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			373 lines
		
	
	
		
			19 KiB
		
	
	
	
		
			Plaintext
		
	
	
	
	
	
| ---
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| title: SpanFinder
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| tag: class,experimental
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| source: spacy/pipeline/span_finder.py
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| version: 3.6
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| teaser:
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|   'Pipeline component for identifying potentially overlapping spans of text'
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| api_base_class: /api/pipe
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| api_string_name: span_finder
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| api_trainable: true
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| ---
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| 
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| The span finder identifies potentially overlapping, unlabeled spans. It
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| identifies tokens that start or end spans and annotates unlabeled spans between
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| starts and ends, with optional filters for min and max span length. It is
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| intended for use in combination with a component like
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| [`SpanCategorizer`](/api/spancategorizer) that may further filter or label the
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| spans. Predicted spans will be saved in a [`SpanGroup`](/api/spangroup) on the
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| doc under `doc.spans[spans_key]`, where `spans_key` is a component config
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| setting.
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| 
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| ## Assigned Attributes {id="assigned-attributes"}
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| 
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| Predictions will be saved to `Doc.spans[spans_key]` as a
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| [`SpanGroup`](/api/spangroup).
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| 
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| `spans_key` defaults to `"sc"`, but can be passed as a parameter. The
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| `span_finder` component will overwrite any existing spans under the spans key
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| `doc.spans[spans_key]`.
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| 
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| | Location               | Value                              |
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| | ---------------------- | ---------------------------------- |
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| | `Doc.spans[spans_key]` | The unlabeled spans. ~~SpanGroup~~ |
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| 
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| ## Config and implementation {id="config"}
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| 
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| The default config is defined by the pipeline component factory and describes
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| how the component should be configured. You can override its settings via the
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| `config` argument on [`nlp.add_pipe`](/api/language#add_pipe) or in your
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| [`config.cfg` for training](/usage/training#config). See the
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| [model architectures](/api/architectures) documentation for details on the
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| architectures and their arguments and hyperparameters.
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| 
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| > #### Example
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| >
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| > ```python
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| > from spacy.pipeline.span_finder import DEFAULT_SPAN_FINDER_MODEL
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| > config = {
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| >     "threshold": 0.5,
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| >     "spans_key": "my_spans",
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| >     "max_length": None,
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| >     "min_length": None,
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| >     "model": DEFAULT_SPAN_FINDER_MODEL,
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| > }
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| > nlp.add_pipe("span_finder", config=config)
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| > ```
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| 
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| | Setting      | Description                                                                                                                                                                                                            |
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| | ------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| | `model`      | A model instance that is given a list of documents and predicts a probability for each token. ~~Model[List[Doc], Floats2d]~~                                                                                           |
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| | `spans_key`  | Key of the [`Doc.spans`](/api/doc#spans) dict to save the spans under. During initialization and training, the component will look for spans on the reference document under the same key. Defaults to `"sc"`. ~~str~~ |
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| | `threshold`  | Minimum probability to consider a prediction positive. Defaults to `0.5`. ~~float~~                                                                                                                                    |
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| | `max_length` | Maximum length of the produced spans, defaults to `25`. ~~Optional[int]~~                                                                                                                                              |
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| | `min_length` | Minimum length of the produced spans, defaults to `None` meaning shortest span length is 1. ~~Optional[int]~~                                                                                                          |
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| | `scorer`     | The scoring method. Defaults to [`Scorer.score_spans`](/api/scorer#score_spans) for `Doc.spans[spans_key]` with overlapping spans allowed. ~~Optional[Callable]~~                                                      |
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| 
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| ```python
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| %%GITHUB_SPACY/spacy/pipeline/span_finder.py
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| ```
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| 
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| ## SpanFinder.\_\_init\_\_ {id="init",tag="method"}
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| 
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| > #### Example
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| >
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| > ```python
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| > # Construction via add_pipe with default model
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| > span_finder = nlp.add_pipe("span_finder")
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| >
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| > # Construction via add_pipe with custom model
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| > config = {"model": {"@architectures": "my_span_finder"}}
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| > span_finder = nlp.add_pipe("span_finder", config=config)
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| >
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| > # Construction from class
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| > from spacy.pipeline import SpanFinder
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| > span_finder = SpanFinder(nlp.vocab, model)
