Raphael Mitsch 304b9331e6 Modify EL batching to doc-wise streaming approach (#12367) ... * Convert Candidate from Cython to Python class. * Format. * Fix .entity_ typo in _add_activations() usage. * Change type for mentions to look up entity candidates for to SpanGroup from Iterable[Span]. * Update docs. * Update spacy/kb/candidate.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update doc string of BaseCandidate.__init__(). * Update spacy/kb/candidate.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Rename Candidate to InMemoryCandidate, BaseCandidate to Candidate. * Adjust Candidate to support and mandate numerical entity IDs. * Format. * Fix docstring and docs. * Update website/docs/api/kb.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Rename alias -> mention. * Refactor Candidate attribute names. Update docs and tests accordingly. * Refacor Candidate attributes and their usage. * Format. * Fix mypy error. * Update error code in line with v4 convention. * Modify EL batching system. * Update leftover get_candidates() mention in docs. * Format docs. * Format. * Update spacy/kb/candidate.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Updated error code. * Simplify interface for int/str representations. * Update website/docs/api/kb.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Rename 'alias' to 'mention'. * Port Candidate and InMemoryCandidate to Cython. * Remove redundant entry in setup.py. * Add abstract class check. * Drop storing mention. * Update spacy/kb/candidate.pxd Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Fix entity_id refactoring problems in docstrings. * Drop unused InMemoryCandidate._entity_hash. * Update docstrings. * Move attributes out of Candidate. * Partially fix alias/mention terminology usage. Convert Candidate to interface. * Remove prior_prob from supported properties in Candidate. Introduce KnowledgeBase.supports_prior_probs(). * Update docstrings related to prior_prob. * Update alias/mention usage in doc(strings). * Update spacy/ml/models/entity_linker.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/models/entity_linker.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Mention -> alias renaming. Drop Candidate.mentions(). Drop InMemoryLookupKB.get_alias_candidates() from docs. * Update docstrings. * Fix InMemoryCandidate attribute names. * Update spacy/kb/kb.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/ml/models/entity_linker.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update W401 test. * Update spacy/errors.py Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/kb/kb.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Use Candidate output type for toy generators in the test suite to mimick best practices * fix docs * fix import * Fix merge leftovers. * Update spacy/kb/kb.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/kb/kb.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update website/docs/api/kb.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update website/docs/api/entitylinker.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update spacy/kb/kb_in_memory.pyx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update website/docs/api/inmemorylookupkb.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update get_candidates() docstring. * Reformat imports in entity_linker.py. * Drop valid_ent_idx_per_doc. * Update docs. * Format. * Simplify doc loop in predict(). * Remove E1044 comment. * Fix merge errors. * Format. * Format. * Format. * Fix merge error & tests. * Format. * Apply suggestions from code review Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com> * Use type alias. * isort. * isort. * Lint. * Add typedefs.pyx. * Fix typedef import. * Fix type aliases. * Format. * Update docstring and type usage. * Add info on get_candidates(), get_candidates_batched(). * Readd get_candidates info to v3 changelog. * Update website/docs/api/entitylinker.mdx Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Update factory functions for backwards compatibility. * Format. * Ignore mypy error. * Fix mypy error. * Format. * Add test for multiple docs with multiple entities. --------- Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com> Co-authored-by: svlandeg <svlandeg@github.com>		2024-04-09 11:39:18 +02:00
..
api	Modify EL batching to doc-wise streaming approach (#12367)	2024-04-09 11:39:18 +02:00
images	Inline displaCy visualizations in docs (#13050) [ci skip]	2023-10-06 14:22:43 +02:00
models	Docs: update trf_data examples and pipeline design info (#13164)	2023-12-04 15:15:54 +01:00
usage	Merge remote-tracking branch 'upstream/master' into maintenance/v4-merge-master-20240119	2024-01-24 09:09:01 +01:00
styleguide.mdx	Website migration from Gatsby to Next (#12058)	2023-01-11 17:30:07 +01:00