spaCy/spacy/ml/models/multi_task.py
Connor Brinton 657af5f91f
🏷 Add Mypy check to CI and ignore all existing Mypy errors (#9167)
* 🚨 Ignore all existing Mypy errors

* 🏗 Add Mypy check to CI

* Add types-mock and types-requests as dev requirements

* Add additional type ignore directives

* Add types packages to dev-only list in reqs test

* Add types-dataclasses for python 3.6

* Add ignore to pretrain

* 🏷 Improve type annotation on `run_command` helper

The `run_command` helper previously declared that it returned an
`Optional[subprocess.CompletedProcess]`, but it isn't actually possible
for the function to return `None`. These changes modify the type
annotation of the `run_command` helper and remove all now-unnecessary
`# type: ignore` directives.

* 🔧 Allow variable type redefinition in limited contexts

These changes modify how Mypy is configured to allow variables to have
their type automatically redefined under certain conditions. The Mypy
documentation contains the following example:

```python
def process(items: List[str]) -> None:
    # 'items' has type List[str]
    items = [item.split() for item in items]
    # 'items' now has type List[List[str]]
    ...
```

This configuration change is especially helpful in reducing the number
of `# type: ignore` directives needed to handle the common pattern of:
* Accepting a filepath as a string
* Overwriting the variable using `filepath = ensure_path(filepath)`

These changes enable redefinition and remove all `# type: ignore`
directives rendered redundant by this change.

* 🏷 Add type annotation to converters mapping

* 🚨 Fix Mypy error in convert CLI argument verification

* 🏷 Improve type annotation on `resolve_dot_names` helper

* 🏷 Add type annotations for `Vocab` attributes `strings` and `vectors`

* 🏷 Add type annotations for more `Vocab` attributes

* 🏷 Add loose type annotation for gold data compilation

* 🏷 Improve `_format_labels` type annotation

* 🏷 Fix `get_lang_class` type annotation

* 🏷 Loosen return type of `Language.evaluate`

* 🏷 Don't accept `Scorer` in `handle_scores_per_type`

* 🏷 Add `string_to_list` overloads

* 🏷 Fix non-Optional command-line options

* 🙈 Ignore redefinition of `wandb_logger` in `loggers.py`

*  Install `typing_extensions` in Python 3.8+

The `typing_extensions` package states that it should be used when
"writing code that must be compatible with multiple Python versions".
Since SpaCy needs to support multiple Python versions, it should be used
when newer `typing` module members are required. One example of this is
`Literal`, which is available starting with Python 3.8.

Previously SpaCy tried to import `Literal` from `typing`, falling back
to `typing_extensions` if the import failed. However, Mypy doesn't seem
to be able to understand what `Literal` means when the initial import
means. Therefore, these changes modify how `compat` imports `Literal` by
always importing it from `typing_extensions`.

These changes also modify how `typing_extensions` is installed, so that
it is a requirement for all Python versions, including those greater
than or equal to 3.8.

* 🏷 Improve type annotation for `Language.pipe`

These changes add a missing overload variant to the type signature of
`Language.pipe`. Additionally, the type signature is enhanced to allow
type checkers to differentiate between the two overload variants based
on the `as_tuple` parameter.

Fixes #8772

*  Don't install `typing-extensions` in Python 3.8+

After more detailed analysis of how to implement Python version-specific
type annotations using SpaCy, it has been determined that by branching
on a comparison against `sys.version_info` can be statically analyzed by
Mypy well enough to enable us to conditionally use
`typing_extensions.Literal`. This means that we no longer need to
install `typing_extensions` for Python versions greater than or equal to
3.8! 🎉

These changes revert previous changes installing `typing-extensions`
regardless of Python version and modify how we import the `Literal` type
to ensure that Mypy treats it properly.

* resolve mypy errors for Strict pydantic types

* refactor code to avoid missing return statement

* fix types of convert CLI command

* avoid list-set confustion in debug_data

* fix typo and formatting

* small fixes to avoid type ignores

* fix types in profile CLI command and make it more efficient

* type fixes in projects CLI

* put one ignore back

* type fixes for render

* fix render types - the sequel

* fix BaseDefault in language definitions

* fix type of noun_chunks iterator - yields tuple instead of span

* fix types in language-specific modules

* 🏷 Expand accepted inputs of `get_string_id`

`get_string_id` accepts either a string (in which case it returns its 
ID) or an ID (in which case it immediately returns the ID). These 
changes extend the type annotation of `get_string_id` to indicate that 
it can accept either strings or IDs.

* 🏷 Handle override types in `combine_score_weights`

The `combine_score_weights` function allows users to pass an `overrides` 
mapping to override data extracted from the `weights` argument. Since it 
allows `Optional` dictionary values, the return value may also include 
`Optional` dictionary values.

These changes update the type annotations for `combine_score_weights` to 
reflect this fact.