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| > ```
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| 
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| Create a new pipeline instance. In your application, you would normally use a
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| shortcut for this and instantiate the component using its string name and
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| [`nlp.add_pipe`](/api/language#create_pipe).
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| 
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| | Name           | Description                                                                                                                                                                                                            |
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| | -------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| | `vocab`        | The shared vocabulary. ~~Vocab~~                                                                                                                                                                                       |
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| | `model`        | A model instance that is given a list of documents and predicts a probability for each token. ~~Model[List[Doc], Floats2d]~~                                                                                           |
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| | `name`         | String name of the component instance. Used to add entries to the `losses` during training. ~~str~~                                                                                                                    |
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| | _keyword-only_ |                                                                                                                                                                                                                        |
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| | `spans_key`    | Key of the [`Doc.spans`](/api/doc#spans) dict to save the spans under. During initialization and training, the component will look for spans on the reference document under the same key. Defaults to `"sc"`. ~~str~~ |
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| | `threshold`    | Minimum probability to consider a prediction positive. Defaults to `0.5`. ~~float~~                                                                                                                                    |
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| | `max_length`   | Maximum length of the produced spans, defaults to `None` meaning unlimited length. ~~Optional[int]~~                                                                                                                   |
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| | `min_length`   | Minimum length of the produced spans, defaults to `None` meaning shortest span length is 1. ~~Optional[int]~~                                                                                                          |
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| | `scorer`       | The scoring method. Defaults to [`Scorer.score_spans`](/api/scorer#score_spans) for `Doc.spans[spans_key]` with overlapping spans allowed. ~~Optional[Callable]~~                                                      |
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| 
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| ## SpanFinder.\_\_call\_\_ {id="call",tag="method"}
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| 
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| Apply the pipe to one document. The document is modified in place, and returned.
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| This usually happens under the hood when the `nlp` object is called on a text
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| and all pipeline components are applied to the `Doc` in order. Both
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| [`__call__`](/api/spanfinder#call) and [`pipe`](/api/spanfinder#pipe) delegate
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| to the [`predict`](/api/spanfinder#predict) and
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| [`set_annotations`](/api/spanfinder#set_annotations) methods.
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| 
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| > #### Example
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| >
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| > ```python
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| > doc = nlp("This is a sentence.")
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| > span_finder = nlp.add_pipe("span_finder")
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| > # This usually happens under the hood
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| > processed = span_finder(doc)
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| > ```
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| 
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| | Name        | Description                      |
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| | ----------- | -------------------------------- |
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| | `doc`       | The document to process. ~~Doc~~ |
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| | **RETURNS** | The processed document. ~~Doc~~  |
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| 
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| ## SpanFinder.pipe {id="pipe",tag="method"}
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| 
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| Apply the pipe to a stream of documents. This usually happens under the hood
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| when the `nlp` object is called on a text and all pipeline components are
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| applied to the `Doc` in order. Both [`__call__`](/api/spanfinder#call) and
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| [`pipe`](/api/spanfinder#pipe) delegate to the
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| [`predict`](/api/spanfinder#predict) and
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| [`set_annotations`](/api/spanfinder#set_annotations) methods.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > for doc in span_finder.pipe(docs, batch_size=50):
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| >     pass
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| > ```
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| 
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| | Name           | Description                                                   |
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| | -------------- | ------------------------------------------------------------- |
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| | `stream`       | A stream of documents. ~~Iterable[Doc]~~                      |
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| | _keyword-only_ |                                                               |
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| | `batch_size`   | The number of documents to buffer. Defaults to `128`. ~~int~~ |
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| | **YIELDS**     | The processed documents in order. ~~Doc~~                     |
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| 
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| ## SpanFinder.initialize {id="initialize",tag="method"}
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| 
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| Initialize the component for training. `get_examples` should be a function that
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| returns an iterable of [`Example`](/api/example) objects. **At least one example
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| should be supplied.** The data examples are used to **initialize the model** of
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| the component and can either be the full training data or a representative
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| sample. Initialization includes validating the network and
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| [inferring missing shapes](https://thinc.ai/docs/usage-models#validation) This
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| method is typically called by [`Language.initialize`](/api/language#initialize)
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| and lets you customize arguments it receives via the
