spaCy/spacy/tests/doc/test_doc_api.py
Ines Montani 37c7c85a86 💫 New JSON helpers, training data internals & CLI rewrite (#2932)
* Support nowrap setting in util.prints

* Tidy up and fix whitespace

* Simplify script and use read_jsonl helper

* Add JSON schemas (see #2928)

* Deprecate Doc.print_tree

Will be replaced with Doc.to_json, which will produce a unified format

* Add Doc.to_json() method (see #2928)

Converts Doc objects to JSON using the same unified format as the training data. Method also supports serializing selected custom attributes in the doc._. space.

* Remove outdated test

* Add write_json and write_jsonl helpers

* WIP: Update spacy train

* Tidy up spacy train

* WIP: Use wasabi for formatting

* Add GoldParse helpers for JSON format

* WIP: add debug-data command

* Fix typo

* Add missing import

* Update wasabi pin

* Add missing import

* 💫 Refactor CLI (#2943)

To be merged into #2932.

## Description
- [x] refactor CLI To use [`wasabi`](https://github.com/ines/wasabi)
- [x] use [`black`](https://github.com/ambv/black) for auto-formatting
- [x] add `flake8` config
- [x] move all messy UD-related scripts to `cli.ud`
- [x] make converters function that take the opened file and return the converted data (instead of having them handle the IO)

### Types of change
enhancement

## Checklist
<!--- Before you submit the PR, go over this checklist and make sure you can
tick off all the boxes. [] -> [x] -->
- [x] I have submitted the spaCy Contributor Agreement.
- [x] I ran the tests, and all new and existing tests passed.
- [x] My changes don't require a change to the documentation, or if they do, I've added all required information.

