cimport cython from libc.string cimport memcpy, memset import numpy import struct from ..lexeme cimport EMPTY_LEXEME from ..typedefs cimport attr_t, flags_t from ..attrs cimport attr_id_t from ..attrs cimport ID, ORTH, NORM, LOWER, SHAPE, PREFIX, SUFFIX, LENGTH, CLUSTER from ..attrs cimport POS, LEMMA, TAG, DEP, HEAD, SPACY, ENT_IOB, ENT_TYPE from ..parts_of_speech import UNIV_POS_NAMES from ..parts_of_speech cimport CONJ, PUNCT from ..lexeme cimport check_flag from ..lexeme cimport get_attr as get_lex_attr from .spans import Span from .token cimport Token from ..serialize.bits cimport BitArray DEF PADDING = 5 cdef int bounds_check(int i, int length, int padding) except -1: if (i + padding) < 0: raise IndexError if (i - padding) >= length: raise IndexError cdef attr_t get_token_attr(const TokenC* token, attr_id_t feat_name) nogil: if feat_name == LEMMA: return token.lemma elif feat_name == POS: return token.pos elif feat_name == TAG: return token.tag elif feat_name == DEP: return token.dep elif feat_name == HEAD: return token.head elif feat_name == SPACY: return token.spacy elif feat_name == ENT_IOB: return token.ent_iob elif feat_name == ENT_TYPE: return token.ent_type else: return get_lex_attr(token.lex, feat_name) cdef class Doc: """ Container class for annotated text. Constructed via English.__call__ or Tokenizer.__call__. """ def __init__(self, Vocab vocab, orths_and_spaces=None): self.vocab = vocab size = 20 self.mem = Pool() # Guarantee self.lex[i-x], for any i >= 0 and x < padding is in bounds # However, we need to remember the true starting places, so that we can # realloc. data_start = self.mem.alloc(size + (PADDING*2), sizeof(TokenC)) cdef int i for i in range(size + (PADDING*2)): data_start[i].lex = &EMPTY_LEXEME self.data = data_start + PADDING self.max_length = size self.length = 0 self.is_tagged = False self.is_parsed = False self._py_tokens = [] cdef const LexemeC* lex cdef attr_t orth cdef bint space if orths_and_spaces is not None: for orth, space in orths_and_spaces: lex = self.vocab._by_orth.get(orth) if lex != NULL: assert lex.orth == orth self.push_back(lex, space) else: raise Exception('Lexeme not found: %d' % orth) def __getitem__(self, object i): """Get a token. Returns: token (Token): """ if isinstance(i, slice): if i.step is not None: raise ValueError("Stepped slices not supported in Span objects." "Try: list(doc)[start:stop:step] instead.") return Span(self, i.start, i.stop, label=0) if i < 0: i = self.length + i bounds_check(i, self.length, PADDING) if self._py_tokens[i] is not None: return self._py_tokens[i] else: return Token.cinit(self.vocab, &self.data[i], i, self) def __iter__(self): """Iterate over the tokens. Yields: token (Token): """ cdef int i for i in range(self.length): if self._py_tokens[i] is not None: yield self._py_tokens[i] else: yield Token.cinit(self.vocab, &self.data[i], i, self) def __len__(self): return self.length def __unicode__(self): return u''.join([t.string for t in self]) @property def string(self): return unicode(self) @property def ents(self): """Yields named-entity Span objects. Iterate over the span to get individual Token objects, or access the label: >>> from spacy.en import English >>> nlp = English() >>> tokens = nlp(u'Mr. Best flew to New York on Saturday morning.') >>> ents = list(tokens.ents) >>> ents[0].label, ents[0].label_, ''.join(t.orth_ for t in ents[0]) (112504, u'PERSON', u'Best ') """ cdef int i cdef const TokenC* token cdef int start = -1 cdef int label = 0 for i in range(self.length): token = &self.data[i] if token.ent_iob == 1: assert start != -1 pass elif token.ent_iob == 2: if start != -1: yield Span(self, start, i, label=label) start = -1 label = 0 elif token.ent_iob == 3: if start != -1: yield Span(self, start, i, label=label) start = i label = token.ent_type if start != -1: yield Span(self, start, self.length, label=label) @property def sents(self): """ Yield a list of sentence Span objects, calculated from the dependency parse. """ cdef int i start = 0 for i in range(1, self.length): if self.data[i].sent_start: yield Span(self, start, i) start = i yield Span(self, start, self.length) cdef int push_back(self, LexemeOrToken lex_or_tok, bint has_space) except -1: if self.length == self.max_length: self._realloc(self.length * 2) cdef TokenC* t = &self.data[self.length] if LexemeOrToken is TokenC_ptr: t[0] = lex_or_tok[0] else: t.lex = lex_or_tok if self.length == 0: t.idx = 0 else: t.idx = (t-1).idx + (t-1).lex.length + (t-1).spacy t.spacy = has_space self.length += 1 self._py_tokens.append(None) return t.idx + t.lex.length + t.spacy @cython.boundscheck(False) cpdef np.ndarray to_array(self, object py_attr_ids): """Given a list of M attribute IDs, export the tokens to a numpy ndarray of shape N*M, where N is the length of the sentence. Arguments: attr_ids (list[int]): A list of attribute ID ints. Returns: feat_array (numpy.ndarray[long, ndim=2]): A feature matrix, with one row per word, and one column per attribute indicated in the input attr_ids. """ cdef int i, j cdef attr_id_t feature cdef np.ndarray[attr_t, ndim=2] output # Make an array from the attributes --- otherwise our inner loop is Python # dict iteration. cdef np.ndarray[attr_t, ndim=1] attr_ids = numpy.asarray(py_attr_ids, dtype=numpy.int32) output = numpy.ndarray(shape=(self.length, len(attr_ids)), dtype=numpy.int32) for i in range(self.length): for j, feature in enumerate(attr_ids): output[i, j] = get_token_attr(&self.data[i], feature) return output def count_by(self, attr_id_t attr_id, exclude=None, PreshCounter counts=None): """Produce a dict of {attribute (int): count (ints)} frequencies, keyed by the values of the given attribute ID. >>> from spacy.en import English, attrs >>> nlp = English() >>> tokens = nlp(u'apple apple orange banana') >>> tokens.count_by(attrs.ORTH) {12800L: 1, 11880L: 2, 7561L: 1} >>> tokens.to_array([attrs.ORTH]) array([[11880], [11880], [ 7561], [12800]]) """ cdef int i cdef attr_t attr cdef size_t count if counts is None: counts = PreshCounter(self.length) output_dict = True else: output_dict = False # Take this check out of the loop, for a bit of extra speed if exclude is None: for i in range(self.length): attr = get_token_attr(&self.data[i], attr_id) counts.inc(attr, 1) else: for i in range(self.length): if not exclude(self[i]): attr = get_token_attr(&self.data[i], attr_id) counts.inc(attr, 1) if output_dict: return dict(counts) def _realloc(self, new_size): self.max_length = new_size n = new_size + (PADDING * 2) # What we're storing is a "padded" array. We've jumped forward PADDING # places, and are storing the pointer to that. This way, we can access # words out-of-bounds, and get out-of-bounds markers. # Now that we want to realloc, we need the address of the true start, # so we jump the pointer back PADDING places. cdef TokenC* data_start = self.data - PADDING data_start = self.mem.realloc(data_start, n * sizeof(TokenC)) self.data = data_start + PADDING cdef int i for i in range(self.length, self.max_length + PADDING): self.data[i].lex = &EMPTY_LEXEME cdef int set_parse(self, const TokenC* parsed) except -1: # TODO: This method is fairly misleading atm. It's used by Parser # to actually apply the parse calculated. Need to rethink this. # Probably we should use from_array? self.is_parsed = True for i in range(self.length): self.data[i] = parsed[i] def from_array(self, attrs, array): cdef int i, col cdef attr_id_t attr_id cdef