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| [`[initialize.components]`](/api/data-formats#config-initialize) block in the
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| config.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > span_finder.initialize(lambda: examples, nlp=nlp)
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| > ```
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| 
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| | Name           | Description                                                                                                                                                                |
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| | -------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| | `get_examples` | Function that returns gold-standard annotations in the form of [`Example`](/api/example) objects. Must contain at least one `Example`. ~~Callable[[], Iterable[Example]]~~ |
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| | _keyword-only_ |                                                                                                                                                                            |
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| | `nlp`          | The current `nlp` object. Defaults to `None`. ~~Optional[Language]~~                                                                                                       |
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| 
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| ## SpanFinder.predict {id="predict",tag="method"}
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| 
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| Apply the component's model to a batch of [`Doc`](/api/doc) objects without
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| modifying them.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > scores = span_finder.predict([doc1, doc2])
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| > ```
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| 
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| | Name        | Description                                 |
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| | ----------- | ------------------------------------------- |
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| | `docs`      | The documents to predict. ~~Iterable[Doc]~~ |
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| | **RETURNS** | The model's prediction for each document.   |
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| 
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| ## SpanFinder.set_annotations {id="set_annotations",tag="method"}
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| 
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| Modify a batch of [`Doc`](/api/doc) objects using pre-computed scores.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > scores = span_finder.predict(docs)
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| > span_finder.set_annotations(docs, scores)
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| > ```
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| 
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| | Name     | Description                                          |
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| | -------- | ---------------------------------------------------- |
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| | `docs`   | The documents to modify. ~~Iterable[Doc]~~           |
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| | `scores` | The scores to set, produced by `SpanFinder.predict`. |
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| 
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| ## SpanFinder.update {id="update",tag="method"}
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| 
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| Learn from a batch of [`Example`](/api/example) objects containing the
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| predictions and gold-standard annotations, and update the component's model.
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| Delegates to [`predict`](/api/spanfinder#predict) and
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| [`get_loss`](/api/spanfinder#get_loss).
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > optimizer = nlp.initialize()
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| > losses = span_finder.update(examples, sgd=optimizer)
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| > ```
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| 
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| | Name           | Description                                                                                                              |
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| | -------------- | ------------------------------------------------------------------------------------------------------------------------ |
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| | `examples`     | A batch of [`Example`](/api/example) objects to learn from. ~~Iterable[Example]~~                                        |
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| | _keyword-only_ |                                                                                                                          |
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| | `drop`         | The dropout rate. ~~float~~                                                                                              |
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| | `sgd`          | An optimizer. Will be created via [`create_optimizer`](#create_optimizer) if not set. ~~Optional[Optimizer]~~            |
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| | `losses`       | Optional record of the loss during training. Updated using the component name as the key. ~~Optional[Dict[str, float]]~~ |
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| | **RETURNS**    | The updated `losses` dictionary. ~~Dict[str, float]~~                                                                    |
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| 
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| ## SpanFinder.get_loss {id="get_loss",tag="method"}
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| 
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| Find the loss and gradient of loss for the batch of documents and their
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| predicted scores.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > scores = span_finder.predict([eg.predicted for eg in examples])
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| > loss, d_loss = span_finder.get_loss(examples, scores)
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| > ```
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| 
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| | Name           | Description                                                                    |
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| | -------------- | ------------------------------------------------------------------------------ |
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| | `examples`     | The batch of examples. ~~Iterable[Example]~~                                   |
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| | `spans_scores` | Scores representing the model's predictions. ~~Tuple[Ragged, Floats2d]~~       |
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| | **RETURNS**    | The loss and the gradient, i.e. `(loss, gradient)`. ~~Tuple[float, Floats2d]~~ |
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| 
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| ## SpanFinder.create_optimizer {id="create_optimizer",tag="method"}
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| 
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| Create an optimizer for the pipeline component.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > optimizer = span_finder.create_optimizer()
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| > ```
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| 
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| | Name        | Description                  |
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| | ----------- | ---------------------------- |
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| | **RETURNS** | The optimizer. ~~Optimizer~~ |
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| 
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| ## SpanFinder.use_params {id="use_params",tag="method, contextmanager"}
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| 
