mirror of
https://github.com/explosion/spaCy.git
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a183db3cef
* Try to fix doc.copy * Set dev version * Make vocab always own lexemes * Change version * Add SpanGroups.copy method * Fix set_annotations during Parser.update * Fix dict proxy copy * Upd version * Fix copying SpanGroups * Fix set_annotations in parser.update * Fix parser set_annotations during update * Revert "Fix parser set_annotations during update" This reverts commiteb138c89ed
. * Revert "Fix set_annotations in parser.update" This reverts commitc6df0eafd0
. * Fix set_annotations during parser update * Inc version * Handle final states in get_oracle_sequence * Inc version * Try to fix parser training * Inc version * Fix * Inc version * Fix parser oracle * Inc version * Inc version * Fix transition has_gold * Inc version * Try to use real histories, not oracle * Inc version * Upd parser * Inc version * WIP on rewrite parser * WIP refactor parser * New progress on parser model refactor * Prepare to remove parser_model.pyx * Convert parser from cdef class * Delete spacy.ml.parser_model * Delete _precomputable_affine module * Wire up tb_framework to new parser model * Wire up parser model * Uncython ner.pyx and dep_parser.pyx * Uncython * Work on parser model * Support unseen_classes in parser model * Support unseen classes in parser * Cleaner handling of unseen classes * Work through tests * Keep working through errors * Keep working through errors * Work on parser. 15 tests failing * Xfail beam stuff. 9 failures * More xfail. 7 failures * Xfail. 6 failures * cleanup * formatting * fixes * pass nO through * Fix empty doc in update * Hackishly fix resizing. 3 failures * Fix redundant test. 2 failures * Add reference version * black formatting * Get tests passing with reference implementation * Fix missing prints * Add missing file * Improve indexing on reference implementation * Get non-reference forward func working * Start rigging beam back up * removing redundant tests, cf #8106 * black formatting * temporarily xfailing issue 4314 * make flake8 happy again * mypy fixes * ensure labels are added upon predict * cleanup remnants from merge conflicts * Improve unseen label masking Two changes to speed up masking by ~10%: - Use a bool array rather than an array of float32. - Let the mask indicate whether a label was seen, rather than unseen. The mask is most frequently used to index scores for seen labels. However, since the mask marked unseen labels, this required computing an intermittent flipped mask. * Write moves costs directly into numpy array (#10163) This avoids elementwise indexing and the allocation of an additional array. Gives a ~15% speed improvement when using batch_by_sequence with size 32. * Temporarily disable ner and rehearse tests Until rehearse is implemented again in the refactored parser. * Fix loss serialization issue (#10600) * Fix loss serialization issue Serialization of a model fails with: TypeError: array(738.3855, dtype=float32) is not JSON serializable Fix this using float conversion. * Disable CI steps that require spacy.TransitionBasedParser.v2 After finishing the refactor, TransitionBasedParser.v2 should be provided for backwards compat. * Add back support for beam parsing to the refactored parser (#10633) * Add back support for beam parsing Beam parsing was already implemented as part of the `BeamBatch` class. This change makes its counterpart `GreedyBatch`. Both classes are hooked up in `TransitionModel`, selecting `GreedyBatch` when the beam size is one, or `BeamBatch` otherwise. * Use kwarg for beam width Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Avoid implicit default for beam_width and beam_density * Parser.{beam,greedy}_parse: ensure labels are added * Remove 'deprecated' comments Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Parser `StateC` optimizations (#10746) * `StateC`: Optimizations Avoid GIL acquisition in `__init__` Increase default buffer capacities on init Reduce C++ exception overhead * Fix typo * Replace `set::count` with `set::find` * Add exception attribute to c'tor * Remove unused import * Use a power-of-two value for initial capacity Use default-insert to init `_heads` and `_unshiftable` * Merge `cdef` variable declarations and assignments * Vectorize `example.get_aligned_parses` (#10789) * `example`: Vectorize `get_aligned_parse` Rename `numpy` import * Convert aligned array to lists before returning * Revert import renaming * Elide slice arguments when selecting the entire range * Tagger/morphologizer alignment performance optimizations (#10798) * `example`: Unwrap `numpy` scalar arrays before passing them to `StringStore.__getitem__` * `AlignmentArray`: Use native list as staging buffer for offset calculation * `example`: Vectorize `get_aligned` * Hoist inner functions out of `get_aligned` * Replace inline `if..else` clause in assignment statement * `AlignmentArray`: Use raw indexing into offset and data `numpy` arrays * `example`: Replace array unique value check with `groupby` * `example`: Correctly exclude tokens with no alignment in `_get_aligned_vectorized` Simplify `_get_aligned_non_vectorized` * `util`: Update `all_equal` docstring * Explicitly use `int32_t*` * Restore C CPU inference in the refactored parser (#10747) * Bring back the C parsing model The C parsing model is used for CPU inference and is still faster for CPU inference than the forward pass of the Thinc model. * Use C sgemm provided by the Ops implementation * Make tb_framework module Cython, merge in C forward implementation * TransitionModel: raise in backprop returned from forward_cpu * Re-enable greedy parse test * Return transition scores when forward_cpu is used * Apply suggestions from code review Import `Model` from `thinc.api` Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Use relative imports in tb_framework * Don't assume a default for beam_width * We don't have a direct dependency on BLIS anymore * Rename forwards to _forward_{fallback,greedy_cpu} * Require thinc >=8.1.0,<8.2.0 * tb_framework: clean up imports * Fix return type of _get_seen_mask * Move up _forward_greedy_cpu * Style fixes. * Lower thinc lowerbound to 8.1.0.dev0 * Formatting fix Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> * Reimplement parser rehearsal function (#10878) * Reimplement parser rehearsal function Before the parser refactor, rehearsal was driven by a loop in the `rehearse` method itself. For each parsing step, the loops would: 1. Get the predictions of the teacher. 