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* Alignment: use a simplified ragged type for performance This introduces the AlignmentArray type, which is a simplified version of Ragged that performs better on the simple(r) indexing performed for alignment. * AlignmentArray: raise an error when using unsupported index * AlignmentArray: move error messages to Errors * AlignmentArray: remove simlified ... with simplifications * AlignmentArray: fix typo that broke a[n:n] indexing
8 lines
170 B
Cython
8 lines
170 B
Cython
from libcpp.vector cimport vector
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cimport numpy as np
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cdef class AlignmentArray:
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cdef np.ndarray _data
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cdef np.ndarray _lengths
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cdef np.ndarray _starts_ends
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