* Update wasabi pin

* Delete old test

* Update errors

* Fix typo

* Tidy up and format remaining code

* Fix formatting

* Improve formatting of messages

* Auto-format remaining code

* Add tok2vec stuff to spacy.train

* Fix typo

* Update wasabi pin

* Fix path checks for when train() is called as function

* Reformat and tidy up pretrain script

* Update argument annotations

* Raise error if model language doesn't match lang

* Document new train command
2018-11-30 20:16:14 +01:00

344 lines
11 KiB
Python

# coding: utf-8
from __future__ import unicode_literals
import pytest
import numpy
from spacy.tokens import Doc
from spacy.vocab import Vocab
from spacy.attrs import LEMMA
from ..util import get_doc
@pytest.mark.parametrize("text", [["one", "two", "three"]])
def test_doc_api_compare_by_string_position(en_vocab, text):
doc = Doc(en_vocab, words=text)
# Get the tokens in this order, so their ID ordering doesn't match the idx
token3 = doc[-1]
token2 = doc[-2]
token1 = doc[-1]
token1, token2, token3 = doc
assert token1 < token2 < token3
assert not token1 > token2
assert token2 > token1
assert token2 <= token3
assert token3 >= token1
def test_doc_api_getitem(en_tokenizer):
text = "Give it back! He pleaded."
tokens = en_tokenizer(text)
assert tokens[0].text == "Give"
assert tokens[-1].text == "."
with pytest.raises(IndexError):
tokens[len(tokens)]
def to_str(span):
return "/".join(token.text for token in span)
span = tokens[1:1]
assert not to_str(span)
span = tokens[1:4]
assert to_str(span) == "it/back/!"
span = tokens[1:4:1]
assert to_str(span) == "it/back/!"
with pytest.raises(ValueError):
tokens[1:4:2]
with pytest.raises(ValueError):
tokens[1:4:-1]
span = tokens[-3:6]
assert to_str(span) == "He/pleaded"
span = tokens[4:-1]
assert to_str(span) == "He/pleaded"
span = tokens[-5:-3]
assert to_str(span) == "back/!"
span = tokens[5:4]
assert span.start == span.end == 5 and not to_str(span)
span = tokens[4:-3]
assert span.start == span.end == 4 and not to_str(span)
span = tokens[:]
assert to_str(span) == "Give/it/back/!/He/pleaded/."
span = tokens[4:]
assert to_str(span) == "He/pleaded/."
span = tokens[:4]
assert to_str(span) == "Give/it/back/!"
span = tokens[:-3]
assert to_str(span) == "Give/it/back/!"
span = tokens[-3:]
assert to_str(span) == "He/pleaded/."
span = tokens[4:50]
assert to_str(span) == "He/pleaded/."
span = tokens[-50:4]
assert to_str(span) == "Give/it/back/!"
span = tokens[-50:-40]
assert span.start == span.end == 0 and not to_str(span)
span = tokens[40:50]
assert span.start == span.end == 7 and not to_str(span)
span = tokens[1:4]
assert span[0].orth_ == "it"
subspan = span[:]
assert to_str(subspan) == "it/back/!"
subspan = span[:2]
assert to_str(subspan) == "it/back"
subspan = span[1:]
assert to_str(subspan) == "back/!"
subspan = span[:-1]
assert to_str(subspan) == "it/back"
subspan = span[-2:]
assert to_str(subspan) == "back/!"
subspan = span[1:2]
assert to_str(subspan) == "back"
subspan = span[-2:-1]
assert to_str(subspan) == "back"
subspan = span[-50:50]
assert to_str(subspan) == "it/back/!"
subspan = span[50:-50]
assert subspan.start == subspan.end == 4 and not to_str(subspan)
@pytest.mark.parametrize(
"text", ["Give it back! He pleaded.", " Give it back! He pleaded. "]
)
def test_doc_api_serialize(en_tokenizer, text):
tokens = en_tokenizer(text)
new_tokens = Doc(tokens.vocab).from_bytes(tokens.to_bytes())
assert tokens.text == new_tokens.text
assert [t.text for t in tokens] == [t.text for t in new_tokens]
assert [t.orth for t in tokens] == [t.orth for t in new_tokens]
new_tokens = Doc(tokens.vocab).from_bytes(
tokens.to_bytes(tensor=False), tensor=False
)
assert tokens.text == new_tokens.text
assert [t.text for t in tokens] == [t.text for t in new_tokens]
assert [t.orth for t in tokens] == [t.orth for t in new_tokens]
new_tokens = Doc(tokens.vocab).from_bytes(
tokens.to_bytes(sentiment=False), sentiment=False
)
assert tokens.text == new_tokens.text
assert [t.text for t in tokens] == [t.text for t in new_tokens]
assert [t.orth for t in tokens] == [t.orth for t in new_tokens]
def test_doc_api_set_ents(en_tokenizer):
text = "I use goggle chrone to surf the web"
tokens = en_tokenizer(text)
assert len(tokens.ents) == 0
tokens.ents = [(tokens.vocab.strings["PRODUCT"], 2, 4)]
assert len(list(tokens.ents)) == 1
assert [t.ent_iob for t in tokens] == [0, 0, 3, 1, 0, 0, 0, 0]
assert tokens.ents[0].label_ == "PRODUCT"
assert tokens.ents[0].start == 2
assert tokens.ents[0].end == 4
def test_doc_api_merge(en_tokenizer):
text = "WKRO played songs by the beach boys all night"
# merge 'The Beach Boys'
doc = en_tokenizer(text)
assert len(doc) == 9
doc.merge(
doc[4].idx,
doc[6].idx + len(doc[6]),
tag="NAMED",
lemma="LEMMA",
ent_type="TYPE",
)
assert len(doc) == 7
assert doc[4].text == "the beach boys"
assert doc[4].text_with_ws == "the beach boys "
assert doc[4].tag_ == "NAMED"
# merge 'all night'
doc = en_tokenizer(text)
assert len(doc) == 9
doc.merge(
doc[7].idx,
doc[8].idx + len(doc[8]),
tag="NAMED",
lemma="LEMMA",
ent_type="TYPE",
)
assert len(doc) == 8