2. Get the predictions and backprop function of the student. 3. Compute the loss and backprop into the student. 4. Move the teacher and student forward with the predictions of the student. In the refactored parser, we cannot perform search stepwise rehearsal anymore, since the model now predicts all parsing steps at once. Therefore, rehearsal is performed in the following steps: 1. Get the predictions of all parsing steps from the student, along with its backprop function. 2. Get the predictions from the teacher, but use the predictions of the student to advance the parser while doing so. 3. Compute the loss and backprop into the student. To support the second step a new method, `advance_with_actions` is added to `GreedyBatch`, which performs the provided parsing steps. * tb_framework: wrap upper_W and upper_b in Linear Thinc's Optimizer cannot handle resizing of existing parameters. Until it does, we work around this by wrapping the weights/biases of the upper layer of the parser model in Linear. When the upper layer is resized, we copy over the existing parameters into a new Linear instance. This does not trigger an error in Optimizer, because it sees the resized layer as a new set of parameters. * Add test for TransitionSystem.apply_actions * Better FIXME marker Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com> * Fixes from Madeesh * Apply suggestions from Sofie Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Remove useless assignment Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> * Rename some identifiers in the parser refactor (#10935) * Rename _parseC to _parse_batch * tb_framework: prefix many auxiliary functions with underscore To clearly state the intent that they are private. * Rename `lower` to `hidden`, `upper` to `output` * Parser slow test fixup We don't have TransitionBasedParser.{v1,v2} until we bring it back as a legacy option. * Remove last vestiges of PrecomputableAffine This does not exist anymore as a separate layer. * ner: re-enable sentence boundary checks * Re-enable test that works now. * test_ner: make loss test more strict again * Remove commented line * Re-enable some more beam parser tests * Remove unused _forward_reference function * Update for CBlas changes in Thinc 8.1.0.dev2 Bump thinc dependency to 8.1.0.dev3. * Remove references to spacy.TransitionBasedParser.{v1,v2} Since they will not be offered starting with spaCy v4. * `tb_framework`: Replace references to `thinc.backends.linalg` with `CBlas` * dont use get_array_module (#11056) (#11293) Co-authored-by: kadarakos <kadar.akos@gmail.com> * Move `thinc.extra.search` to `spacy.pipeline._parser_internals` (#11317) * `search`: Move from `thinc.extra.search` Fix NPE in `Beam.__dealloc__` * `pytest`: Add support for executing Cython tests Move `search` tests from thinc and patch them to run with `pytest` * `mypy` fix * Update comment * `conftest`: Expose `register_cython_tests` * Remove unused import * Move `argmax` impls to new `_parser_utils` Cython module (#11410) * Parser does not have to be a cdef class anymore This also fixes validation of the initialization schema. * Add back spacy.TransitionBasedParser.v2 * Fix a rename that was missed in #10878. So that rehearsal tests pass. * Remove module from setup.py that got added during the merge * Bring back support for `update_with_oracle_cut_size` (#12086) * Bring back support for `update_with_oracle_cut_size` This option was available in the pre-refactor parser, but was never implemented in the refactored parser. This option cuts transition sequences that are longer than `update_with_oracle_cut` size into separate sequences that have at most `update_with_oracle_cut` transitions. The oracle (gold standard) transition sequence is used to determine the cuts and the initial states for the additional sequences. Applying this cut makes the batches more homogeneous in the transition sequence lengths, making forward passes (and as a consequence training) much faster. Training time 1000 steps on de_core_news_lg: - Before this change: 149s - After this change: 68s - Pre-refactor parser: 81s * Fix a rename that was missed in #10878. So that rehearsal tests pass. * Apply suggestions from @shadeMe * Use chained conditional * Test with update_with_oracle_cut_size={0, 1, 5, 100} And fix a git that occurs with a cut size of 1. * Fix up some merge fall out * Update parser distillation for the refactor In the old parser, we'd iterate over the transitions in the distill function and compute the loss/gradients on the go. In the refactored parser, we first let the student model parse the inputs. Then we'll let the teacher compute the transition probabilities of the states in the student's transition sequence. We can then compute the gradients of the student given the teacher. * Add back spacy.TransitionBasedParser.v1 references - Accordion in the architecture docs. - Test in test_parse, but disabled until we have a spacy-legacy release. Co-authored-by: Matthew Honnibal <honnibal+gh@gmail.com> Co-authored-by: svlandeg <svlandeg@github.com> Co-authored-by: Sofie Van Landeghem <svlandeg@users.noreply.github.com> Co-authored-by: Madeesh Kannan <shadeMe@users.noreply.github.com> Co-authored-by: Adriane Boyd <adrianeboyd@gmail.com> Co-authored-by: kadarakos <kadar.akos@gmail.com>
351 lines
13 KiB
Python
351 lines
13 KiB
Python
# cython: infer_types=True, profile=True, binding=True
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from collections import defaultdict
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from typing import Optional, Iterable, Callable
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from thinc.api import Model, Config
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from ._parser_internals.transition_system import TransitionSystem
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from .transition_parser import Parser
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from ._parser_internals.arc_eager import ArcEager
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from .functions import merge_subtokens
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from ..language import Language
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from ._parser_internals import nonproj