* 🏷 Fix tokenizer serialization method signatures in `DummyTokenizer`

* 🏷 Fix redefinition of `wandb_logger`

These changes fix the redefinition of `wandb_logger` by giving a 
separate name to each `WandbLogger` version. For 
backwards-compatibility, `spacy.train` still exports `wandb_logger_v3` 
as `wandb_logger` for now.

* more fixes for typing in language

* type fixes in model definitions

* 🏷 Annotate `_RandomWords.probs` as `NDArray`

* 🏷 Annotate `tok2vec` layers to help Mypy

* 🐛 Fix `_RandomWords.probs` type annotations for Python 3.6

Also remove an import that I forgot to move to the top of the module 😅

* more fixes for matchers and other pipeline components

* quick fix for entity linker

* fixing types for spancat, textcat, etc

* bugfix for tok2vec

* type annotations for scorer

* add runtime_checkable for Protocol

* type and import fixes in tests

* mypy fixes for training utilities

* few fixes in util

* fix import

* 🐵 Remove unused `# type: ignore` directives

* 🏷 Annotate `Language._components`

* 🏷 Annotate `spacy.pipeline.Pipe`

* add doc as property to span.pyi

* small fixes and cleanup

* explicit type annotations instead of via comment

Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com>
Co-authored-by: svlandeg <sofie.vanlandeghem@gmail.com>
Co-authored-by: svlandeg <svlandeg@github.com>
2021-10-14 15:21:40 +02:00

