from libc.stdio cimport fopen, fclose, fread, fwrite, FILE from libc.string cimport memset from libc.stdint cimport int32_t import bz2 from os import path import codecs import math import json from .lexeme cimport EMPTY_LEXEME from .lexeme cimport set_lex_struct_props from .lexeme cimport Lexeme from .strings cimport hash_string from .orth cimport word_shape from .typedefs cimport attr_t from .cfile cimport CFile from cymem.cymem cimport Address from . import util from .serialize.packer cimport Packer DEF MAX_VEC_SIZE = 100000 cdef float[MAX_VEC_SIZE] EMPTY_VEC memset(EMPTY_VEC, 0, sizeof(EMPTY_VEC)) memset(&EMPTY_LEXEME, 0, sizeof(LexemeC)) EMPTY_LEXEME.repvec = EMPTY_VEC cdef class Vocab: '''A map container for a language's LexemeC structs. ''' def __init__(self, data_dir=None, get_lex_props=None, load_vectors=True, pos_tags=None): self.mem = Pool() self._by_hash = PreshMap() self._by_orth = PreshMap() self.strings = StringStore() self.pos_tags = pos_tags if pos_tags is not None else {} self.lexeme_props_getter = get_lex_props self.repvec_length = 0 self.length = 0 self._add_lex_to_vocab(0, &EMPTY_LEXEME) if data_dir is not None: if not path.exists(data_dir): raise IOError("Directory %s not found -- cannot load Vocab." % data_dir) if data_dir is not None: if not path.isdir(data_dir): raise IOError("Path %s is a file, not a dir -- cannot load Vocab." % data_dir) self.load_lexemes(path.join(data_dir, 'strings.txt'), path.join(data_dir, 'lexemes.bin')) if load_vectors and path.exists(path.join(data_dir, 'vec.bin')): self.repvec_length = self.load_rep_vectors(path.join(data_dir, 'vec.bin')) self._serializer = None self.data_dir = data_dir property serializer: def __get__(self): if self._serializer is None: freqs = [] if self.data_dir is not None: freqs_loc = path.join(self.data_dir, 'serializer.json') if path.exists(freqs_loc): freqs = json.load(open(freqs_loc)) self._serializer = Packer(self, freqs) return self._serializer def __len__(self): """The current number of lexemes stored.""" return self.length cdef const LexemeC* get(self, Pool mem, unicode string) except NULL: '''Get a pointer to a LexemeC from the lexicon, creating a new Lexeme if necessary, using memory acquired from the given pool. If the pool is the lexicon's own memory, the lexeme is saved in the lexicon.''' cdef LexemeC* lex cdef hash_t key = hash_string(string) lex = self._by_hash.get(key) if lex != NULL: return lex cdef bint is_oov = mem is not self.mem if len(string) < 3: mem = self.mem lex = mem.alloc(sizeof(LexemeC), 1) props = self.lexeme_props_getter(string) set_lex_struct_props(lex, props, self.strings, EMPTY_VEC) if is_oov: lex.id = 0 else: self._add_lex_to_vocab(key, lex) return lex cdef const LexemeC* get_by_orth(self, Pool mem, attr_t orth) except NULL: '''Get a pointer to a LexemeC from the lexicon, creating a new Lexeme if necessary, using memory acquired from the given pool. If the pool is the lexicon's own memory, the lexeme is saved in the lexicon.''' cdef LexemeC* lex lex = self._by_orth.get(orth) if lex != NULL: return lex cdef unicode string = self.strings[orth] cdef bint is_oov = mem is not self.mem if len(string) < 3: mem = self.mem lex = mem.alloc(sizeof(LexemeC), 1) props = self.lexeme_props_getter(string) set_lex_struct_props(lex, props, self.strings, EMPTY_VEC) if is_oov: lex.id = 0 else: self._add_lex_to_vocab(hash_string(string), lex) return lex cdef int _add_lex_to_vocab(self, hash_t key, const LexemeC* lex) except -1: self._by_hash.set(key, lex) self._by_orth.set(lex.orth, lex) self.length += 1 def __iter__(self): cdef attr_t orth cdef size_t addr for orth, addr in self._by_orth.items(): yield Lexeme.from_ptr(addr, self.strings, self.repvec_length) def __getitem__(self, id_or_string): '''Retrieve a lexeme, given an int ID or a unicode string. If a previously unseen unicode string is given, a new lexeme is created and stored. Args: id_or_string (int or unicode): The integer ID of a word, or its unicode string. If an int >= Lexicon.size, IndexError is raised. If id_or_string is neither an int nor a unicode string, ValueError is raised. Returns: lexeme (Lexeme): An instance of the Lexeme Python class, with data copied on instantiation. ''' cdef const LexemeC* lexeme cdef attr_t orth if type(id_or_string) == int: orth = id_or_string lexeme = self._by_orth.get(orth) if lexeme == NULL: raise