assert doc[7].text == "all night"
assert doc[7].text_with_ws == "all night"
# merge both with bulk merge
doc = en_tokenizer(text)
assert len(doc) == 9
with doc.retokenize() as retokenizer:
retokenizer.merge(
doc[4:7], attrs={"tag": "NAMED", "lemma": "LEMMA", "ent_type": "TYPE"}
)
retokenizer.merge(
doc[7:9], attrs={"tag": "NAMED", "lemma": "LEMMA", "ent_type": "TYPE"}
)
assert len(doc) == 6
assert doc[4].text == "the beach boys"
assert doc[4].text_with_ws == "the beach boys "
assert doc[4].tag_ == "NAMED"
assert doc[5].text == "all night"
assert doc[5].text_with_ws == "all night"
assert doc[5].tag_ == "NAMED"
def test_doc_api_merge_children(en_tokenizer):
"""Test that attachments work correctly after merging."""
text = "WKRO played songs by the beach boys all night"
doc = en_tokenizer(text)
assert len(doc) == 9
doc.merge(
doc[4].idx,
doc[6].idx + len(doc[6]),
tag="NAMED",
lemma="LEMMA",
ent_type="TYPE",
)
for word in doc:
if word.i < word.head.i:
assert word in list(word.head.lefts)
elif word.i > word.head.i:
assert word in list(word.head.rights)
def test_doc_api_merge_hang(en_tokenizer):
text = "through North and South Carolina"
doc = en_tokenizer(text)
doc.merge(18, 32, tag="", lemma="", ent_type="ORG")
doc.merge(8, 32, tag="", lemma="", ent_type="ORG")
def test_doc_api_retokenizer(en_tokenizer):
doc = en_tokenizer("WKRO played songs by the beach boys all night")
with doc.retokenize() as retokenizer:
retokenizer.merge(doc[4:7])
assert len(doc) == 7
assert doc[4].text == "the beach boys"
def test_doc_api_retokenizer_attrs(en_tokenizer):
doc = en_tokenizer("WKRO played songs by the beach boys all night")
# test both string and integer attributes and values
attrs = {LEMMA: "boys", "ENT_TYPE": doc.vocab.strings["ORG"]}
with doc.retokenize() as retokenizer:
retokenizer.merge(doc[4:7], attrs=attrs)
assert len(doc) == 7
assert doc[4].text == "the beach boys"
assert doc[4].lemma_ == "boys"
assert doc[4].ent_type_ == "ORG"
@pytest.mark.xfail
def test_doc_api_retokenizer_lex_attrs(en_tokenizer):
"""Test that lexical attributes can be changed (see #2390)."""
doc = en_tokenizer("WKRO played beach boys songs")
assert not any(token.is_stop for token in doc)
with doc.retokenize() as retokenizer:
retokenizer.merge(doc[2:4], attrs={"LEMMA": "boys", "IS_STOP": True})
assert doc[2].text == "beach boys"
assert doc[2].lemma_ == "boys"
assert doc[2].is_stop
new_doc = Doc(doc.vocab, words=["beach boys"])
assert new_doc[0].is_stop
def test_doc_api_sents_empty_string(en_tokenizer):
doc = en_tokenizer("")
doc.is_parsed = True
sents = list(doc.sents)
assert len(sents) == 0
def test_doc_api_runtime_error(en_tokenizer):
# Example that caused run-time error while parsing Reddit
# fmt: off
text = "67% of black households are single parent \n\n72% of all black babies born out of wedlock \n\n50% of all black kids don\u2019t finish high school"
deps = ["nsubj", "prep", "amod", "pobj", "ROOT", "amod", "attr", "",
"nummod", "prep", "det", "amod", "pobj", "acl", "prep", "prep",
"pobj", "", "nummod", "prep", "det", "amod", "pobj", "aux", "neg",
"ROOT", "amod", "dobj"]
# fmt: on
tokens = en_tokenizer(text)
doc = get_doc(tokens.vocab, words=[t.text for t in tokens], deps=deps)
nps = []
for np in doc.noun_chunks:
while len(np) > 1 and np[0].dep_ not in ("advmod", "amod", "compound"):
np = np[1:]
if len(np) > 1:
nps.append(
(np.start_char, np.end_char, np.root.tag_, np.text, np.root.ent_type_)
)
for np in nps:
start, end, tag, lemma, ent_type = np
doc.merge(start, end, tag=tag, lemma=lemma, ent_type=ent_type)
def test_doc_api_right_edge(en_tokenizer):
"""Test for bug occurring from Unshift action, causing incorrect right edge"""
# fmt: off
text = "I have proposed to myself, for the sake of such as live under the government of the Romans, to translate those books into the Greek tongue."
heads = [2, 1, 0, -1, -1, -3, 15, 1, -2, -1, 1, -3, -1, -1, 1, -2, -1, 1,
-2, -7, 1, -19, 1, -2, -3, 2, 1, -3, -26]
# fmt: on
tokens = en_tokenizer(text)
doc = get_doc(tokens.vocab, words=[t.text for t in tokens], heads=heads)
assert doc[6].text == "for"
subtree = [w.text for w in doc[6].subtree]
assert subtree == [
"for",
"the",
"sake",
"of",
"such",
"as",
"live",
"under",
"the",
"government",
"of",
"the",
"Romans",
",",
]
assert doc[6].right_edge.text == ","
def test_doc_api_has_vector():
vocab = Vocab()
vocab.reset_vectors(width=2)
vocab.set_vector("kitten", vector=numpy.asarray([0.0, 2.0], dtype="f"))
doc = Doc(vocab, words=["kitten"])
assert doc.has_vector
def test_doc_api_similarity_match():
doc = Doc(Vocab(), words=["a"])
with pytest.warns(None):
assert doc.similarity(doc[0]) == 1.0
assert doc.similarity(doc.vocab["a"]) == 1.0
doc2 = Doc(doc.vocab, words=["a", "b", "c"])
with pytest.warns(None):
assert doc.similarity(doc2[:1]) == 1.0
assert doc.similarity(doc2) == 0.0
def test_lowest_common_ancestor(en_tokenizer):
tokens = en_tokenizer("the lazy dog slept")
doc = get_doc(tokens.vocab, words=[t.text for t in tokens], heads=[2, 1, 1, 0])
lca = doc.get_lca_matrix()
assert lca[1, 1] == 1
assert lca[0, 1] == 2
assert lca[1, 2] == 2