from random import shuffle from examples.pipeline.wiki_entity_linking import kb_creator import numpy as np from spacy._ml import zero_init, create_default_optimizer from spacy.cli.pretrain import get_cossim_loss from thinc.v2v import Model from thinc.api import chain from thinc.neural._classes.affine import Affine class EntityEncoder: INPUT_DIM = 300 # dimension of pre-trained vectors DESC_WIDTH = 64 DROP = 0 EPOCHS = 5 STOP_THRESHOLD = 0.1 BATCH_SIZE = 1000 def __init__(self, kb, nlp): self.nlp = nlp self.kb = kb def run(self, entity_descr_output): id_to_descr = kb_creator._get_id_to_description(entity_descr_output) processed, loss = self._train_model(entity_descr_output, id_to_descr) print("Trained on", processed, "entities across", self.EPOCHS, "epochs") print("Final loss:", loss) print() # TODO: apply and write to file afterwards ! # self._apply_encoder(id_to_descr) self._test_encoder() def _train_model(self, entity_descr_output, id_to_descr): # TODO: when loss gets too low, a 'mean of empty slice' warning is thrown by numpy self._build_network(self.INPUT_DIM, self.DESC_WIDTH) processed = 0 loss = 1 for i in range(self.EPOCHS): entity_keys = list(id_to_descr.keys()) shuffle(entity_keys) batch_nr = 0 start = 0 stop = min(self.BATCH_SIZE, len(entity_keys)) while loss > self.STOP_THRESHOLD and start < len(entity_keys): batch = [] for e in entity_keys[start:stop]: descr = id_to_descr[e] doc = self.nlp(descr) doc_vector = self._get_doc_embedding(doc) batch.append(doc_vector) loss = self.update(batch) print(i, batch_nr, loss) processed += len(batch) batch_nr += 1 start = start + self.BATCH_SIZE stop = min(stop + self.BATCH_SIZE, len(entity_keys)) return processed, loss def _apply_encoder(self, id_to_descr): for id, descr in id_to_descr.items(): doc = self.nlp(descr) doc_vector = self._get_doc_embedding(doc) encoding = self.encoder(np.asarray([doc_vector])) @staticmethod def _get_doc_embedding(doc): indices = np.zeros((len(doc),), dtype="i") for i, word in enumerate(doc): if word.orth in doc.vocab.vectors.key2row: indices[i] = doc.vocab.vectors.key2row[word.orth] else: indices[i] = 0 word_vectors = doc.vocab.vectors.data[indices] doc_vector = np.mean(word_vectors, axis=0) # TODO: min? max? return doc_vector def _build_network(self, orig_width, hidden_with): with Model.define_operators({">>": chain}): self.encoder = ( Affine(hidden_with, orig_width) ) self.model = self.encoder >> zero_init(Affine(orig_width, hidden_with, drop_factor=0.0)) self.sgd = create_default_optimizer(self.model.ops) def update(self, vectors): predictions, bp_model = self.model.begin_update(np.asarray(vectors), drop=self.DROP) loss, d_scores = self.get_loss(scores=predictions, golds=np.asarray(vectors)) bp_model(d_scores, sgd=self.sgd) return loss / len(vectors) @staticmethod def get_loss(golds, scores): loss, gradients = get_cossim_loss(scores, golds) return loss, gradients def _test_encoder(self): """ Test encoder on some dummy examples """ desc_A1 = "Fictional character in The Simpsons" desc_A2 = "Simpsons - fictional human" desc_A3 = "Fictional character in The Flintstones" desc_A4 = "Politician from the US" A1_doc_vector = np.asarray([self._get_doc_embedding(self.nlp(desc_A1))]) A2_doc_vector = np.asarray([self._get_doc_embedding(self.nlp(desc_A2))]) A3_doc_vector = np.asarray([self._get_doc_embedding(self.nlp(desc_A3))]) A4_doc_vector = np.asarray([self._get_doc_embedding(self.nlp(desc_A4))]) loss_a1_a1, _ = get_cossim_loss(A1_doc_vector, A1_doc_vector) loss_a1_a2, _ = get_cossim_loss(A1_doc_vector, A2_doc_vector) loss_a1_a3, _ = get_cossim_loss(A1_doc_vector, A3_doc_vector) loss_a1_a4, _ = get_cossim_loss(A1_doc_vector, A4_doc_vector) print("sim doc A1 A1", loss_a1_a1) print("sim doc A1 A2", loss_a1_a2) print("sim doc A1 A3", loss_a1_a3) print("sim doc A1 A4", loss_a1_a4) A1_encoded = self.encoder(A1_doc_vector) A2_encoded = self.encoder(A2_doc_vector) A3_encoded = self.encoder(A3_doc_vector) A4_encoded = self.encoder(A4_doc_vector) loss_a1_a1, _ = get_cossim_loss(A1_encoded, A1_encoded) loss_a1_a2, _ = get_cossim_loss(A1_encoded, A2_encoded) loss_a1_a3, _ = get_cossim_loss(A1_encoded, A3_encoded) loss_a1_a4, _ = get_cossim_loss(A1_encoded, A4_encoded) print("sim encoded A1 A1", loss_a1_a1) print("sim encoded A1 A2", loss_a1_a2) print("sim encoded A1 A3", loss_a1_a3) print("sim encoded A1 A4", loss_a1_a4)