252 lines
8.6 KiB
Python

from typing import Any, Optional, Iterable, Tuple, List, Callable, TYPE_CHECKING, cast
from thinc.types import Floats2d
from thinc.api import chain, Maxout, LayerNorm, Softmax, Linear, zero_init, Model
from thinc.api import MultiSoftmax, list2array
from thinc.api import to_categorical, CosineDistance, L2Distance
from thinc.loss import Loss
from ...util import registry, OOV_RANK
from ...errors import Errors
from ...attrs import ID
import numpy
from functools import partial
if TYPE_CHECKING:
# This lets us add type hints for mypy etc. without causing circular imports
from ...vocab import Vocab # noqa: F401
from ...tokens.doc import Doc # noqa: F401
@registry.architectures("spacy.PretrainVectors.v1")
def create_pretrain_vectors(
maxout_pieces: int, hidden_size: int, loss: str
) -> Callable[["Vocab", Model], Model]:
def create_vectors_objective(vocab: "Vocab", tok2vec: Model) -> Model:
if vocab.vectors.data.shape[1] == 0:
raise ValueError(Errors.E875)
model = build_cloze_multi_task_model(
vocab, tok2vec, hidden_size=hidden_size, maxout_pieces=maxout_pieces
)
model.attrs["loss"] = create_vectors_loss()
return model
def create_vectors_loss() -> Callable:
distance: Loss
if loss == "cosine":
distance = CosineDistance(normalize=True, ignore_zeros=True)
return partial(get_vectors_loss, distance=distance)
elif loss == "L2":
distance = L2Distance(normalize=True)
return partial(get_vectors_loss, distance=distance)
else:
raise ValueError(Errors.E906.format(found=loss, supported="'cosine', 'L2'"))
return create_vectors_objective
@registry.architectures("spacy.PretrainCharacters.v1")
def create_pretrain_characters(
maxout_pieces: int, hidden_size: int, n_characters: int
) -> Callable[["Vocab", Model], Model]:
def create_characters_objective(vocab: "Vocab", tok2vec: Model) -> Model:
model = build_cloze_characters_multi_task_model(
vocab,
tok2vec,
hidden_size=hidden_size,
maxout_pieces=maxout_pieces,
nr_char=n_characters,
)
model.attrs["loss"] = partial(get_characters_loss, nr_char=n_characters)
return model
return create_characters_objective
def get_vectors_loss(ops, docs, prediction, distance):
"""Compute a loss based on a distance between the documents' vectors and
the prediction.
"""
# The simplest way to implement this would be to vstack the
# token.vector values, but that's a bit inefficient, especially on GPU.
# Instead we fetch the index into the vectors table for each of our tokens,
# and look them up all at once. This prevents data copying.
ids = ops.flatten([doc.to_array(ID).ravel() for doc in docs])
target = docs[0].vocab.vectors.data[ids]
target[ids == OOV_RANK] = 0
d_target, loss = distance(prediction, target)
return loss, d_target
def get_characters_loss(ops, docs, prediction, nr_char):
"""Compute a loss based on a number of characters predicted from the docs."""
target_ids = numpy.vstack([doc.to_utf8_array(nr_char=nr_char) for doc in docs])
target_ids = target_ids.reshape((-1,))
target = ops.asarray(to_categorical(target_ids, n_classes=256), dtype="f")
target = target.reshape((-1, 256 * nr_char))
diff = prediction - target
loss = (diff ** 2).sum()
d_target = diff / float(prediction.shape[0])
return loss, d_target
def build_multi_task_model(
tok2vec: Model,
maxout_pieces: int,
token_vector_width: int,
nO: Optional[int] = None,
) -> Model:
softmax = Softmax(nO=nO, nI=token_vector_width * 2)
model = chain(
tok2vec,
Maxout(
nO=token_vector_width * 2,
nI=token_vector_width,
nP=maxout_pieces,
dropout=0.0,
),
LayerNorm(token_vector_width * 2),
softmax,
)
model.set_ref("tok2vec", tok2vec)
model.set_ref("output_layer", softmax)
return model
def build_cloze_multi_task_model(
vocab: "Vocab", tok2vec: Model, maxout_pieces: int, hidden_size: int
) -> Model:
nO = vocab.vectors.data.shape[1]
output_layer = chain(
cast(Model[List["Floats2d"], Floats2d], list2array()),
Maxout(
nO=hidden_size,
nI=tok2vec.get_dim("nO"),
nP=maxout_pieces,
normalize=True,
dropout=0.0,
),
Linear(nO=nO, nI=hidden_size, init_W=zero_init),
)
model = chain(tok2vec, output_layer)
model = build_masked_language_model(vocab, model)
model.set_ref("tok2vec", tok2vec)
model.set_ref("output_layer", output_layer)
return model
def build_cloze_characters_multi_task_model(
vocab: "Vocab", tok2vec: Model, maxout_pieces: int, hidden_size: int, nr_char: int
) -> Model:
output_layer = chain(
cast(Model[List["Floats2d"], Floats2d], list2array()),
Maxout(nO=hidden_size, nP=maxout_pieces),
LayerNorm(nI=hidden_size),
MultiSoftmax([256] * nr_char, nI=hidden_size), # type: ignore[arg-type]
)
model = build_masked_language_model(vocab, chain(tok2vec, output_layer))
model.set_ref("tok2vec", tok2vec)
model.set_ref("output_layer", output_layer)
return model
def build_masked_language_model(
vocab: "Vocab", wrapped_model: Model, mask_prob: float = 0.15
) -> Model:
"""Convert a model into a BERT-style masked language model"""
random_words = _RandomWords(vocab)
def mlm_forward(model, docs, is_train):
mask, docs = _apply_mask(docs, random_words, mask_prob=mask_prob)
mask = model.ops.asarray(mask).reshape((mask.shape[0], 1))
output, backprop = model.layers[0](docs, is_train)
def mlm_backward(d_output):
d_output *= 1 - mask
return backprop(d_output)
return output, mlm_backward
def mlm_initialize(model: Model, X=None, Y=None):
wrapped = model.layers[0]
wrapped.initialize(X=X, Y=Y)
for dim in wrapped.dim_names:
if wrapped.has_dim(dim):
model.set_dim(dim, wrapped.get_dim(dim))
mlm_model: Model = Model(
"masked-language-model",
mlm_forward,
layers=[wrapped_model],
init=mlm_initialize,
refs={"wrapped": wrapped_model},
dims={dim: None for dim in wrapped_model.dim_names},
)
mlm_model.set_ref("wrapped", wrapped_model)
return mlm_model
class _RandomWords:
def __init__(self, vocab: "Vocab") -> None:
# Extract lexeme representations
self.words = [lex.text for lex in vocab if lex.prob != 0.0]
self.words = self.words[:10000]
# Compute normalized lexeme probabilities
probs = [lex.prob for lex in vocab if lex.prob != 0.0]
probs = probs[:10000]
probs: numpy.ndarray = numpy.exp(numpy.array(probs, dtype="f"))
probs /= probs.sum()
self.probs = probs
# Initialize cache
self._cache: List[int] = []
def next(self) -> str:
if not self._cache:
self._cache.extend(
numpy.random.choice(len(self.words), 10000, p=self.probs)
)
index = self._cache.pop()
return self.words[index]
def _apply_mask(
docs: Iterable["Doc"], random_words: _RandomWords, mask_prob: float = 0.15
) -> Tuple[numpy.ndarray, List["Doc"]]:
# This needs to be here to avoid circular imports
from ...tokens.doc import Doc # noqa: F811
N = sum(len(doc) for doc in docs)
mask = numpy.random.uniform(0.0, 1.0, (N,))
mask = mask >= mask_prob
i = 0
masked_docs = []
for doc in docs:
words = []
for token in doc:
if not mask[i]:
word = _replace_word(token.text, random_words)
else:
word = token.text
words.append(word)
i += 1
spaces = [bool(w.whitespace_) for w in doc]
# NB: If you change this implementation to instead modify
# the docs in place, take care that the IDs reflect the original
# words. Currently we use the original docs to make the vectors
# for the target, so we don't lose the original tokens. But if
# you modified the docs in place here, you would.
masked_docs.append(Doc(doc.vocab, words=words, spaces=spaces))
return mask, masked_docs
def _replace_word(word: str, random_words: _RandomWords, mask: str = "[MASK]") -> str:
roll = numpy.random.random()
if roll < 0.8:
return mask
elif roll < 0.9:
return random_words.next()
else:
return word