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from ._parser_internals.nonproj import DELIMITER
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from ..scorer import Scorer
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from ..training import remove_bilu_prefix
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from ..util import registry
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default_model_config = """
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[model]
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@architectures = "spacy.TransitionBasedParser.v3"
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state_type = "parser"
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extra_state_tokens = false
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hidden_width = 64
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maxout_pieces = 2
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[model.tok2vec]
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@architectures = "spacy.HashEmbedCNN.v2"
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pretrained_vectors = null
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width = 96
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depth = 4
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embed_size = 2000
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window_size = 1
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maxout_pieces = 3
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subword_features = true
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"""
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DEFAULT_PARSER_MODEL = Config().from_str(default_model_config)["model"]
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@Language.factory(
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"parser",
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assigns=["token.dep", "token.head", "token.is_sent_start", "doc.sents"],
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default_config={
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"moves": None,
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"update_with_oracle_cut_size": 100,
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"learn_tokens": False,
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"min_action_freq": 30,
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"model": DEFAULT_PARSER_MODEL,
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"scorer": {"@scorers": "spacy.parser_scorer.v1"},
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},
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default_score_weights={
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"dep_uas": 0.5,
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"dep_las": 0.5,
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"dep_las_per_type": None,
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"sents_p": None,
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"sents_r": None,
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"sents_f": 0.0,
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},
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)
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def make_parser(
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nlp: Language,
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name: str,
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model: Model,
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moves: Optional[TransitionSystem],
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update_with_oracle_cut_size: int,
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learn_tokens: bool,
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min_action_freq: int,
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scorer: Optional[Callable],
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):
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"""Create a transition-based DependencyParser component. The dependency parser
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jointly learns sentence segmentation and labelled dependency parsing, and can
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optionally learn to merge tokens that had been over-segmented by the tokenizer.
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The parser uses a variant of the non-monotonic arc-eager transition-system
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described by Honnibal and Johnson (2014), with the addition of a "break"
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transition to perform the sentence segmentation. Nivre's pseudo-projective
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dependency transformation is used to allow the parser to predict
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non-projective parses.
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The parser is trained using an imitation learning objective. The parser follows
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the actions predicted by the current weights, and at each state, determines
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which actions are compatible with the optimal parse that could be reached
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from the current state. The weights such that the scores assigned to the
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set of optimal actions is increased, while scores assigned to other
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actions are decreased. Note that more than one action may be optimal for
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a given state.
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model (Model): The model for the transition-based parser. The model needs
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to have a specific substructure of named components --- see the
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spacy.ml.tb_framework.TransitionModel for details.
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moves (Optional[TransitionSystem]): This defines how the parse-state is created,
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updated and evaluated. If 'moves' is None, a new instance is
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created with `self.TransitionSystem()`. Defaults to `None`.