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| Modify the pipe's model to use the given parameter values.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > with span_finder.use_params(optimizer.averages):
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| >     span_finder.to_disk("/best_model")
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| > ```
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| 
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| | Name     | Description                                        |
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| | -------- | -------------------------------------------------- |
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| | `params` | The parameter values to use in the model. ~~dict~~ |
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| 
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| ## SpanFinder.to_disk {id="to_disk",tag="method"}
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| 
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| Serialize the pipe to disk.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > span_finder.to_disk("/path/to/span_finder")
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| > ```
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| 
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| | Name           | Description                                                                                                                                |
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| | -------------- | ------------------------------------------------------------------------------------------------------------------------------------------ |
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| | `path`         | A path to a directory, which will be created if it doesn't exist. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
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| | _keyword-only_ |                                                                                                                                            |
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| | `exclude`      | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~                                                |
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| 
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| ## SpanFinder.from_disk {id="from_disk",tag="method"}
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| 
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| Load the pipe from disk. Modifies the object in place and returns it.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > span_finder.from_disk("/path/to/span_finder")
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| > ```
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| 
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| | Name           | Description                                                                                     |
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| | -------------- | ----------------------------------------------------------------------------------------------- |
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| | `path`         | A path to a directory. Paths may be either strings or `Path`-like objects. ~~Union[str, Path]~~ |
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| | _keyword-only_ |                                                                                                 |
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| | `exclude`      | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~     |
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| | **RETURNS**    | The modified `SpanFinder` object. ~~SpanFinder~~                                                |
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| 
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| ## SpanFinder.to_bytes {id="to_bytes",tag="method"}
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder = nlp.add_pipe("span_finder")
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| > span_finder_bytes = span_finder.to_bytes()
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| > ```
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| 
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| Serialize the pipe to a bytestring.
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| 
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| | Name           | Description                                                                                 |
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| | -------------- | ------------------------------------------------------------------------------------------- |
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| | _keyword-only_ |                                                                                             |
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| | `exclude`      | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
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| | **RETURNS**    | The serialized form of the `SpanFinder` object. ~~bytes~~                                   |
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| 
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| ## SpanFinder.from_bytes {id="from_bytes",tag="method"}
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| 
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| Load the pipe from a bytestring. Modifies the object in place and returns it.
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| 
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| > #### Example
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| >
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| > ```python
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| > span_finder_bytes = span_finder.to_bytes()
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| > span_finder = nlp.add_pipe("span_finder")
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| > span_finder.from_bytes(span_finder_bytes)
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| > ```
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| 
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| | Name           | Description                                                                                 |
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| | -------------- | ------------------------------------------------------------------------------------------- |
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| | `bytes_data`   | The data to load from. ~~bytes~~                                                            |
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| | _keyword-only_ |                                                                                             |
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| | `exclude`      | String names of [serialization fields](#serialization-fields) to exclude. ~~Iterable[str]~~ |
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| | **RETURNS**    | The `SpanFinder` object. ~~SpanFinder~~                                                     |
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| 
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| ## Serialization fields {id="serialization-fields"}
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| 
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| During serialization, spaCy will export several data fields used to restore
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| different aspects of the object. If needed, you can exclude them from
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| serialization by passing in the string names via the `exclude` argument.
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| 
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| > #### Example
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| >
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| > ```python
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| > data = span_finder.to_disk("/path", exclude=["vocab"])
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| > ```
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| 
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| | Name    | Description                                                    |
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| | ------- | -------------------------------------------------------------- |
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| | `vocab` | The shared [`Vocab`](/api/vocab).                              |
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| | `cfg`   | The config file. You usually don't want to exclude this.       |
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| | `model` | The binary model data. You usually don't want to exclude this. |
 |