from __future__ import unicode_literals import numpy import msgpack import gzip import copyreg from thinc.neural.ops import NumpyOps from ..attrs import SPACY, ORTH class Binder(object): '''Serialize analyses from a collection of doc objects.''' def __init__(self, attrs=None): '''Create a Binder object, to hold serialized annotations. attrs (list): List of attributes to serialize. 'orth' and 'spacy' are always serialized, so they're not required. Defaults to None. ''' attrs = attrs or [] self.attrs = list(attrs) # Ensure ORTH is always attrs[0] if ORTH in self.attrs: self.attrs.pop(ORTH) if SPACY in self.attrs: self.attrs.pop(SPACY) self.attrs.insert(0, ORTH) self.tokens = [] self.spaces = [] self.strings = set() def add(self, doc): '''Add a doc's annotations to the binder for serialization.''' array = doc.to_array(self.attrs) if len(array.shape) == 1: array = array.reshape((array.shape[0], 1)) self.tokens.append(array) spaces = doc.to_array(SPACY) assert array.shape[0] == spaces.shape[0] spaces = spaces.reshape((spaces.shape[0], 1)) self.spaces.append(numpy.asarray(spaces, dtype=bool)) self.strings.update(w.text for w in doc) def get_docs(self, vocab): '''Recover Doc objects from the annotations, using the given vocab.''' attrs = self.attrs for string in self.strings: vocab[string] orth_col = self.attrs.index(ORTH) for tokens, spaces in zip(self.tokens, self.spaces): words = [vocab.strings[orth] for orth in tokens[:, orth_col]] doc = Doc(vocab, words=words, spaces=spaces) doc = doc.from_array(self.attrs, tokens) yield doc def merge(self, other): '''Extend the annotations of this binder with the annotations from another.''' assert self.attrs == other.attrs self.tokens.extend(other.tokens) self.spaces.extend(other.spaces) self.strings.update(other.strings) def to_bytes(self): '''Serialize the binder's annotations into a byte string.''' for tokens in self.tokens: assert len(tokens.shape) == 2, tokens.shape lengths = [len(tokens) for tokens in self.tokens] msg = { 'attrs': self.attrs, 'tokens': numpy.vstack(self.tokens).tobytes('C'), 'spaces': numpy.vstack(self.spaces).tobytes('C'), 'lengths': numpy.asarray(lengths, dtype='int32').tobytes('C'), 'strings': list(self.strings) } return gzip.compress(msgpack.dumps(msg)) def from_bytes(self, string): '''Deserialize the binder's annotations from a byte string.''' msg = msgpack.loads(gzip.decompress(string)) self.attrs = msg['attrs'] self.strings = set(msg['strings']) lengths = numpy.fromstring(msg['lengths'], dtype='int32') flat_spaces = numpy.fromstring(msg['spaces'], dtype=bool) flat_tokens = numpy.fromstring(msg['tokens'], dtype='uint64') shape = (flat_tokens.size // len(self.attrs), len(self.attrs)) flat_tokens = flat_tokens.reshape(shape) flat_spaces = flat_spaces.reshape((flat_spaces.size, 1)) self.tokens = NumpyOps().unflatten(flat_tokens, lengths) self.spaces = NumpyOps().unflatten(flat_spaces, lengths) for tokens in self.tokens: assert len(tokens.shape) == 2, tokens.shape return self def merge_bytes(binder_strings): '''Concatenate multiple serialized binders into one byte string.''' output = None for byte_string in binder_strings: binder = Binder().from_bytes(byte_string) if output is None: output = binder else: output.merge(binder) return output.to_bytes() def pickle_binder(binder): return (unpickle_binder, (binder.to_bytes(),)) def unpickle_binder(byte_string): return Binder().from_bytes(byte_string) copy_reg.pickle(Binder, pickle_binder, unpickle_binder)