# cython: infer_types=True # cython: profile=True cimport numpy as np import numpy from cpython.ref cimport PyObject, Py_INCREF, Py_XDECREF from thinc.extra.search cimport Beam from thinc.extra.search import MaxViolation from thinc.typedefs cimport hash_t, class_t from .transition_system cimport TransitionSystem, Transition from .stateclass cimport StateClass from ..gold cimport GoldParse from ..tokens.doc cimport Doc # These are passed as callbacks to thinc.search.Beam cdef int _transition_state(void* _dest, void* _src, class_t clas, void* _moves) except -1: dest = _dest src = _src moves = _moves dest.clone(src) moves[clas].do(dest.c, moves[clas].label) cdef int _check_final_state(void* _state, void* extra_args) except -1: return (_state).is_final() def _cleanup(Beam beam): for i in range(beam.width): Py_XDECREF(beam._states[i].content) Py_XDECREF(beam._parents[i].content) cdef hash_t _hash_state(void* _state, void* _) except 0: state = _state if state.c.is_final(): return 1 else: return state.c.hash() cdef class ParserBeam(object): cdef public TransitionSystem moves cdef public object states cdef public object golds cdef public object beams def __init__(self, TransitionSystem moves, states, golds, int width=4, float density=0.001): self.moves = moves self.states = states self.golds = golds self.beams = [] cdef Beam beam cdef StateClass state, st for state in states: beam = Beam(self.moves.n_moves, width, density) beam.initialize(self.moves.init_beam_state, state.c.length, state.c._sent) for i in range(beam.width): st = beam.at(i) st.c.offset = state.c.offset self.beams.append(beam) def __dealloc__(self): if self.beams is not None: for beam in self.beams: if beam is not None: _cleanup(beam) @property def is_done(self): return all(b.is_done for b in self.beams) def __getitem__(self, i): return self.beams[i] def __len__(self): return len(self.beams) def advance(self, scores, follow_gold=False): cdef Beam beam for i, beam in enumerate(self.beams): if beam.is_done or not scores[i].size: continue self._set_scores(beam, scores[i]) if self.golds is not None: self._set_costs(beam, self.golds[i], follow_gold=follow_gold) if follow_gold: assert self.golds is not None beam.advance(_transition_state, NULL, self.moves.c) else: beam.advance(_transition_state, _hash_state, self.moves.c) beam.check_done(_check_final_state, NULL) if beam.is_done: for j in range(beam.size): if is_gold(beam.at(j), self.golds[i], self.moves.strings): beam._states[j].loss = 0.0 elif beam._states[j].loss == 0.0: beam._states[j].loss = 1.0 def _set_scores(self, Beam beam, float[:, ::1] scores): cdef float* c_scores = &scores[0, 0] for i in range(beam.size): state = beam.at(i) if not state.is_final(): for j in range(beam.nr_class): beam.scores[i][j] = c_scores[i * beam.nr_class + j] self.moves.set_valid(beam.is_valid[i], state.c) def _set_costs(self, Beam beam, GoldParse gold, int follow_gold=False): for i in range(beam.size): state = beam.at(i) if not state.c.is_final(): self.moves.set_costs(beam.is_valid[i], beam.costs[i], state, gold) if follow_gold: for j in range(beam.nr_class): if beam.costs[i][j] >= 1: beam.is_valid[i][j] = 0 def is_gold(StateClass state, GoldParse gold, strings): predicted = set() truth = set() for i in range(gold.length): if gold.cand_to_gold[i] is None: continue if state.safe_get(i).dep: predicted.add((i, state.H(i), strings[state.safe_get(i).dep])) else: predicted.add((i, state.H(i), 'ROOT')) id_, word, tag, head, dep, ner = gold.orig_annot[gold.cand_to_gold[i]] truth.add((id_, head, dep)) return truth == predicted def get_token_ids(states, int n_tokens): cdef StateClass state cdef np.ndarray ids = numpy.zeros((len(states), n_tokens), dtype='int32', order='C') c_ids = ids.data for i, state in enumerate(states): if not state.is_final(): state.c.set_context_tokens(c_ids, n_tokens) else: ids[i] = -1 c_ids += ids.shape[1] return ids nr_update = 0 def update_beam(TransitionSystem moves, int nr_feature, int max_steps, states, tokvecs, golds, state2vec, vec2scores, drop=0., sgd=None, losses=None, int width=4, float density=0.001): global nr_update nr_update += 1 pbeam = ParserBeam(moves, states, golds, width=width, density=density) gbeam = ParserBeam(moves, states, golds, width=width, density=0.0) cdef StateClass state beam_maps = [] backprops = [] violns = [MaxViolation() for _ in range(len(states))] for t in range(max_steps): # The beam maps let us find the right row in the flattened scores # arrays for each state. States are identified by (example id, history). # We keep a different beam map for each step (since we'll have a flat # scores array for each step). The beam map will let us take the per-state # losses, and compute the gradient for each (step, state, class). beam_maps.append({}) # Gather all states from the two beams in a list. Some stats may occur # in both beams. To figure out which beam each state belonged to, # we keep two lists of indices, p_indices and g_indices states, p_indices, g_indices = get_states(pbeam, gbeam, beam_maps[-1], nr_update) if not states: break # Now that we have our flat list of states, feed them through the model token_ids = get_token_ids(states, nr_feature) vectors, bp_vectors = state2vec.begin_update(token_ids, drop=drop) scores, bp_scores = vec2scores.begin_update(vectors, drop=drop) # Store the callbacks for the backward pass backprops.append((token_ids, bp_vectors, bp_scores)) # Unpack the flat scores into lists for the two beams. The indices arrays # tell us which example and state the scores-row refers to. p_scores = [numpy.ascontiguousarray(scores[indices], dtype='f') for indices in p_indices] g_scores = [numpy.ascontiguousarray(scores[indices], dtype='f') for indices in g_indices] # Now advance the states in the beams. The gold beam is contrained to # to follow only gold analyses. pbeam.advance(p_scores) gbeam.advance(g_scores, follow_gold=True) # Track the "maximum violation", to use in the update. for i, violn in enumerate(violns): violn.check_crf(pbeam[i], gbeam[i]) # Only make updates if we have non-gold states histories = [((v.p_hist + v.g_hist) if v.p_hist else []) for v in violns] losses = [((v.p_probs + v.g_probs) if v.p_probs else []) for v in violns] states_d_scores = get_gradient(moves.n_moves, beam_maps, histories, losses) assert len(states_d_scores) == len(backprops), (len(states_d_scores), len(backprops)) return states_d_scores, backprops def get_states(pbeams, gbeams, beam_map, nr_update): seen = {} states = [] p_indices = [] g_indices = [] cdef Beam pbeam, gbeam assert len(pbeams) == len(gbeams) for eg_id, (pbeam, gbeam) in enumerate(zip(pbeams, gbeams)): p_indices.append([]) g_indices.append([]) if pbeam.loss > 0 and pbeam.min_score > gbeam.score: continue for i in range(pbeam.size): state = pbeam.at(i) if not state.is_final(): key = tuple([eg_id] + pbeam.histories[i]) seen[key] = len(states) p_indices[-1].append(len(states)) states.append(state) beam_map.update(seen) for i in range(gbeam.size): state = gbeam.at(i) if not state.is_final(): key = tuple([eg_id] + gbeam.histories[i]) if key in seen: g_indices[-1].append(seen[key]) else: g_indices[-1].append(len(states)) beam_map[key] = len(states) states.append(state) p_idx = [numpy.asarray(idx, dtype='i') for idx in p_indices] g_idx = [numpy.asarray(idx, dtype='i') for idx in g_indices] return states, p_idx, g_idx def get_gradient(nr_class, beam_maps, histories, losses): """ The global model assigns a loss to each parse. The beam scores are additive, so the same gradient is applied to each action in the history. This gives the gradient of a single *action* for a beam state -- so we have "the gradient of loss for taking action i given history H." Histories: Each hitory is a list of actions Each candidate has a history Each beam has multiple candidates Each batch has multiple beams So history is list of lists of lists of ints """ nr_step = len(beam_maps) grads = [] for beam_map in beam_maps: if beam_map: grads.append(numpy.zeros((max(beam_map.values())+1, nr_class), dtype='f')) assert len(histories) == len(losses) for eg_id, hists in enumerate(histories): for loss, hist in zip(losses[eg_id], hists): key = tuple([eg_id]) for j, clas in enumerate(hist): i = beam_maps[j][key] # In step j, at state i action clas # resulted in loss grads[j][i, clas] += loss / len(histories) key = key + tuple([clas]) return grads