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update_with_oracle_cut_size (int): During training, cut long sequences into
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shorter segments by creating intermediate states based on the gold-standard
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history. The model is not very sensitive to this parameter, so you usually
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won't need to change it. 100 is a good default.
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learn_tokens (bool): Whether to learn to merge subtokens that are split
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relative to the gold standard. Experimental.
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min_action_freq (int): The minimum frequency of labelled actions to retain.
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Rarer labelled actions have their label backed-off to "dep". While this
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primarily affects the label accuracy, it can also affect the attachment
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structure, as the labels are used to represent the pseudo-projectivity
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transformation.
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scorer (Optional[Callable]): The scoring method.
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"""
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return DependencyParser(
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nlp.vocab,
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model,
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name,
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moves=moves,
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update_with_oracle_cut_size=update_with_oracle_cut_size,
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multitasks=[],
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learn_tokens=learn_tokens,
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min_action_freq=min_action_freq,
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beam_width=1,
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beam_density=0.0,
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beam_update_prob=0.0,
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# At some point in the future we can try to implement support for
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# partial annotations, perhaps only in the beam objective.
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incorrect_spans_key=None,
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scorer=scorer,
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)
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@Language.factory(
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"beam_parser",
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assigns=["token.dep", "token.head", "token.is_sent_start", "doc.sents"],
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default_config={
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"beam_width": 8,
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"beam_density": 0.01,
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"beam_update_prob": 0.5,
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"moves": None,
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"update_with_oracle_cut_size": 100,
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"learn_tokens": False,
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"min_action_freq": 30,
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"model": DEFAULT_PARSER_MODEL,
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"scorer": {"@scorers": "spacy.parser_scorer.v1"},
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},
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default_score_weights={
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"dep_uas": 0.5,
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"dep_las": 0.5,
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"dep_las_per_type": None,
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"sents_p": None,
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"sents_r": None,
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"sents_f": 0.0,
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},
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)
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def make_beam_parser(
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nlp: Language,
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name: str,
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model: Model,
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moves: Optional[TransitionSystem],
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update_with_oracle_cut_size: int,
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learn_tokens: bool,
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min_action_freq: int,
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beam_width: int,
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beam_density: float,
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beam_update_prob: float,
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scorer: Optional[Callable],
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):
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"""Create a transition-based DependencyParser component that uses beam-search.
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The dependency parser jointly learns sentence segmentation and labelled
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dependency parsing, and can optionally learn to merge tokens that had been
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over-segmented by the tokenizer.
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|
|
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The parser uses a variant of the non-monotonic arc-eager transition-system
|
|
described by Honnibal and Johnson (2014), with the addition of a "break"
|
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transition to perform the sentence segmentation. Nivre's pseudo-projective
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dependency transformation is used to allow the parser to predict
|
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non-projective parses.
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The parser is trained using a global objective. That is, it learns to assign
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probabilities to whole parses.
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model (Model): The model for the transition-based parser. The model needs
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to have a specific substructure of named components --- see the
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spacy.ml.tb_framework.TransitionModel for details.
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moves (Optional[TransitionSystem]): This defines how the parse-state is created,
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updated and evaluated. If 'moves' is None, a new instance is
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created with `self.TransitionSystem()`. Defaults to `None`.
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update_with_oracle_cut_size (int): During training, cut long sequences into
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shorter segments by creating intermediate states based on the gold-standard
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history. The model is not very sensitive to this parameter, so you usually
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won't need to change it. 100 is a good default.
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beam_width (int): The number of candidate analyses to maintain.
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beam_density (float): The minimum ratio between the scores of the first and
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last candidates in the beam. This allows the parser to avoid exploring
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candidates that are too far behind. This is mostly intended to improve
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efficiency, but it can also improve accuracy as deeper search is not
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always better.
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beam_update_prob (float): The chance of making a beam update, instead of a
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greedy update. Greedy updates are an approximation for the beam updates,
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and are faster to compute.
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learn_tokens (bool): Whether to learn to merge subtokens that are split
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relative to the gold standard. Experimental.
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min_action_freq (int): The minimum frequency of labelled actions to retain.
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Rarer labelled actions have their label backed-off to "dep". While this
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primarily affects the label accuracy, it can also affect the attachment
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structure, as the labels are used to represent the pseudo-projectivity
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transformation.