KeyError(id_or_string) assert lexeme.orth == orth, ('%d vs %d' % (lexeme.orth, orth)) elif type(id_or_string) == unicode: lexeme = self.get(self.mem, id_or_string) assert lexeme.orth == self.strings[id_or_string] else: raise ValueError("Vocab unable to map type: " "%s. Maps unicode --> Lexeme or " "int --> Lexeme" % str(type(id_or_string))) return Lexeme.from_ptr(lexeme, self.strings, self.repvec_length) def __setitem__(self, unicode string, dict props): cdef hash_t key = hash_string(string) cdef LexemeC* lex lex = self._by_hash.get(key) if lex == NULL: lex = self.mem.alloc(sizeof(LexemeC), 1) set_lex_struct_props(lex, props, self.strings, EMPTY_VEC) self._add_lex_to_vocab(key, lex) def dump(self, loc): if path.exists(loc): assert not path.isdir(loc) cdef bytes bytes_loc = loc.encode('utf8') if type(loc) == unicode else loc cdef CFile fp = CFile(bytes_loc, 'wb') cdef size_t st cdef size_t addr cdef hash_t key for key, addr in self._by_hash.items(): lexeme = addr fp.write_from(&lexeme.orth, sizeof(lexeme.orth), 1) fp.write_from(lexeme, sizeof(LexemeC), 1) fp.close() def load_lexemes(self, strings_loc, loc): self.strings.load(strings_loc) if not path.exists(loc): raise IOError('LexemeCs file not found at %s' % loc) cdef bytes bytes_loc = loc.encode('utf8') if type(loc) == unicode else loc cdef FILE* fp = fopen(bytes_loc, b'rb') if fp == NULL: raise IOError('lexemes data file present, but cannot open from ' % loc) cdef size_t st cdef LexemeC* lexeme cdef attr_t orth cdef hash_t key cdef unicode py_str i = 0 while True: st = fread(&orth, sizeof(orth), 1, fp) if st != 1: break lexeme = self.mem.alloc(sizeof(LexemeC), 1) # Copies data from the file into the lexeme st = fread(lexeme, sizeof(LexemeC), 1, fp) lexeme.repvec = EMPTY_VEC if st != 1: break if orth != lexeme.orth: # TODO: Improve this error message, pending resolution to Issue #64 raise IOError('Error reading from lexemes.bin. Integrity check fails.') py_str = self.strings[orth] key = hash_string(py_str) self._by_hash.set(key, lexeme) self._by_orth.set(lexeme.orth, lexeme) self.length += 1 i += 1 fclose(fp) def load_rep_vectors(self, loc): cdef CFile file_ = CFile(loc, b'rb') cdef int32_t word_len cdef int32_t vec_len cdef int32_t prev_vec_len = 0 cdef float* vec cdef Address mem cdef attr_t string_id cdef bytes py_word cdef vector[float*] vectors cdef int i cdef Pool tmp_mem = Pool() while True: try: file_.read_into(&word_len, sizeof(word_len), 1) except IOError: break file_.read_into(&vec_len, sizeof(vec_len), 1) if prev_vec_len != 0 and vec_len != prev_vec_len: raise VectorReadError.mismatched_sizes(loc, vec_len, prev_vec_len) if 0 >= vec_len >= MAX_VEC_SIZE: raise VectorReadError.bad_size(loc, vec_len) chars = file_.alloc_read(tmp_mem, word_len, sizeof(char)) vec = file_.alloc_read(self.mem, vec_len, sizeof(float)) string_id = self.strings[chars[:word_len]] while string_id >= vectors.size(): vectors.push_back(EMPTY_VEC) assert vec != NULL vectors[string_id] = vec cdef LexemeC* lex cdef size_t lex_addr for orth, lex_addr in self._by_orth.items(): lex = lex_addr if lex.lower < vectors.size(): lex.repvec = vectors[lex.lower] for i in range(vec_len): lex.l2_norm += (lex.repvec[i] * lex.repvec[i]) lex.l2_norm = math.sqrt(lex.l2_norm) else: lex.repvec = EMPTY_VEC return vec_len def write_binary_vectors(in_loc, out_loc): cdef CFile out_file = CFile(out_loc, 'wb') cdef Address mem cdef int32_t word_len cdef int32_t vec_len cdef char* chars with bz2.BZ2File(in_loc, 'r') as file_: for line in file_: pieces = line.split() word = pieces.pop(0) mem = Address(len(pieces), sizeof(float)) vec = mem.ptr for i, val_str in enumerate(pieces): vec[i] = float(val_str) word_len = len(word) vec_len = len(pieces) out_file.write_from(&word_len, 1, sizeof(word_len)) out_file.write_from(&vec_len, 1, sizeof(vec_len)) chars = word out_file.write_from(chars, len(word), sizeof(char)) out_file.write_from(vec, vec_len, sizeof(float)) class VectorReadError(Exception): @classmethod def mismatched_sizes(cls, loc, prev_size, curr_size): return cls( "Error reading word vectors from %s.\n" "All vectors must be the same size.\n" "Prev size: %d\n" "Curr size: %d" % (loc, prev_size, curr_size)) @classmethod def bad_size(cls, loc, size): return cls( "Error reading word vectors from %s.\n" "Vector size: %d\n" "Max size: %d\n" "Min size: 1\n" % (loc, size, MAX_VEC_SIZE))