TokenC* tokens = self.data cdef int length = len(array) for col, attr_id in enumerate(attrs): values = array[:, col] if attr_id == HEAD: # TODO: Set left and right children for i in range(length): tokens[i].head = values[i] elif attr_id == TAG: for i in range(length): tokens[i].tag = values[i] elif attr_id == DEP: for i in range(length): tokens[i].dep = values[i] elif attr_id == ENT_IOB: for i in range(length): tokens[i].ent_iob = values[i] elif attr_id == ENT_TYPE: for i in range(length): tokens[i].ent_type = values[i] return self def to_bytes(self): bits = self.vocab.packer.pack(self) return struct.pack('I', len(bits)) + bits.as_bytes() def from_bytes(self, data): bits = BitArray(data) self.vocab.packer.unpack_into(bits, self) return self @staticmethod def read_bytes(file_): keep_reading = True while keep_reading: try: n_bits_str = file_.read(4) if len(n_bits_str) < 4: break n_bits = struct.unpack('I', n_bits_str)[0] n_bytes = n_bits // 8 + bool(n_bits % 8) data = file_.read(n_bytes) except StopIteration: keep_reading = False yield data # This function is terrible --- need to fix this. def merge(self, int start_idx, int end_idx, unicode tag, unicode lemma, unicode ent_type): """Merge a multi-word expression into a single token. Currently experimental; API is likely to change.""" cdef int i cdef int start = -1 cdef int end = -1 for i in range(self.length): if self.data[i].idx == start_idx: start = i if (self.data[i].idx + self.data[i].lex.length) == end_idx: if start == -1: return None end = i + 1 break else: return None cdef unicode string = self.string # Get LexemeC for newly merged token new_orth = string[start_idx:end_idx] cdef const LexemeC* lex = self.vocab.get(self.mem, new_orth) # House the new merged token where it starts cdef TokenC* token = &self.data[start] # Update fields token.lex = lex # What to do about morphology?? # TODO: token.morph = ??? token.tag = self.vocab.strings[tag] token.lemma = self.vocab.strings[lemma] if ent_type == 'O': token.ent_iob = 2 token.ent_type = 0 else: token.ent_iob = 3 token.ent_type = self.vocab.strings[ent_type] # Fix dependencies # Begin by setting all the head indices to absolute token positions # This is easier to work with for now than the offsets for i in range(self.length): self.data[i].head += i # Find the head of the merged token, and its dep relation outer_heads = {} for i in range(start, end): head_idx = self.data[i].head if head_idx == i or head_idx < start or head_idx >= end: # Don't consider "heads" which are actually dominated by a word # in the region we're merging gp = head_idx while self.data[gp].head != gp: if start <= gp < end: break gp = self.data[gp].head else: # If we have multiple words attaching to the same head, # but with different dep labels, we're preferring the last # occurring dep label. Shrug. What else could we do, I guess? outer_heads[head_idx] = self.data[i].dep token.head, token.dep = max(outer_heads.items()) # Adjust deps before shrinking tokens # Tokens which point into the merged token should now point to it # Subtract the offset from all tokens which point to >= end offset = (end - start) - 1 for i in range(self.length): head_idx = self.data[i].head if start <= head_idx < end: self.data[i].head = start elif head_idx >= end: self.data[i].head -= offset # TODO: Fix left and right deps # Now compress the token array for i in range(end, self.length): self.data[i - offset] = self.data[i] for i in range(self.length - offset, self.length): memset(&self.data[i], 0, sizeof(TokenC)) self.data[i].lex = &EMPTY_LEXEME self.length -= offset for i in range(self.length): # ...And, set heads back to a relative position self.data[i].head -= i # Return the merged Python object return self[start]