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"""
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return DependencyParser(
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nlp.vocab,
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model,
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name,
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moves=moves,
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update_with_oracle_cut_size=update_with_oracle_cut_size,
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beam_width=beam_width,
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beam_density=beam_density,
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beam_update_prob=beam_update_prob,
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multitasks=[],
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learn_tokens=learn_tokens,
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min_action_freq=min_action_freq,
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# At some point in the future we can try to implement support for
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# partial annotations, perhaps only in the beam objective.
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incorrect_spans_key=None,
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scorer=scorer,
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)
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def parser_score(examples, **kwargs):
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"""Score a batch of examples.
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examples (Iterable[Example]): The examples to score.
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RETURNS (Dict[str, Any]): The scores, produced by Scorer.score_spans
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and Scorer.score_deps.
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DOCS: https://spacy.io/api/dependencyparser#score
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"""
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def has_sents(doc):
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return doc.has_annotation("SENT_START")
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def dep_getter(token, attr):
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dep = getattr(token, attr)
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dep = token.vocab.strings.as_string(dep).lower()
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return dep
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results = {}
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results.update(
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Scorer.score_spans(examples, "sents", has_annotation=has_sents, **kwargs)
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)
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kwargs.setdefault("getter", dep_getter)
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kwargs.setdefault("ignore_labels", ("p", "punct"))
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results.update(Scorer.score_deps(examples, "dep", **kwargs))
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del results["sents_per_type"]
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return results
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@registry.scorers("spacy.parser_scorer.v1")
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def make_parser_scorer():
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return parser_score
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class DependencyParser(Parser):
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"""Pipeline component for dependency parsing.
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DOCS: https://spacy.io/api/dependencyparser
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"""
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TransitionSystem = ArcEager
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def __init__(
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self,
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vocab,
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model,
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name="parser",
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moves=None,
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*,
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update_with_oracle_cut_size=100,
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min_action_freq=30,
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learn_tokens=False,
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beam_width=1,
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beam_density=0.0,
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beam_update_prob=0.0,
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multitasks=tuple(),
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incorrect_spans_key=None,
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scorer=parser_score,
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):
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"""Create a DependencyParser."""
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super().__init__(
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vocab,
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model,
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name,
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moves,
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update_with_oracle_cut_size=update_with_oracle_cut_size,
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min_action_freq=min_action_freq,
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learn_tokens=learn_tokens,
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beam_width=beam_width,
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beam_density=beam_density,
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beam_update_prob=beam_update_prob,
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multitasks=multitasks,
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incorrect_spans_key=incorrect_spans_key,
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scorer=scorer,
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)
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@property
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def postprocesses(self):
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output = [nonproj.deprojectivize]
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if self.cfg.get("learn_tokens") is True:
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output.append(merge_subtokens)
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return tuple(output)
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def add_multitask_objective(self, mt_component):
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self._multitasks.append(mt_component)
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def init_multitask_objectives(self, get_examples, nlp=None, **cfg):
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# TODO: transfer self.model.get_ref("tok2vec") to the multitask's model ?
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|
for labeller in self._multitasks:
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labeller.model.set_dim("nO", len(self.labels))
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|
if labeller.model.has_ref("output_layer"):
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labeller.model.get_ref("output_layer").set_dim("nO", len(self.labels))
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|
labeller.initialize(get_examples, nlp=nlp)
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|
|
|
@property
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|
def labels(self):
|
|
labels = set()
|
|
# Get the labels from the model by looking at the available moves
|
|
for move in self.move_names:
|
|
if "-" in move:
|
|
label = remove_bilu_prefix(move)
|
|
if DELIMITER in label:
|
|
label = label.split(DELIMITER)[1]
|
|
labels.add(label)
|
|
return tuple(sorted(labels))
|
|
|
|
def scored_parses(self, beams):
|
|
"""Return two dictionaries with scores for each beam/doc that was processed:
|
|
one containing (i, head) keys, and another containing (i, label) keys.
|
|
"""
|
|
head_scores = []
|
|
label_scores = []
|
|
for beam in beams:
|
|
score_head_dict = defaultdict(float)
|
|
score_label_dict = defaultdict(float)
|
|
for score, parses in self.moves.get_beam_parses(beam):
|
|
for head, i, label in parses:
|
|
score_head_dict[(i, head)] += score
|
|
score_label_dict[(i, label)] += score
|
|
head_scores.append(score_head_dict)
|
|
label_scores.append(score_label_dict)
|
|
return head_scores, label_scores
|
|
|
|
def _ensure_labels_are_added(self, docs):
|
|
# This gives the parser a chance to add labels it's missing for a batch
|
|
# of documents. However, this isn't desirable for the dependency parser,
|
|
# because we instead have a label frequency cut-off and back off rare
|
|
# labels to 'dep'.
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|
pass
|