE and|O New|B-GPE York|I-GPE City|I-GPE .|O I|PRP|O like|VBP|O London|NNP|I-GPE and|CC|O New|NNP|B-GPE York|NNP|I-GPE City|NNP|I-GPE .|.|O I|PRP|O like|VBP|O London|NNP|B-GPE and|CC|O New|NNP|B-GPE York|NNP|I-GPE City|NNP|I-GPE .|.|O """ msg = Printer(no_print=no_print) docs = read_iob(input_data.split("\n")) if n_sents > 0: n_sents_info(msg, n_sents) docs = merge_sentences(docs, n_sents) return docs def read_iob(raw_sents): sentences = [] for line in raw_sents: if not line.strip(): continue tokens = [t.split("|") for t in line.split()] if len(tokens[0]) == 3: words, pos, iob = zip(*tokens) elif len(tokens[0]) == 2: words, iob = zip(*tokens) pos = ["-"] * len(words) else: raise ValueError( "The sentence-per-line IOB/IOB2 file is not formatted correctly. Try checking whitespace and delimiters. See https://spacy.io/api/cli#convert" ) biluo = iob_to_biluo(iob) sentences.append( [ {"orth": w, "tag": p, "ner": ent} for (w, p, ent) in zip(words, pos, biluo) ] ) sentences = [{"tokens": sent} for sent in sentences] paragraphs = [{"sentences": [sent]} for sent in sentences] docs = [{"id": i, "paragraphs": [para]} for i, para in enumerate(paragraphs)] return docs def merge_sentences(docs, n_sents): merged = [] for group in minibatch(docs, size=n_sents): group = list(group) first = group.pop(0) to_extend = first["paragraphs"][0]["sentences"] for sent in group: to_extend.extend(sent["paragraphs"][0]["sentences"]) merged.append(first) return merged